Array 1 50-738 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSNJ01000114.1 Acinetobacter baumannii strain ABUH642 contig_114, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 50 29 96.6 31 ............................T GCAGCTACTCGACATGTTGGTAGGGCAGATG 110 29 96.6 31 ............................C AGTCGGCTGGTGCTAATTGAATAAAATCGTT 170 29 100.0 31 ............................. GATTGAGGCGATTTTTATCGCGGACATTGCC 230 29 96.6 31 ............................C AGTCCCCGCTTTGAAGCATTCCCATCAGTAC 290 29 96.6 31 ............................T CACAGCTATCGTCTGGCTGCCGTCGCGTAGA 350 29 93.1 31 A...........................T TATTATTAAACGGGAAAAGTATATTCTTGCT 410 29 100.0 31 ............................. TACTATTATAATGATCTAAACCCATTACAAC 470 29 100.0 31 ............................. TCATCAATAAGTTGGCCTTGATTTAAATAGT 530 29 100.0 31 ............................. GATACAAACGAGTTCGCATCTCGACCAGAAG 590 29 100.0 31 ............................. TTATCCAGATAAAACCATATCTACAAAGTGG 650 29 96.6 31 ............................T CAACCTGAACACAGACATACATGTTCTATTG 710 29 82.8 0 ...GC...................AT..T | ========== ====== ====== ====== ============================= =============================== ================== 12 29 96.6 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : CATAGATGATTTAGAAAATACTATTATAATGATCTAAACCCATTACAACG # Right flank : TTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTAC # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 500-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSNJ01000064.1 Acinetobacter baumannii strain ABUH642 contig_64, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 499 28 100.0 32 ............................ TTTAACCCACTGTTGTAAATCTGGATCTGACA 439 28 100.0 32 ............................ CATCGGTCGATGTAGATGGTAATGCATACCTA 379 28 100.0 32 ............................ TGAGCCTCAAACAATTACCGTTCTTGGGGTTA 319 28 100.0 32 ............................ CATTGTTGTTGATCTAACATTGGGTGAATTAA 259 28 100.0 32 ............................ AAGCGGATTGTAAGTGGTGCTACATCAATTTA 199 28 100.0 32 ............................ TATGTCTTTAAATTCTGAAAAAACACTTGTTC 139 28 100.0 32 ............................ GAAAAAATTGAAAACTTTTTAGAAGTAAATGA 79 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : AGCCACACATGCCTAAAAACGCAAGTGCGCTCAGTTCGTCATCGCCCAGATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: R [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 5590-8132 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSNJ01000064.1 Acinetobacter baumannii strain ABUH642 contig_64, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5590 28 100.0 32 ............................ GTTCATTTCTAATGCACAGTAAAAATTGAAGA 5650 28 100.0 32 ............................ TGCAACGGCTTACCATCACCAGTAGTCTTATA 5710 28 100.0 32 ............................ AGTAGTCTTATAAAAAATGTTGCGGTCCATCG 5770 28 100.0 32 ............................ TAAATATGATCCTAACGCTGTGGCTCCGCCAA 5830 28 100.0 32 ............................ AAGAATTACCTTCTCAGAGCTAGTCATTTGAC 5890 28 100.0 32 ............................ TTTTGCTCTACTTGTAGCAATTTAGTTTTAAA 5950 28 100.0 32 ............................ AATCCTATAAAATTTAAAAGTGTTGATTTTAT 6010 28 100.0 32 ............................ AACTCATACAGCGGGTCCAAGAGCCTATGGTA 6070 28 100.0 32 ............................ AAGACCAGTTTTGAAGGATATTAACTTTTTAT 6130 28 100.0 32 ............................ TCGTGCTTGGGTATCACATATTGATGTGACTT 6190 28 100.0 32 ............................ CACTAATCTCTTTGATTTAATTAAGTTTCAAC 6250 28 100.0 32 ............................ ATCCGCATCATCAAAAATCGCAAGTGGGTTTG 6310 28 100.0 32 ............................ AATAACGACGGTTGCGCTGTTGCACGTTCAGC 6370 28 100.0 32 ............................ TTGATGAGAAACTGTTATTGTGTATGTCTCAC 6430 28 100.0 32 ............................ ACGACAGGTAAATTGGTTGCCATGTGTATTGA 6490 28 100.0 32 ............................ AATTGTAGAAAGCGTATCACTTATTTGCTTAT 6550 28 100.0 32 ............................ ACGGATTACCTACAGGTTTACCAGTTGCATAA 6610 28 100.0 32 ............................ TCTTGAAGGTGAGCCAACAAAAATCCATTTTT 6670 28 100.0 32 ............................ GTTTAAATCCATAAATGAATTTTGCGGTTTTT 6730 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 6790 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 6850 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 6910 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 6970 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 7030 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 7090 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 7150 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 7210 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 7270 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 7330 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 7390 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 7450 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 7510 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 7570 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 7630 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 7690 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 7750 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 7810 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 7870 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 7930 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 7985 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 8045 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 8106 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 43 28 98.7 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : AGAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //