Array 1 625180-628913 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822042.1 Streptococcus thermophilus isolate STH_CIRM_1358 chromosome STHERMO, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 625180 36 100.0 30 .................................... ACAAGAGAGACAGAGATACTCACGCACTAG 625246 36 100.0 30 .................................... GAGACAGTTCCAAAACGTTTCCGCAAACAA 625312 36 100.0 30 .................................... ATGGTATCTATCTAGCATGAAAGATAGTGC 625378 36 100.0 31 .................................... CTATTGACGATGGTGTTTGGGATGATGAACG 625445 36 100.0 31 .................................... CAGTTACATCTAGGTCTAATTGATGTGCCAA 625512 36 100.0 30 .................................... GCGAGCGAAAAATAGAAAATCTAACACTTG 625578 36 100.0 30 .................................... ATTCATTCTTGATAAAAATACTTTCATCTG 625644 36 100.0 30 .................................... CAAATGTAAAAAGATATACTAAGTTAAATG 625710 36 100.0 30 .................................... CCGTACAGAAACGTACCGCTTGCATCTGTT 625776 36 100.0 30 .................................... TAAAATGATTAATTTTAAATTACGTTTGCA 625842 36 100.0 30 .................................... TACAATTCCTGAAATAAAGGGTAAAAAATC 625908 36 100.0 31 .................................... ATGAGGGGATATATGAAGCACATTCGGATGG 625975 36 100.0 30 .................................... TACCACTTCTAGATAGCATTCATCTGTATC 626041 36 100.0 30 .................................... TTGCGCCAAACTTCCCTTGCCACTGTTCCT 626107 36 100.0 30 .................................... CATTGGCATTGGCTTCCCTCCTCTTGAGTA 626173 36 100.0 30 .................................... TCGACAATCTCATATTTGTCTTCATCTTCG 626239 36 100.0 30 .................................... TTTACTTGAAAAATAGTAAAGTCTCTCTAT 626305 36 100.0 30 .................................... CGAGGAACAAAAACGCTTCGAGGATTGTAG 626371 36 100.0 30 .................................... AGTACACGGTGACACTTACGACGGCGAAGA 626437 36 100.0 30 .................................... CAAATATCCTTCGTCTTCCAATCGTAAATT 626503 36 100.0 30 .................................... AAAGGAATATCAAATAGCGACTTATAAGCC 626569 36 100.0 30 .................................... ATTGGTCGTTCTACTGTTAAACCAGTTTTG 626635 36 100.0 30 .................................... TCTGACTCTAGCGCAGCCGCTCATAACGTG 626701 36 100.0 30 .................................... TGGTGACTGTTCCGTCTGGGTTTTCTGCGT 626767 36 100.0 29 .................................... ATATCTACAGGTCACTACAAAGCTACGCT 626832 36 100.0 30 .................................... GTATCCATTAATATAGTAGCATTTCTATCA 626898 36 100.0 29 .................................... TTAATATTCTTTTCATTCATGTTCTCCTA 626963 36 100.0 30 .................................... GAAACATTCGGTACGTCAACATCTTCTACT 627029 36 100.0 30 .................................... CAACGAAATTCAATTTACTCGCTTTAATAT 627095 36 100.0 30 .................................... TTGGCTCAAAGCCTTCTGATTTACATACAT 627161 36 100.0 30 .................................... ATTCGATGAAGGACTTGAAACCTTCGTAGT 627227 36 100.0 30 .................................... AGTAGAGAGACCAGCACACTACTGTACTAC 627293 36 100.0 30 .................................... AAATGGGAGAGTGGAGCTAGTATCCCAACG 627359 36 100.0 30 .................................... ATTGCCTTACAAAGCAGTTTCAGCGACAGT 627425 36 100.0 31 .................................... TTATGGTCTTTGTTCTTTTGTTCAATATGCT 627492 36 100.0 30 .................................... ATGGCAGCATGCAGGTGTTGACGGTAGCTT 627558 36 100.0 30 .................................... AGCCCTATATCACCTTTAGTGCGATATTCT 627624 36 100.0 30 .................................... TATTTTCCGTCTTTAGGTGCTGTGAATGTT 627690 36 100.0 30 .................................... AGTGCAACTAAATACCCCAAAAATAAATAT 627756 36 100.0 30 .................................... AAATGGTCAAATTGTCACTTGTAACTGTTG 627822 36 100.0 30 .................................... AAACATTTATAAAGTTGTTTATTAAATTCA 627888 36 100.0 30 .................................... GGCAGCTTGTACACTTAGCAGGTATGCCGA 627954 36 100.0 30 .................................... TGATAGAGCTAGAGTTATCTTTCTTCCCAA 628020 36 100.0 30 .................................... CATAACCAAGTACCTCTGCCACATCTTTCC 628086 36 100.0 30 .................................... ATGGAAGCATAACAGAAGCACCTCTTGCGT 628152 36 100.0 30 .................................... GAATACTATAACATTTAACTGTATCCATTA 628218 36 100.0 30 .................................... ATAATTTAGCTGCGGTAGTATAGTACTATC 628284 36 100.0 30 .................................... TAATATAGTAGCATTTATATTAAAAAAAGC 628350 36 100.0 31 .................................... CTTTCGAGCAAATGGTTGAGAACAGTCGGCC 628417 36 100.0 30 .................................... TTCAAACTTAGTTACGAGCTTGCTTAGGTT 628483 36 100.0 30 .................................... TTGGTATCTATCGAGCATGAATGACAGTGC 628549 36 100.0 29 .................................... CAACACTTGAAGTATAATATAATCAAGAT 628614 36 100.0 30 .................................... TTTTGATAAAGAAATTATGTTTTTTTTGCA 628680 36 100.0 30 .................................... AAGCAACGCTTACGCAAGTGATCCACGGTG 628746 36 100.0 30 .................................... TATCCTTGGTTTCCACTTTCGCTTCGAACT 628812 36 100.0 30 .................................... ACCATTAGCAATCATTTGTGCCCATTGAGT 628878 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 57 36 99.9 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCACAAACATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCATGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1334732-1333772 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822042.1 Streptococcus thermophilus isolate STH_CIRM_1358 chromosome STHERMO, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1334731 36 100.0 30 .................................... GAAAAAGGCTCACTCAATGATTACATCTGG 1334665 36 100.0 30 .................................... TTGTAGAAGCTCAAAAGAGTTTGCCAAAAT 1334599 36 100.0 30 .................................... TTTATAGACTCTGAGAATACGATATAGAAT 1334533 36 100.0 30 .................................... AAGAAACTATTTAAAAGATTTGTGTTTATA 1334467 36 100.0 30 .................................... CGGAAAAAATTGAAAAAATCGATAAAAAGT 1334401 36 100.0 30 .................................... ATACTTGTCTGAACCATTCAGCATTGGTAT 1334335 36 100.0 30 .................................... TCTTCATCTCCTTGTCTTTGTAAATCTCGG 1334269 36 100.0 30 .................................... TGGTAGCAAGACTGGAATTTAAAGTAAAGG 1334203 36 100.0 30 .................................... AAGAAGCCCTTCTAGTTGTATCACCTTTCT 1334137 36 100.0 30 .................................... GGTAATAATTAAAAATATCAAACTCGAAGA 1334071 36 100.0 30 .................................... CTCTCCATTTCTGGTTTTTAAAATAGGCAC 1334005 36 100.0 30 .................................... ATAATATAAGTAAAGATAGCAGTAGAGAGA 1333939 36 100.0 30 .................................... TTTAACCCAGACTGGACGTAAGCGTTATTT 1333873 36 100.0 30 .................................... TACTTACGATGGCGAAGATTACAACTACAA 1333807 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTGGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAAATGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTGGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAAATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //