Array 1 3701-3006 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDKM01000002.1 Pararhodobacter oceanensis strain AM505 Contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3700 36 80.6 30 .ACCAAT...........G................. TGTCATCAGCCGGTCCAGCCATGCGAACCA 3634 36 100.0 30 .................................... GGTCCCCATGCCCGATGCAAGCACGGTCAG 3568 36 100.0 30 .................................... GCCATCACTCATCCCCCTTGTTCGGCGCTG 3502 36 100.0 30 .................................... CGCCGCAGCCGCGTGGGCAAACAACATCGG 3436 36 100.0 30 .................................... AACTTCCGGCTGCGGGCGCAGTATTGCGAG 3370 36 100.0 29 .................................... CCGCGTATCGTTCAGCGCTGATCTACTAC 3305 36 100.0 30 .................................... TGTTGCTTGTCGTCGGTGTGCGTGGTGGCG 3239 36 100.0 30 .................................... GCCGCAGGCGTCAGTCCGAACTCCGCCAAG 3173 36 100.0 30 .................................... TGCGCGCTTCATCGAGCGCTGCCTTGCTGC 3107 36 100.0 30 .................................... ATCTACCCGAAGGACAAGCTACCGTTCGGC 3041 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 98.2 30 GTTGCGGCTGGACCGCGAATTTTGAACAGCTATAGT # Left flank : GATTGCCGCAAGCGCCTCACGGGTGGAGGTCGGTGTGGCGGTGACAATGGTGCTGACCTACGCCCCCCGCGACACTCCCTAGCAAGGGACGCAGATCGCGCGCGCGTCAGAAGGCGTGGCAGTGGCACAGAACCCGCCAAGGCTGAAACCCTGCAAGGCTCCTCTTTCCGCTTCAGCTATCGAATCTGGATTTGGCTTACCGGCCTCCGCACCACTCCCAAACCCGCCGATACATATTGCCGCCAGAACAAGCACGCTCCATCAGCCGCGCTTAGTCCAAATAGACCAGCCCAAACCGCAAACCCCTTGAAAAACAGGGGCTTCCCAAGACCATCTCGGCATTTCTGGACAGAAAACTGGTGCGCTGAAGGGAGTCTACTTGGTGAATTAACGCTATATTAATATTAGATAAAAATTCCACAGTATAGAGAAATACCCCCAATAATACCCCCAACGCCCCTTGCGACGGATCGTGTGGGCGTTGCAAGAGCTCAGGATGC # Right flank : CGATCTCTAACTAAGCTTTTGATATAAATGGATTTAGTCAGAGATCCACTATGGTGTTTCCAGACGAATCGCATCAAAACATCACCAGCTGTTGCGGATTTTCCCGAGGCGTCTTGCGGCCCTGGTCCGAGAAATGCACAATATCACGATATTGGCGATCGGTGAAGTTCAGGATCTGGATATCGCCGGACTCGGGCAGATGACGCTCGATGCGGTTAACGCGGGTCGCGAAGGCCTCTTTGCCGTTTACGAAACGCGCATAAACGGAAAACTGGCTGCGCTCGAACCCCTCGTCCAGCAAAAAATTGCGGAAATCCGTCGCGTCCTTGCGCTGCTGTTTGGTGTCGGTCGGCAGGTCAAACATCAATAATATCCACATAAGGCGATATCCAGACAGATGGTGTGGCGTGGCGGTCATGTCCCCAGCCCGCGCAGAACCAAGGGATCGGGGGGCGAGGGTAGGGCGAGTGTCAGCGTTCCAGACGCGAAGCTTTGCCCCA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTGGACCGCGAATTTTGAACAGCTATAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGCGGCTGGACCGCGAATTTTGAACAGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.00,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //