Array 1 172431-173690 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTJL01000003.1 Listeria monocytogenes strain FSL L7-0408 NODE_3_length_377900_cov_17.536076, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 172431 29 100.0 35 ............................. ACTGCAAGACCTTCATACAGAATTATTGATACCGC 172495 29 100.0 36 ............................. AGCGGATACAAAAATAAGGAGAAAAAAATGATTAAA 172560 29 96.6 37 ..............A.............. AACGTCTGAACCTTCTTCAATATCGCGAATTTTGAAG 172626 29 100.0 36 ............................. AAAACAAGAAGCCGACTTCAAGAAAAAACAGGACGA 172691 29 100.0 37 ............................. TAACATTATCCGGAGCTTTTTGAGCAGCTTGAGCTAC 172757 29 100.0 36 ............................. AATTAAATCGCTCATATCCGACATGTTAACACCTCG 172822 29 100.0 36 ............................. AAAGGTTCGGACTTGGAGAAAGTAGCCGACTATTTC 172887 29 93.1 35 ...........CC................ AGAATTCACATTAGAGAATGGAGCAACGGGATATG 172951 29 100.0 35 ............................. TTTAAAGCACAATTATTTTCTGCTGTTTCTCTGTT 173015 29 100.0 36 ............................. CTATACTATATGTAGGTGTATATAGTAGTGGTTCCC 173080 29 100.0 38 ............................. GCGATTTCTGGTAGTTATGTAATCGCACTAGCAAAAGT 173147 29 100.0 35 ............................. CACAATGACTTAATGCTTTGCCTTCTGTTAATAAA 173211 29 96.6 36 ..............A.............. TAGAATCAACCTTTCAAATAATGAATATAGACTTAG 173276 29 96.6 35 ..............A.............. AGATGTTTCATGGCACTTTAATAGTGCAGCGAATA 173340 29 96.6 35 ..............A.............. TAAAAACCCAGTCCGTGCCCGTATTGAACGCTAGC 173404 29 100.0 35 ............................. TGCGTTACGTCGTCCAACATGCGACACAGTTCGCG 173468 29 96.6 36 ....A........................ GTGGTTTCAGAGGCTGTGGCTGATTGGTTTGAGGAA 173533 29 96.6 33 ..............A.............. TAGCTTGCAGATTTGGTACTGATGAAAAATAAA T [173561] 173596 29 100.0 37 ............................. GAAAAAGCACTTTTCAGTACTCGTTCGTTTTCTTTTT 173662 29 82.8 0 ......A........CA.A....A..... | ========== ====== ====== ====== ============================= ====================================== ================== 20 29 97.8 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GGCGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTTATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGTAAAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAATACCGGAGACCGACAGAAAGTTGTAAGTGGTTGGAGGAAGGGAAGTTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGATCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCTCCTCCATACACAACTCCACCATCCATCAAACAAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTTTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCAAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCACTAG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 189281-190925 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTJL01000003.1 Listeria monocytogenes strain FSL L7-0408 NODE_3_length_377900_cov_17.536076, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 189281 29 100.0 36 ............................. AACGCGGCGGCAGCTGAACCTAGCGCGACTTTAAGC 189346 29 100.0 36 ............................. AATCTCCTTATTTTTTTGATATTCGTTCATGTCAAA 189411 29 100.0 35 ............................. CTAACAATGATGCGTAAGACCGCAGTTGTTAATGC 189475 29 100.0 35 ............................. TCCCATCAGATAAGCCGGGCTTGTTTTCAAAATGA 189539 29 100.0 34 ............................. CCAACTGCCCACCGACTTGCCAGTTCTGAGTTTT 189602 29 100.0 36 ............................. GACTTTAAATCAAGTCCAATCAAAATGTACAAGGCA 189667 29 100.0 35 ............................. ATTTCTTGCACATCACCAACACCGTATTCTTTTAA 189731 29 100.0 35 ............................. GTATGCGTATGTCGTAGCTTGTGTAATGTCACTGG 189795 29 100.0 37 ............................. ATACCTTAGACTTAAAAGAGACTTCTAAAGAGAATAA 189861 29 100.0 36 ............................. AATCTTTAGCTATTGGTCTTGAGAAAGCTATCGTAA 189926 29 100.0 35 ............................. GCTGATAGCCCCTCGCGTAATGTGTCCATGTCCTT 189990 29 100.0 41 ............................. AAAGAAACACTGATTTACATCGGTATACAACAAGACGAAAT 190060 29 100.0 35 ............................. AGATTCACAACTCCTAAACCATACTCCCAGTAACT 190124 29 100.0 35 ............................. TTACTTTTTATCATCGTCGCTTGATTTCTAGTTAA 190188 29 100.0 34 ............................. GCAGAATACATCGCATTAGCTGCTGTATTTCCCA 190251 29 100.0 34 ............................. AATGCCGCTGTTGCTGACCCTAACGCTACTTTCA 190314 29 100.0 35 ............................. TTTGCCCTTCTCTTTCGACCACAATCCCAGCAACT 190378 29 100.0 34 ............................. AATGTTTTACATATTGCTGTATAAAATGTCTAGG 190441 29 100.0 37 ............................. CTGCTTTCTTGATAAAATCTATAGTATCAGTCCCTTC 190507 29 100.0 35 ............................. ATAGTTTTCGGGCATATTTGCAACTATATCATCAA 190571 29 100.0 36 ............................. ATGCTTTCCAGGTTCAGCAGATGCCACTTCCTTCAC 190636 29 100.0 35 ............................. CTGTTTAAAAGTCATTTCGGGTACATCGTATTCTT 190700 29 100.0 37 ............................. AAACAAACAAAAACAACAAGACTACTACATTGTTCGC 190766 29 100.0 36 ............................. AATGAACTTTTGCAGATAATGGACATGATAGACGAT 190831 29 100.0 36 ............................. AACGCATTAAATGGCGTGGATTTATCGGATGTTAGA 190896 29 93.1 0 .......................A....C | C [190919] ========== ====== ====== ====== ============================= ========================================= ================== 26 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTCTAATAGCGTAAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGTAGAATGTCTTTAAAGGTTTTTAGCAAAAATCCGAAGGGATAAGTTATGATTTTCACCCGATTTTTAAGAGGTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGCAGAAAATAGAGCGG # Right flank : CTTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATTCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCTGCAAGAAAGCCATTATAAAGCCCTTGATTCGCGAATAGCGTCTGTACTTTCTTATTCGCAAGGAGTTCTTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCAATCATTACGATGAAAGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //