Array 1 524-25 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYKK01000109.1 Enterococcus faecalis FL2 contig00128, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 523 37 100.0 29 ..................................... GAAATAAATTTTGAAAAAATGCATAACAC 457 37 97.3 29 ....................................T TACCCAATCTTCGTAGCGCGCATCTATTT 391 37 97.3 29 ....................................C GCCAAAGAAATATGGAACACCTTACCAAA 325 37 100.0 29 ..................................... AAGATCAGTGGCTAGTTACGAAGAAATAA 259 37 100.0 29 ..................................... TAGTTTTGAAGGAATGAAAAAGCTAGGTG 193 37 97.3 29 ....................................G CCTACTTATTTTTTTGATTTGAGATTACA 127 37 100.0 29 ..................................... ACGTAGCATTATTTTTTACCCATATGCAT 61 37 97.3 0 ....................................G | ========== ====== ====== ====== ===================================== ============================= ================== 8 37 98.6 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Left flank : TCATGGAGAAAAAATAATTCTCCGA # Right flank : GGATATTTTGAATTTATGTTATAAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 30390-31152 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYKK01000045.1 Enterococcus faecalis FL2 contig00048, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 30390 37 97.3 29 ....................................A AATAGAAAATTCCACGACTCATTACCGTA 30456 37 97.3 29 ....................................A GCCAATCGAGATAATCCAACGGACGTACA 30522 37 100.0 29 ..................................... TAGAGTAATCATGGCGTTAATTGGTGCTT 30588 37 100.0 29 ..................................... AAATTATTTTCCGAATCTCCCTTTCAAAT 30654 37 97.3 29 ....................................C ACTTATCTTGTTAGCTATGGCAACCATCG 30720 37 97.3 29 ....................................G TTAATATCAGAATAAAGTTTGATATCACA 30786 37 97.3 29 ....................................A GCTTTTTTAGCTAATGCACCTTCGTTTTC 30852 37 97.3 29 ....................................A TCGTGGTACGTATCACAACCGTTGTGTTC 30918 37 97.3 29 ....................................C GAAAATGAAAAAGAAGTTGCTGAACATTG 30984 37 100.0 29 ..................................... GATGATGAACATCATAAGAAATACACAAA 31050 37 100.0 29 ..................................... TGTTTCTTCAACTGCTTTAGCAATTTGCT 31116 37 97.3 0 ....................................G | ========== ====== ====== ====== ===================================== ============================= ================== 12 37 98.2 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Left flank : CACAATTAAATGATAAACCAGAAGTCAAATCAATGATTGAGAAGTTAACTGGAACAATTAGTCAATTAATTGGCTATGAATTGTTGGAACATGAAATGGATTTGGAAGAAGATGGCATCACTGTGCAGGAACTTTTCAAAGCTCTTGGAATCAAAATCGAAACAACGAGTGATACGATTTTTGAAAAAGTTATGGAAATTACACAAGTACATCGTTATTTATCAAAGAAAAAATTATTGATTTTTATTAATGCGTGTACGTATTTGACAGAGGATGAAGTGCAACAAGTGGTAGAATATATCTCTTTAAATAATGTGGATGTCCTGTTTTTAGAACAAAGGGTGGTCCAGAACAGATTCCAATATATTTTGGACGAAAACTTTTATTTGAGTTATGAAAAAGCTTAAATTGTTATTGATTAGTGGTTCATTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAGTACGGAACTTTGGAGAAAAAATAATTCTCCGAG # Right flank : GATATTTTGAATTTATGTTATAATTATT # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 78469-78102 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYKK01000091.1 Enterococcus faecalis FL2 contig00107, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 78468 37 100.0 29 ..................................... AAGACCACATGCAGCAAAATCTCGCAAGC 78402 37 100.0 29 ..................................... TGATTTCAAGGGGGATAGCGCAAAAACGG 78336 37 97.3 29 ....................................T CAATTAGAAAAGTTGCATGTGTATGTCTT 78270 37 97.3 29 ....................................T CCTTCACTACCTCCCATAAGTATATATTT 78204 37 97.3 29 ....................................T AACCATGATCCTGATCCCACTCCATCCAC 78138 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================= ================== 6 37 98.7 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Left flank : CAGTTTAAACTGTTTTATGATGTTAAACAAAACAGCCTTGAAGCAAAGTATAAATATGATTTTCAGTATTTAGATTCTGATGATTTAACTAACTATGATATTTTCATATCTTGGTACGAAGAAGTAAAAAATGCTGTAGAAAATCCCCAAGAATTTGGATTTTAGTCACTTGTTGGAGAAACTTATATGACTAAAATATTTGAAGATGAATTTATGGACTGGCAAGCAGATATGGTGGATATTGCAGATGAGTATATAGAAGGACGAGCAGAAAACATTTATTTATATGGTTCAATAGAAGATGGTGGTTATTTCTTTAATTTATTTTTTAAGATAAAGGGTAAGATTCTTTTTATGCACCAAGTTAATTCTGTATTGAGTGAAAGTGAGAAGCAATTTGATATTTCACAAGATAGACAAGAAACAGTCCTAATAAACTGAAATCTAGCTATGGATAAGTGATGCGAGTACGGAACTTTGGAAAAAAATAATTCTCCGAG # Right flank : TTTGCTGAAGTATTACCTTCAGTTGATTTGTTTTAGAGTCATGTTGTTTAGTTTTCGCAGATACGATTTGATTGATGTAAAAATATCGTTAATATGTATAAATGTGATTGTTATATAAAAAATATAAGTAATAAATTGAAGCTTTGCTAGAGCAAGTGATGCGATTACGAAATTATTTAATTTTAGAGTCACGTTATTTATTACTTTGCGAATAGAGAATACGATTATCTATAAATCAAGAACTAATCCCCAATTTATTGAAAATGACACTCCCTGTTTTATTAATATTTCATGCTTTTGTTGTACTATTTGATGATACAAAAAAGTAAAACTGAGGACCCAATTAAAGTCAAGTTAACCACATTGAAAGATAAACCTTTCAATGTGGTTAAAGATGCTTAATGAGATTCATGAAACATAGAGAGCGGATTAATTTCCTATGCTCTTTATTTGTATATTTTCTTGGGAATCATTATTGATTGTGGATTAAAAAGATAATC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 10444-9813 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYKK01000100.1 Enterococcus faecalis FL2 contig00119, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 10443 37 100.0 29 ..................................... TGTTCAACAAACCAATCGACAACTGTTTG 10377 37 97.3 29 ....................................C GTTCTTAATTTTTTACAAACTGAATTACA 10311 37 97.3 29 ....................................A TATGGTAAATTAGTAGTGTGAGAAGTGTA 10245 37 97.3 29 ....................................A GGTGTTTGTTTCGAAACGGCTGCAATGAG 10179 37 100.0 29 ..................................... ACTTCAATTGCAACAGTAACACCTGTACA 10113 37 100.0 29 ..................................... TATCTGTTAACTTGTCAAAAATGAGAGAG 10047 37 100.0 29 ..................................... TACGTATATGTTTCGTCTGTTATGTGAAA 9981 37 100.0 29 ..................................... ATCCTGAGCGAACACCACCAACACCAAAA 9915 37 100.0 29 ..................................... ATTTATGGCGTGCGCGTTCGGTTTGACAA 9849 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ============================= ================== 10 37 98.9 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Left flank : GGAATCATGGAGAAAAAATAATTCTCCGA # Right flank : TTTCAAATGGATTATGCTTGGAACCATGAGTTTTAGAGCCATGTTGTTAAAAAACAAACTATCACCTCAAGCAATCCGTAATTTTCATCACAAGATTAGAATTTTTATCATCAAAGACGAGCTGCTTCAATTTTCAAAAACTAATCAAGTGATAAGTCAAAATGTTGATAGATTGAGATTAGTTCTTCCTTTTTTTAGGAAGGGCTTTTTTTATTGATAGAAGAAAGGGAAGAAATCTTGGGAGCACCTAAAAAAATTGTGAGAAATGCTTCTGTATTGTTTGGTTTCTGCCTCAGAAAGTTGTATACTTAGATTGGAATTATTCTATATTACATGCATTTTCACACTTTTTGGAAAAGTTCACTTGAATTTTCTTTTAGTTTCGTAGATAAAAGGAGTCATCGCTAATGGAAATGAACAATTCAGGTAAGCTTGTTTCTTTGTGTGGAGGCAAATCAGGGAGGAAATAATATGTTTGATATTGTAACATTGGCGAGAAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //