Array 1 36750-38037 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTZI01000017.1 Pseudomonas aeruginosa strain AZPAE13864 AZPAE13864_contig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 36750 28 100.0 32 ............................ TTCTTGAACTGAGCAGTCCGCAGGTAGTAATC 36810 28 100.0 32 ............................ GCGAAGCAGCAGAGCATGCACGGCGTCAGGAA 36870 28 100.0 32 ............................ AGATCAAGCGCTTCCCCTGGCCCGAGCCGCAA 36930 28 100.0 32 ............................ TCACCACCCTTGAAGATCACCGTTCCGCAGTT 36990 28 100.0 32 ............................ TTGCTGAGCGCGTCCTCGGGGAAGAGCCTTGT 37050 28 100.0 32 ............................ TTGATGGCGGCGTCGCCCAGCTTGGCCACGAC 37110 28 100.0 32 ............................ AAGGGCGAGCGGCGGTATCGGGTCAACCCCGA 37170 28 100.0 32 ............................ AAGAAGCGTGCAAAGGAGCTTGCGAAGCTTTA 37230 28 100.0 32 ............................ AAGTGATGGCATGGATTCCTCTCTTGCCGTAT 37290 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 37350 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 37410 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 37470 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 37530 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 37590 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 37650 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 37710 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 37770 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 37830 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 37890 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 37950 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 38010 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 22 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48570-46562 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTZI01000017.1 Pseudomonas aeruginosa strain AZPAE13864 AZPAE13864_contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 48569 28 100.0 32 ............................ TGGCAGGCCGAAGTGCGCAGTCCGTTGACCGA 48509 28 100.0 32 ............................ TAGCCGCCGAGACCCAGGCGCTAAGGGAAGAA 48449 28 100.0 32 ............................ ATCGAGTTCGTCCGCCTCCGAACCCATCAGTT 48389 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 48329 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 48269 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 48209 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 48149 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 48089 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 48029 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 47969 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 47909 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 47849 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 47789 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 47729 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 47669 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 47609 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 47549 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 47489 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 47429 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 47369 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 47309 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 47249 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 47189 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 47129 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 47069 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 47009 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 46949 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 46889 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 46829 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 46769 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 46709 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 46649 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 46589 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 34 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //