Array 1 213212-211108 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYFP010000005.1 Salmonella enterica subsp. enterica serovar Jerusalem strain 5079-2 contig00005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 213211 29 100.0 32 ............................. CGGCCAATAACGGCTGGTTTATGCAGTTCACG 213150 29 100.0 32 ............................. AGCACAACGGGGGCGTGATGGAACAACAGGCC 213089 29 100.0 32 ............................. AGCGCTTGCACTGCCTGAAATACTACCCGGAC 213028 29 100.0 32 ............................. CGGCAAATCTTACCGGCGAAATGGTTAACAAC 212967 29 100.0 32 ............................. CCGGTAAATCCGGCTTTTTTTTCGCCCCCTGC 212906 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 212845 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 212784 29 100.0 32 ............................. GCGGGGATTATGGGGTTTGCCGGCGATGGCAA 212723 29 100.0 32 ............................. GTATCGCTGCTGGTATCGGTGACGGCCTGAGC 212662 29 100.0 32 ............................. CGTGACCGTATCGTCAAACGGTAAACGTTTTA 212601 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 212540 29 100.0 32 ............................. GTTAAGGAGTGAGCATGGCTAAGACACAAATG 212479 29 100.0 32 ............................. TGGCGCGCTAATCCGCCATCGGTACGTATCAC 212418 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 212357 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 212296 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 212235 29 100.0 32 ............................. GTAATTGGCTTGCGCGATTGAATGTTTCATCG 212174 29 100.0 32 ............................. AGATTCTTTTCCTTGGGCCATTAACTCTTCAT 212113 29 100.0 32 ............................. GGGCGAAAACGCGCTTTGAAATTCGCACGGTC 212052 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 211991 29 100.0 32 ............................. CCGGACGACCCGATGGGGATCCTGCCGTTGCT 211930 29 100.0 32 ............................. CGCCAGTTCTTCAGCTGGCAACGACAGAATGC 211869 29 100.0 32 ............................. TTCTTATTAGTAGTTTTGAAATCCCCGCAGCA 211808 29 100.0 32 ............................. GCATCGATGAAAGCCAGCATCATTACGCTGCG 211747 29 96.6 32 ............................A GGAGTTGGCTGGTACTGATGACGCACGCCAAC 211686 29 100.0 32 ............................. CAGATTGACATTAACGCCACGATAATTGAACG 211625 29 100.0 32 ............................. GGGTTTAGCTCGGTTTGCTATGACGGCCAGTA 211564 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 211503 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 211442 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 211381 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 211320 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 211259 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 211198 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 211137 29 100.0 0 ............................. | A [211110] ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTCCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCAAAAACCTCCGCATCATTACAACAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 231741-229883 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYFP010000005.1 Salmonella enterica subsp. enterica serovar Jerusalem strain 5079-2 contig00005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 231740 29 100.0 32 ............................. CGCTCACTAAATGGATGGTTGCCGGGATATGG 231679 29 100.0 32 ............................. CAAAACACTGGCAGGCAGTGAATAATCAGGCC 231618 29 100.0 32 ............................. GGGTATTGGGTTATTAAAGACCTGAGCGAAAC 231557 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAC 231496 29 100.0 32 ............................. GGAGGTGATAACCGCCTCGCTGAACGCTACGC 231435 29 100.0 32 ............................. CGCAGGTGCTGGCGGCCAGTGAGCTGGGCTGG 231374 29 100.0 32 ............................. ATTTTCATGGCCAGGCCGGGATCGGTGGGGTT 231313 29 100.0 32 ............................. GATAACGCAGCCGTTATGCTCGCAGAGATAAA 231252 29 100.0 32 ............................. CACATGGCCCGATCCGTTCCGAGAGTCTTTTT 231191 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 231130 29 100.0 32 ............................. ACACTGCCGATCTCATTGTCCGCGCCCGCGAG 231069 29 96.6 32 ...............T............. GCGGCGTCAGATTATTTTAACATTACGCTAAG 231008 29 100.0 32 ............................. ATAGGCAGTATCAAATTGCGGCGTGGTTGATT 230947 29 100.0 32 ............................. AATGAGTTAGCTGATTCATGGTTAAATGAAAA 230886 29 100.0 32 ............................. GCTATCTCTTCTTTCACTGACCTTGCCAGGCC 230825 29 100.0 32 ............................. CGAAAACCGCCTCAACACAATTGCAAATACGC 230764 29 100.0 32 ............................. CTTCTGGTGGTATCGCCGCCGGGATGGTGGCA 230703 29 100.0 32 ............................. GGAACAGCAGGGCGCTGGCTATCAATCTGATG 230642 29 96.6 32 ............................T GAATCCGCTGGTCATGGTGGCCCAGGTATTAA 230581 29 96.6 32 ..A.......................... ACAAGCTACGCGGTAAATTCTGGTAATTTCAC 230520 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 230459 29 100.0 32 ............................. CATTTTAACGGTCATGAAATCGGCGCTGGTTA 230398 29 100.0 32 ............................. GTCCGTTGCCACTGTTGCCGCCTGGCGGGATT 230337 29 100.0 32 ............................. TGCCGACCGGAAAACAACAGACAACAAATAAT 230276 29 100.0 32 ............................. TCGGGTAATGGCGGGTTGTGGTTGCGTTGGCG 230215 29 100.0 32 ............................. ATGAAGGACGAGAAACAAGCGGCGAGCCTGGC 230154 29 100.0 32 ............................. AGCTTTGGGGAGGGGTTGTTTCGTTTGGTGAG 230093 29 100.0 32 ............................. GTTCATCTAGGGAAATAGACTCAATGAGAGCG 230032 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 229971 29 96.6 32 ...........A................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 229910 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGTTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //