Array 1 25459-26281 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRVW01000009.1 Escherichia coli strain KCJK8071 NODE_9_length_155166_cov_21.716645, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 25459 29 100.0 32 ............................. AACTCAATCACGGTTGAATCGATCCCCTCTGT 25520 29 100.0 32 ............................. TCATTATTTTATTTGCCTCGCCGCCCATTAAT 25581 29 100.0 32 ............................. CGCATTATTATGGCTACGGCTGGCGCGCTCGC 25642 29 100.0 32 ............................. CTGCTGTTCGAGCTGGTGGAGTGCTGCTATAG 25703 29 100.0 32 ............................. GTGTACCGCCGCGCCATCTCATACGTAACAGA 25764 29 100.0 33 ............................. GATTTATCGAATACCACCACGGCACCGGCAAAA 25826 29 100.0 32 ............................. ATACAGACACCCTTTGTTCTGCTGTGGCAAGA 25887 29 100.0 32 ............................. TATAGGCCGCCCCTCCAGTGCCAGTAGTACCT 25948 29 100.0 32 ............................. TACAGTGCTTTTGGTGTGACGGGAGGTAACGT 26009 29 100.0 32 ............................. ACGTTGCCAGCATGTCCGGGCGACTACTGAAC 26070 29 100.0 32 ............................. CGGGCCGTGCTGGTGGGCGGCGCAGAGCTGGA 26131 29 100.0 32 ............................. GCAGCACCACCCTGACTTTGCGGCTAAACGGA 26192 29 100.0 32 ............................. ATTAGCCCCGCCTGACCCTGCTTAATGTTCTG 26253 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATTCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTGAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCAGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCATGACTACGCGCAATTGCCAGCGCTCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1157-2222 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRVW01000050.1 Escherichia coli strain KCJK8071 NODE_50_length_2345_cov_12.453562, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1157 29 100.0 32 ............................. GCTATCGGGTGTGGATACCGCTTTCGAGGCGT 1218 29 100.0 32 ............................. ACTGACATTGTCAGCCACAACCTTACAGCGTG 1279 29 100.0 32 ............................. TTATCGCGGCGCTGGCTGCCGCTGGCGTAGCC 1340 29 100.0 32 ............................. TTTCTGGCGACAGTATCGATTCTGACACGATA 1401 29 100.0 32 ............................. GAATAGCATGAATGACGCGCTAGAGCGGGCTT 1462 29 100.0 32 ............................. GGGATTGGCCCCAACCGCTAACCACGAGGTTT 1523 29 100.0 32 ............................. ACATAGCAACAGGACTAACTTTATGGTCAGCC 1584 29 100.0 32 ............................. GCCAAAAACAACATGATCCTGGCTCCCGGTCA 1645 29 100.0 32 ............................. GCCGCGCCGCACTGGCGCTGGCACGGTATGCA 1706 29 100.0 32 ............................. CCTGCTGGCGGATATTGGATATTTTTACCGCG 1767 29 100.0 32 ............................. ATATTCCTCAGCATCTCGTCCCTCTCCATAGT 1828 29 100.0 32 ............................. CCCGGCAACAATAATTGCCTCGATTTGATAAT 1889 29 100.0 32 ............................. AAAGTAAATACTAAAAGATCTTCGTCAGAGAA 1950 29 100.0 32 ............................. ATTCAATACCCGATAACCGCACGATCCGCCGC 2011 29 100.0 32 ............................. CATTCGCAACGGTAGGAATTGTGATGGCGGCA 2072 29 100.0 32 ............................. GGATAGAAACTGCGCTCGCGGCGTACCAGATA 2133 29 100.0 32 ............................. GGTACAAAAGAGGCCCCATTCTGGCAGGGCTC 2194 29 93.1 0 ................T...........A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACCCATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTCCCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGCGGCATTAATTTTCGCTGGAGTGAAAATTATTGCGGCAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATTAAGCGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCATAATAGTTCCCCATGCCAGATAAGTTCACAATTATCGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //