Array 1 588557-589320 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB946332.1 Enterococcus caccae ATCC BAA-1240 acvJM-supercont1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ======================================================================================= ================== 588557 34 97.1 33 .................................T GGAAGCGCGTTTACAACCGTTTCGACGATTGGT 588624 34 97.1 34 .................................T CGCTGGTTTAAAAATGTTTAATTATTTAGAAAAT 588692 34 100.0 35 .................................. CCTTGGTATACTTTATCTATCAGCAAGTGGTCTGC 588761 34 100.0 32 .................................. AATTTAACAACTACGGTATCGTTAACTTTGAG 588827 34 82.4 87 ............................NNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 588948 34 79.4 34 NNNNNNN........................... AACAATTTTATAACGGTAGAAAAGACCTATAATA 589016 34 100.0 35 .................................. CGCTCAACACCAACAACCTATACAACTCTACAGCC 589085 34 97.1 33 .................................T ACCCTTTTAGCTAGACGTTTTTGGTCAAAATTA 589152 34 88.2 33 ..................TG........G....G CAGCAGTTCCGGCTTTCGTGCTTTTTGTTTTCG 589219 34 88.2 34 ....CA....T......................T GTGGGAGAGCTTTTTAAAACCAATAGCTGAATGG 589287 34 94.1 0 ................GA................ | ========== ====== ====== ====== ================================== ======================================================================================= ================== 11 34 93.1 39 GTCTAGCTCTGTATAGAGCTAGTGGATTTAAATA # Left flank : TTGTGGTTTAGCATAAATGAGAAAGTGGTGACACTGAATGTTGATATTAATAACCTACGATGTCGCAACAAGTTCAAAGAATGGTACTCGCCGTTTAAGGAAAGTAGCAAAGAAATGTCAAGATTATGGGCGACGTGTTCAGAATTCTGTTTTTGAGTGTATAGTTGATGCGACAGAATTGACGAAGCTGAAGAAAGAACTGAATGATTTAATTGATGAGGAAGTAGATAGTTTGCGCATTTATCGATTGGGTAATAATTATCAAAACAAAGTTGAACATATAGGTGCAAAAGAAAGCTTCGATATAGAGGGTCCTTTGATATTTTAGCATTAGTAATGTGGTGCGGACCTAAAGTGCACATGAAAACACTGAGGGACCCGCACCAATTTTTTACAATATTATGTTTTAAAACGTCTGTTTTCCTCATTGAAATTTAATTTTCATCGTTGTTTTTTTATGAAGTGATAACGATAGGTCATTTATTTTTGTCATTTTCACG # Right flank : AAGGATTACAACGCTGAAATTGTCTGTAAGACTGAGGACTAGCTATATATAAAGTTAATCTTAGATAAATGGGGACAGATCAAATGGAACTAAATCAAAGATAAAATACACAACAAATGAGAACGATTCTGTGTGTTGTGTAGAAAATTTTAAAGTTAGAGGAATTGGATTATATCACTGAAAAAGAAAAAAGCTCTTATAAAGAGCTTTTTTAGTTATAAGATAAAATCAAAAAAACGAAGAAAGTAAAAAAATAATAGCTAGAAAATAAATGAAAGATATTTTCATTTGTTTTTTATTTTAATCTTATTTGTTATCTTGTTATGTTAACAAATAAGAAAATATATATATAATTAAACCTACATGCCGATAATATAATGTTTTTTACGGTTTGTCAATACTGTTAGAAATAATTTTTTAAAAAATATTTATATCTTTAACTTTATATCTCGTTGTTTAATGGTGTTTTGGAACGGAATGTGTTCGCCGTCAAATCGCCG # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.42, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTATAGAGCTAGTGGATTTAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.64%AT] # Reference repeat match prediction: F [matched GTCTAGCTCTGTATAGAGCTAGTGGATTTAAATA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 770834-770200 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB946335.1 Enterococcus caccae ATCC BAA-1240 acvJM-supercont1.4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 770833 32 100.0 36 ................................ CCACGCTGCAATTTGAGCGTCTAGTGCTGCTTGGTC 770765 32 100.0 33 ................................ TCTCTTGGCTGCATCTGATAATTGCCCATAGCC 770700 32 100.0 35 ................................ ACAGACTGAAATAGAAAAAGGTCATAACTACCCTA 770633 32 100.0 35 ................................ CCTCTTGTTCGCTGTACTAGCTAAACCCATTTTAT 770566 32 100.0 35 ................................ CAAGATGATCTGCCATATCAGCAAAACCATTATTG 770499 32 100.0 35 ................................ TTGCACTGGTTGTTGAGCTTGTCCGCCCCAATCAT 770432 32 100.0 34 ................................ CGTACCCGTGAATATGGGCAAATATGCTTTTTAC 770366 32 100.0 36 ................................ AATTTCTGTTCTTGGGTTTAAGCTGTATAACTTTTG 770298 32 100.0 34 ................................ CTCCTCTGCTGGTACAGCCGTTTCTTTAATCTCA 770232 32 90.6 0 ..................A...A....C.... | A [770215] ========== ====== ====== ====== ================================ ==================================== ================== 10 32 99.1 35 GTCTCACTCTATTTGAGTGAGTGGATTGAAAT # Left flank : TACTAAATATGGAGATGGTGGTGCAGACATATTACCACTATTCCGTTTAAATAAGCGTCAGGGAAAAGCTTTACTGAAAGAACTAGGTTCACCAGCTGAATTATATACGAAAATCCCAACAGCTGATTTAGAAGATGACAAACCCTTAGTGGCAGATGAAGTAGCACTTGGGGTGACCTATGAAGATATTGATGATTATGTTGAAGGAAAAAAAGTATCGGATAAAGCCAAAGCAACAATTGAAGGCTGGTATAAAAAAACACAACACAAACGTCATATGCCAATTTCTATATTTGATGATTTTTGGAAATAAGGAATAAACGATTTAATTTGGTGCGAACCCCATGTGCCCATGAAATCACTGAGAGATCCGCACCAAAATAAGAGAGGAAAAAAGCTATATTCGGCTTTTTCCTCATTTTATTTTAATAATCATAAGGATTTACGTAGAAATTTAGTGATTATCAATGATTTATAATAGATAATCATCATTTTTCACA # Right flank : CACTTTTTAATCCGAGTGTTGTAGGCATTATTCTATATGAATTAGATTTTGAAATTTTGGCATCGTATAAAAAATATCAAATGAATGAAGGAAGACTAAACTTTTAGCCTTTCTTTTTTTGCTAAATTTGGAGTAAAGCATCTTCATTTTGTGCAAATGGTTAAAAAAAGTGTAAACTTAAACTAGTTATCTGAAATAATCGATAAATTACTCTACAATTAAGTTAATTAAAGCAAGAAAAAGGTGAACGAAAATATGAAAAAAATGTTTAGGAAAAAAAGAGATATTGATAACGAAGAATTTCTTTCATCTGAAGAAAAAATACGAACAATCAATACTAATGATATTCGGATCCCAGATAACGTCGTAGGATTGTCTGATCAGAAAGTACAACAATTATACGCAGAAGGAAAATATAATAAAGAAGTTGAAGATTTATCTAGAACAACAAAACAAATCATCTTAGATAATTCGTTGACGTTATTCAACTTTATCAATCT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTATTTGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: R [matched GTCTCACTCTATTTGAGTGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //