Array 1 101034-98423 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYWJ01000001.1 Streptococcus anginosus strain UMB972 NODE_1_length_300358_cov_34.825088, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 101033 36 100.0 30 .................................... TATAGTGGAGGCAGATACATACTCCTTATT 100967 36 100.0 30 .................................... TTCTATGTATCTGAGTTATTACTTAGATAT 100901 36 100.0 30 .................................... GTTTGATGAATTGCCTATTTTAATCAATAA 100835 36 100.0 30 .................................... ACTATTTTCTGTGCTTTGATTAGTAAGTGT 100769 36 100.0 30 .................................... ATGACTTCTTTTCAAAAAATTTTCAGAAAA 100703 36 100.0 30 .................................... GAACTACGTATATCACACAATCCGTCTGAT 100637 36 100.0 30 .................................... TTTAGGAAGACCGCCAGCAGGTTTTCTGAT 100571 36 100.0 30 .................................... TACAAAACTACATAAATAATATCGAATTCA 100505 36 100.0 30 .................................... AACTTGGTTTGGTTTTATTTGCGGCTGATT 100439 36 100.0 30 .................................... TGCAAAACACAATGAAGCTTCTCTTGCTTC 100373 36 100.0 30 .................................... TTATTCCACTTGTGACCTTACAAAAGATTT 100307 36 100.0 30 .................................... AACAACTGATGACTATGTTATTATAGGAAT 100241 36 100.0 30 .................................... AAAAGGTATGTTGAAACAACCATTTTACAA 100175 36 100.0 30 .................................... ATACGGACATACTGGTATTGTCACGGGTTT 100109 36 100.0 30 .................................... ACAAAAACGTGCAATCGCTAAATCAGTTAA 100043 36 100.0 30 .................................... ACCAGATTTCAATTATTTTTCTTCAATGAA 99977 36 100.0 30 .................................... ATTTCTGTGTGCTAACCAATCATAATATGA 99911 36 100.0 30 .................................... TCGCTGAATTTCAGTCTTTGAAAGGGTAGA 99845 36 100.0 30 .................................... TTGCGGTGATATTATAATTACAGATGTAAA 99779 36 100.0 30 .................................... TGAAGGCACTTTTGAAAAGAAATTGATGCA 99713 36 100.0 30 .................................... CTCTGCATTGGCATTTTCTATCGCTTGCTC 99647 36 100.0 30 .................................... CCACTCATATTTTCCTTTTTTTGTTTTCGA 99581 36 100.0 30 .................................... AATCAAAGATCGCAATGGGAAGATGATTGA 99515 36 100.0 30 .................................... AACCGTGTATATGAAGTGAAACTAAGTAAT 99449 36 100.0 30 .................................... TCCAATTGGTTATGGTGACCGCTTGAAAAA 99383 36 100.0 30 .................................... TTCTTTGTATCTTAGTTATTATTTAGATAT 99317 36 100.0 30 .................................... CGGACATACTGGTATTGTAACAGGTTTAAG 99251 36 100.0 30 .................................... CAATGAAATTAGAGTTATTCCAATTGGATA 99185 36 100.0 30 .................................... CAAATTTAAAGGCTGAATATGTGGATAGTA 99119 36 100.0 30 .................................... ACTATTTTCTGTGCTTTGATTTGTTACTGT 99053 36 100.0 31 .................................... CTAATTTTTTAGGTTATTCATATTTATTTAA 98986 36 100.0 30 .................................... ATTTGATGAACTCCCTATTTTAATAAACAA 98920 36 100.0 30 .................................... CAGCAACTGGTCCATATAATAATGTGGTTA 98854 36 100.0 30 .................................... AACGCAAGCAAAACAGGCAGGGTTTGGAAA 98788 36 100.0 30 .................................... TGACATCACTACCGACCCAACCTTACTAAC 98722 36 100.0 30 .................................... CAGCAAGTGTTATTGCTATGGCTGGGAATA 98656 36 100.0 30 .................................... TACGAGGGAACGAGCGGATATGACAACGTT 98590 36 100.0 30 .................................... CGTGGTCACTACATCAGCTAGTGTCAATAA 98524 36 100.0 30 .................................... TAGAACAGGTCCTTATAATAATGTGGCTAT 98458 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 40 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ACAGTTGAATGAAAAGCCTGAAGTGAAATCTATGTTAGAAAAATTAGTTGCAACTATTACAGAACTAATTGCTTTTGAATGTTTAGAAAACGAGCTGGATTTAGAGTATGATGAAATAACAATTTTGGAATTGATTGATGCTTTAGGTGTAAAAATTGAAACACTAAGTGACACTGTTTTTGAGAAAAGTTTAGAGATTGTTCAGGTGTTTAAATATCTTTCTAAAAAGAAACTGCTTGTCTTTGTGAATGTATCATGTTATCTGTCTGAACATGAACTAGCTAAATTGGTAGAATATATTCAACTTCATAATATAAATGTACTGTTTGTTGAACCAAGAAAAGTATACGACTTCCCTCAATATGTAGTGGATGAGGACTATTTCTTATCTTGTGAGAATATGATATAATATTAGTAAATATAAGGAATCATTTGAGCTGAAGTCTAGCTGGGACGAATGGCGCGATTACGAAATTTCGAGACAAAAATTGGTCCACGAG # Right flank : ACAATACATTTTAATCATAGGGCTTGCAAATTTTTCCAATCGTGTTATAATACTTTTTAGAGACATATCACCTACAGGAAATCTTTCAGAGAGCGTGTGGAGCTGGGAATCACGCAGAGGATGTAGCTGGGACTACTCGATTTGTTTTTATGCAAACATGAAACGGTGGCTACGTTAGAGCCAATCAGAGGTGTCAACAAACTTTTTTGTTGTACATGAATGAAGGTGGAACCACGTTGCGACGTCCTTTTAGGATTGTCGCTTTTTATTTTGTCGGAAGGAGGAAGAGTTATGCTCTATATGATTGGTGGATCGCCTTACAGCGGGAAGTCAACAATTGCTTTCCTTCTTGCTCGGAAGTACGATCTGCTTCATATCAAGTTAGATGATTTGACAGACCAGATGATGGATCAAGCAAGAGCGAACGCAAAGCCGATTTCCCTTCTGAGACAGGACAGAAGTCCGGATCAAATCTGGTTGAGACATCCAAAGGAGATGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 20794-21555 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYWJ01000008.1 Streptococcus anginosus strain UMB972 NODE_8_length_81999_cov_39.238653, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 20794 37 100.0 36 ..................................... GTTTCTTATCTTCACTTGTGTATTGCGTCAAACCTA 20867 37 100.0 34 ..................................... TGACCTTCCCATTTATTATAGATGATGTTCATAT 20938 37 100.0 35 ..................................... ATAATTTGTTTCATGATATCCTTCTTTCTGTCAAT 21010 37 100.0 37 ..................................... CCAAGCACCTTTCCAATATAAACCAACTTCACACAAA 21084 37 100.0 35 ..................................... TTTAGCAGCAAGTTGCCAAATTGTTCCTTCTTCTT 21156 37 100.0 36 ..................................... TGAAAAAGAACGGTAGATTAAACCATTCAGTAACAT 21229 37 100.0 34 ..................................... AAGTCATGTTTTCGATTTTACTTTCTTTTTTTCG 21300 37 100.0 36 ..................................... TTTTGTTCTGACATAATTGTCCTCCTTCTTAATTTG 21373 37 100.0 35 ..................................... ATTGCAGACTTCACATGTGTCTAATTCTTCGTCTG 21445 37 100.0 36 ..................................... TCGTTCTGTGTTTGCGCAAGCTGCAAAGGATTTTAA 21518 37 86.5 0 ..............................TTTTT.. | T [21553] ========== ====== ====== ====== ===================================== ===================================== ================== 11 37 98.8 35 GTTAATAACCCATGTTACCTCGAGAGGGGACGGAAAC # Left flank : ATTCGTTGTTTTGAAACGGAGAATCATGAGGAATTTTTAAGTGGTTATACGACGGGAGAGTAATGATGGGATTTTTTTACAACTTAGATGAGGAGGCGAAAAACTTTGCGCAGAAAAAAACGGTATTTTGTCTTGTTGTCTATGATATCATCAGCAATAAGCGGCGCCTCAAACTTTCTAAATTGTTGGAAGGATATGGTAGGAGAGTCCAACGTTCTTGTTTTGAAATTGATGTTGAAAAAACAAATTATAATCACCTTCTTCAAGATTTAGAAAAATTTTATTGTCAGGAGGAGGGAGACAATATAATTGTTTATGTTGGTGATAAGAAAGAAACAGTCATCTTCAACTCTTATGAAGGAGCAGAAATTCTGGAAGACATTTTGTTTTTCTGAAACTTTTAATTTAATGAAAAATATGGTAAAATATAGATATGTTTCCAAATCTTGAATAAAACAAGATTTAGGGGTCATTCTCTGAAGCTTGATACAAGATATGGG # Right flank : CATGAAATTCGCACAGATACTTGACGACGCTTTCATATTATGCTAATATATTGATTGTAAAGAATAGTTCTGATAAACAGAGAGGGCGCCCTTAACTGGTGAAAAATACTTTCACTTTTTGGGGTGCTTTTTTAGTAAGGAAGGTTAGAAATGTGAAGAAAGTACAATTGTATTTATCAAACGTTGAAATAAGAGACGATGCTCTAGTATCTAAGTTGCAAGGATTTCTAATGAGCCAGATTTCGGAGGATTTTGTGGATTTTCTTCATGAACAAGAGACAAATCCCTACTCTTTAAATCTATTATCCACGAGAGAAGGAACGATATGGACGGTCAATCTACTTACCCAAGAAGCAGAAGAGAAGATATTGCCTCAGCTTCTGGATTTAGAAGAGATTCAGTTAGATACTTACTCAGGAGCCATATCTGTAAAGAGAATAGAGATTCAGACTTTATCACAAGAGACCTTATTGGAAATTTTTCGGGAGGATGATCCTAGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAATAACCCATGTTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 30255-30861 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYWJ01000008.1 Streptococcus anginosus strain UMB972 NODE_8_length_81999_cov_39.238653, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 30255 37 100.0 37 ..................................... CTTCTTGTTTGTTCATTTTATTCCTCCCACATTTTCA 30329 37 100.0 34 ..................................... CCAGTTGGTTTTAAGTATTGCGATGCATAAACCA 30400 37 100.0 34 ..................................... CATAGCACATCGCAAATAATCATTGTAACGTAAT 30471 37 100.0 34 ..................................... AGATAGAATAGAATAAGCAATCCGCTCTCCTTCA 30542 37 100.0 34 ..................................... GCAAACGGCTTAGGTTGTGAGTATAACTTTCTCG 30613 37 100.0 33 ..................................... TGTCAAGCTTCTACCATCTGCATTTGTGAGTTG 30683 37 100.0 36 ..................................... GCGTCATTTCCATAACGGTCGCCCATGTCATAGTAA 30756 37 100.0 33 ..................................... CCTGGTGTGTGAATCAAAACTTTGTTTGACTTA 30826 36 89.2 0 ..........C....................-A...T | ========== ====== ====== ====== ===================================== ===================================== ================== 9 37 98.8 34 GTTAGTAACCTATATTACCTCGAGAGGGGACGGAAAC # Left flank : CAAGCTAAACCTGTCGCACCCAGATGCCGATGCTATCATTGACTATCTGGAGCATGAGATGAAGAAGGAGCGTGGGAGTGAAAGCAAGGAAAGAGTCTATAACAAGACTTCTACTTTAAACCTTTTGTCTTTTAGCAATATTTTGGAATTTTATCAGGCGGAAGAGTCTTTACTGGAAAGTATCAAATTAGTGAAGAGTTTTAACGGGGAAAGAAATCGTCTAGCACATGGTCTCGCTGAAATCGATAAAAAGGCAATTAGCTCAAAAAGATTGCGCGCCTTGTTGGGAACATTAAAGGATGTCCTCCAGTCCAACTATGATATTAGAGAAGAACGATTCTCCTATTACGATGTTAAGAATGAGGAGTTACTTGAACTGCTCAAGTAGCTCTCAGTTCTTCCTTTTTGGTTCAAAATATGTTATAATCAAAGAAGTTTCCACTTTTGGGCTGTTAAAACAAGATATGGTGGTTTTCTGGTATTTATGTACAAAATATAGG # Right flank : TAGATAAAAATCGCTCTAGTGGGCGCTTTTTGTTATTTTGAAGTTCAAAAGTTCTTGAGGCAAAATGTCTCTTAGAAGTTTGAATTGCAAAAGAAGACAAAGGCTATCTATTTTTTGTAAAAAATCCGAAATTTTAGTATAATAAAAAGACTAGAAGTATGAGGTAATGCTATGGAAATGAAGCAAATTAGTGATACAACGATTAAGATCACAATAAAATTAGAAGATTTAGAAGAACATGGAATGGAGATGTCAGATTTTCTTGTTCCGCAAGAAAAGACAGAAGAGTTTTTCTATGCAATTTTAGATGAGTTGGAAATGCCAGAGAGTTTTTTGGATAGCGGTATGCTCAGTTTTCGTGTAACTCCTAAACCAGACCGACTGGACGTGTTTGTCACCAAGTCTAAGATTGATAAGAATCTGAACTTCGAGGATTTGGCGGATTTGCCAGATGTAGAAGAGCTGTCTCAAATGTCTCCAGATGAATTTTTAAAGACATT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGTAACCTATATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //