Array 1 5978-5771 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTGR01000308.1 Streptomyces sp. st170 scaffold308.1.size6286, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5977 28 75.0 33 ACAC......GTC............... GCCCTGTCCAAGGTCCGGCATGACGGGGTCCTG 5916 28 100.0 29 ............................ TCGAGACAAGAACGAAGCCGCCGCATGCG 5859 28 89.3 33 ............G.......A..C.... GCCGAGAGGCTGGCAGCCCAGAATCGCGGGTTG 5798 28 92.9 0 ..T..........T.............. | ========== ====== ====== ====== ============================ ================================= ================== 4 28 89.3 32 TGCTCCCCGCCGACGCGGGGGTGTTCCG # Left flank : CGCTCCGGACGGGCCGAACGACGCCGAAGGCAGGTGCTGCCAAGTGCAACCCGATGTCGCCACGAAGACGATCGCCGCCAGCACTTCCCGGTCGCCGTGTCGACGCCGACCACCGCCCTGCGGCCGGGACGGCGCCTCCGGCACCACCCGCTGGAACAACTCCCACAATTCGTCCGGCACCAGACGCTCAACGATCCCCACCATGACTCACAGAGTAGCGAGTCGCCCAAATGAGATGGCCTCTAAGGAACACCCCGCCTCGGCGGGAAGGACTCGTCCGTGATCTGGCACGAGCAGTACGACCGCGG # Right flank : CCGTGCGATCGAGCCCTGACCAATTCGCTAGGCATCAGCCGCACAACAGCGTTACTCGCCTTGCTCCGACCGCATCGCATCAGCTTCGCGTCGGAGCTCCTCCACCTGTTCGCGGCGGGCATCAACGCGTGCCCGAAGTCTGTCGACCTGAAGCGCTACCGCATCACGGACCGCAGCATGTCGCTTCTTGCCGCGTCGCAGGTGGCCCACCGCCTGCGTCATGGCCACCACCGCGGGGACGATGGTGACGGCTCCGAAGCCGACCATAGTCGAGACGAGCATGTACATGGCCAGGCCGGGACGGGGTCCAGGGTCGTCAGTGGCGAGCCAGCGCAGAGCCTCAAATTCGGACAACAAAAGAGCCGCAACAACCGCGGCCCAGAGTGGATTCAGGAAGGCTGGCGGGAAGACCCTCGTCTGCTCCAGGCCGTCGTCAAGCCGTTCACCGATTTCCTTGTTGAGCTCGACCAGTTGTTCCGAAGTTGGGCGCTCACCAACGC # Questionable array : NO Score: 3.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGCTCCCCGCCGACGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCTCCCCGCCGACGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 46-1049 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTGR01000030.1 Streptomyces sp. st170 scaffold30.1.size48310, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 46 29 100.0 32 ............................. ATGTCCTTCTCGTACGGCAGGCCCGTGGCCCG 107 29 100.0 32 ............................. CACACCCACGGCCCGAGCTTCGGGCGTCGGGT 168 29 100.0 32 ............................. ACGGCTGGCGGGGAGGGAGGGGTGCCCGGCGG 229 29 96.6 32 .............A............... GTTCTGCGCGAGATCAAGGTCATTGGTGCCGA 290 29 100.0 32 ............................. CCACACCCGGTGTCCGTCGGGGGTCTGGGCCT 351 29 100.0 32 ............................. CTCCGCTGAGTGTGCTAGGTCGTCCAGGGTGA 412 29 100.0 32 ............................. GCCGAGCGCATCGCGCAGGTCATAGGCGTCGA 473 29 100.0 32 ............................. GCCGAGCGCATCGCGCAGGTCATAGGCGTCGA 534 29 100.0 32 ............................. TCCCCGCCGCCGAGTTCGCCCTGAGACGCCAT 595 29 100.0 32 ............................. GACCCCGAGGTGGTCCGCGCGTACTGGCGGGA 656 29 100.0 31 ............................. TCCGGGCACTACGGCTGATGCAGATCAGCGC 716 29 100.0 32 ............................. ATGGTGCTGTACTCGTTCATCGTGTCGGCGAG 777 29 100.0 32 ............................. CCAGACCGGCCCTGACACCCACGGAGGTAGAG 838 29 100.0 32 ............................. GTGCTGCACTGGCGCGCGGAGCGGGAGCTGGA 899 29 100.0 32 ............................. CTCGCGGTCGGCGGGATCGTGGCCTTCGCTCT 960 29 100.0 32 ............................. GACGAGGACCCCGAGCTGTTCTTCCCGATCGG 1021 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : CGGAGGTGAGCCGCTCGTCGGGTACAGCTCGCGGTCGGCGGTCGGG # Right flank : GGAGAAGCTGGTCACCGGGTAGTTCTCCTCGGCTTGCGGGCCGCCGTGCCGTACACAGCGGCCCAGGGGCGTTGGTTCGCCAGGTGGCACACGATCTCGCGGGGCGTCACGGACTGAGTGAACAGGGGGACGTGATCTTGAGACCATCATCCAGATCGTCAATCCGTCGCTGCTCGACGACCTCCGCGAGCAGAAGAACACCGGGAGCCCTTCATGACCGACGCCTTGGTGGCCTTCCTCCGGGCGCGGCTCGACGAGCAGCTGGAGAAGGCACGCTTCGCAAGCAGCACGGTGGCTAAGGCCCCCGAGCGGTTCGGTGTAGATCCCGAGCAGGCCGCGGCGCATGCCCGGTTCTCCGTCGCCACCGCCGAGGTGCACCTCGCACTCCTGGAGGACACCGTCATCCCGCACCTGGGAGCAGGTGGGGCAGCCGACCGGAATGCTGAGTACCAGCTGCGGCTCCTGGCCGCCCCCTACGTCGAGCACAAGGACTACCCGCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1631-3184 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTGR01000030.1 Streptomyces sp. st170 scaffold30.1.size48310, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1631 29 96.6 32 ...G......................... CGGTGCCCGCGCTCGTGCAGGCGTGGGAGGAG 1692 29 100.0 32 ............................. ACGGTGTCCGGGTCCGTGTTCCGTAGTCCGAT 1753 29 100.0 32 ............................. CGGGTCTTGCCGAGGCAGGAGGCTTCGTACTC 1814 29 100.0 32 ............................. GTGACAGGCTCCTCGTCGGGGACGGCCCGAAC 1875 29 100.0 32 ............................. TGGACCCCCGCCGGGTTCAAGGCCAAGCACGC 1936 29 100.0 32 ............................. GTGCCGTTGGCCTTCCACGACCACGCGGGCTT 1997 29 100.0 32 ............................. GCTGGCGGTACGGCGTCCTCGACGCGGGCACG 2058 29 96.6 32 ..........................G.. TCAGCTTTCTGACCGGGAACCGCTTCGACTTC 2119 29 96.6 32 .....T....................... GCCAACGAGGCCGGAACGGACACGGGTCTGCG 2180 29 96.6 32 ............T................ CACTGCGGGCCCACGTGCGAGGCCGAGTTCCC 2241 29 100.0 32 ............................. GCCCGGCCGACATGGTCGTCGCCGAGGCTGAC 2302 29 100.0 32 ............................. ACCGGCCTGGCGAAGAACGCCACCGAGGCGTT 2363 29 100.0 32 ............................. GTGGTTGTACGGCCGGACGCACCGTTGTCCAC 2424 29 96.6 32 ..........................T.. GCCGACGCGATCGCGTACGTCGCCGAGCACGG 2485 29 96.6 32 .................A........... ACGATCGACCCCGCACGACTCCCCAGCTCGTT 2546 29 100.0 32 ............................. TTCGGGCGCGAGGCGCGGTTCCGTACGGTGCG 2607 29 100.0 32 ............................. ATGCCCCCCTTCGCGAACCCCTGGTACTGAGA 2668 29 100.0 32 ............................. GTCTGCTGGGGAATCGGCCTGATCGTCGAACC 2729 29 96.6 32 .........................A... CAGGCCGGTCGCGGCCTCCTCGCCGGGCTGAA 2790 29 100.0 32 ............................. CGCAGCGGAGGCGTGTCGGTGGTGAACCCGGA 2851 29 100.0 32 ............................. GTGTGCTGGGGAATCGGCCTGACCGTCGAACC 2912 29 100.0 32 ............................. CACCGATCGACGTGAAGCAGGCCCGGAAGTGG 2973 29 96.6 32 ..T.......................... CCGGAGCATGCCGCGCGGTTCGAGGCGTTGGG 3034 29 100.0 32 ............................. ACGTCTACGCACCGGGTGCCCGCGTCCCGATC 3095 29 82.8 32 ..........G.G...TAA.......... AGGCCGAGCGGCGGCAAGAGGATGCGCAGCGT 3156 29 93.1 0 ........................G...C | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.0 32 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : GGTGGCACACGATCTCGCGGGGCGTCACGGACTGAGTGAACAGGGGGACGTGATCTTGAGACCATCATCCAGATCGTCAATCCGTCGCTGCTCGACGACCTCCGCGAGCAGAAGAACACCGGGAGCCCTTCATGACCGACGCCTTGGTGGCCTTCCTCCGGGCGCGGCTCGACGAGCAGCTGGAGAAGGCACGCTTCGCAAGCAGCACGGTGGCTAAGGCCCCCGAGCGGTTCGGTGTAGATCCCGAGCAGGCCGCGGCGCATGCCCGGTTCTCCGTCGCCACCGCCGAGGTGCACCTCGCACTCCTGGAGGACACCGTCATCCCGCACCTGGGAGCAGGTGGGGCAGCCGACCGGAATGCTGAGTACCAGCTGCGGCTCCTGGCCGCCCCCTACGTCGAGCACAAGGACTACCCGCACGACTAGCGCTCGACGGCAAGTCCCCTGCCAAGGTGGTGACCTCGGCTACAGGTCACAGACGAAGTCGCCCCACAAGTTCCC # Right flank : CGCCGAGCGTGGTCCCTTCGATCTCTGGTCCGGTTGATCGCCGGGTACGTTCGTGCCCTGACTCCACAGATGCGTCTGCTCCTGATTGAACCCCCGGCACCACCGGACCGGATTGTCCGAGTACGATCAGACTGGAGTCTGTCCCGGGCCCTCAACGCCTCGCGCGGTCGTGCCCCTTTGCCATGCTGTCAGGCTGCGTCTAGGGCTTTCTGGTAGATGTCGCGGAGCCGGCCGCCGACGTCGCACCGGCCGAGACGGCTACAGCCGGCGCAGTCCGTGGTGTGGATCAGGTAGTCCCGGTAGGCCGCCTCGTGGGCCTGCTGGGCAACAGGGGTCAGGCCGCGCTGCTCCCGGCACGGGGCGCACGCGTACAGGGCAGCCCCGGGGCCCGAGTTCTGCTCGACGATGTCGACCATGACGGCGGTCCCCGAGGGGCCTTTGTGCCAGTGGCACCAGCCGAACGGCGCGGGCGCTGCTGTGCTCGATGGTGTAGCCATGCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 5513-5772 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTGR01000030.1 Streptomyces sp. st170 scaffold30.1.size48310, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5513 29 89.7 19 .C..C........A............... TACGCCGCCGAGACACCCG 5561 29 86.2 32 ..A...........CA............A GTGTCGTCGCAGTCCTCGCCGTGCCGGAGGCT 5622 29 93.1 32 .......G...............A..... TTGAGGGCCAGGGGCATCGCTCGCTCGCCCCG 5683 29 93.1 32 .........................A..A GCCGGGCTGGCCGCAGCCCGCCGCGCCCCGCT 5744 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 92.4 29 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : CGCTGGAACGCCTGGAACCGTTCCCCGGCCCGATCCGTTGCGTACCCGCGGCGGGTCTCCAGGCGGAACGCCGTGTGCTCGAACTCGGCGAACAGGTGGGTGATCTCCTCGAAGGGGACCAGTGGCACGGGTTACTCCTTGGGGGCGAAGCGGGTCAGCAGTTCGCGGGGGATGACGACGAACGTCTCGTGCTCCCCGACGTCCCGCAGCTGCGCCAGATCCTCGGGGTTGGTGAGCTGGTCACCCTGGACCACGATGTCACCGGTCTCGACGACCTCGTACAGGGTGGGGCAGTTGCCATGCTCTGAGGTGGTGCCGATGAACCTGAGCGTCACGACAGGGCTCCGTTCTCGCAGGTGAGGCACCAGCATGCAGGCGACGCAGCGACCATGGGGGCCGGTTGCGCAAGATTGCGCGCTGACCGCTGCCAGGGGGCAGCGAAAGGGCCTACGCTGCCCATCATGAGCGGGATCGGCTGAGGCAGCGCACCCACTGGGTTA # Right flank : GTTTACCGGTCTGGCTCTGACGGGCCGCCAACAGGATCCCAGCGCGCCCGACCCCGTCTCACGCTGCGGGTCTAACGCCCCGGTGACAGCAGCTTTACGATGGATGTTCATCGATGCTGGGAGCCCACCGTGCTGGATCACACCCCGGACTACCCGCCGAAGACCCCACCGCCACCAAAACGGCCGATTTCACCGCCGCGCCCCGAGACGAGCCTGGAGGGAACGGGCCGGGCTCGCATGCTGGTGCGGAACCGGCGGTCGGCGAACTGGTCGCTGGAAGCAGCCCCGTGGGCGGCGCAGAAGGCATCGGTGTGCGTGTTGGGCCAGTTGCACGAGTGGGGATACCGACAGACTGATGAGGCAGCGGCTGGACTGACGAACCTTCTGGTACACACTGCGGTCGCGGACGGCGGCCGCCGCGTGTCTGTACACCTCGCAGACCAAAACCGGCAGGCGTTGATCGTCGTCCTGTCTCACCAGCCGGGCCTCGCCGTCGCAGA # Questionable array : NO Score: 3.39 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:-1.5, 6:0.25, 7:-0.29, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1496-46 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTGR01000065.1 Streptomyces sp. st170 scaffold65.1.size30769, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1495 29 86.2 32 CA..........A..........A..... ACCGAGGCGGCGCTGTTTGCGGCGTCGCTCCT 1434 29 100.0 32 ............................. AGCCAGCCCCAGAAGGGTCCGCGGCGCCCCGC 1373 29 96.6 31 ...G......................... GGGCCGGGCTGGCACCCGACCCTTCATCGTT 1313 29 100.0 32 ............................. CCGTTGGCCCCGTTGCCGATGGCCTGGCAGTC 1252 29 93.1 32 ...T..........G.............. CCGACCCACGGCGGTGAGGGCACCCCGTTCGA 1191 29 96.6 32 ......................C...... TCGGCACGGGCGGACACGTTGTGAACCTCGGC 1130 29 100.0 32 ............................. GCGGGCAGGCTGCCGGACCGCTTCACGTTGCT 1069 29 93.1 23 .........................TG.. GATCCGAAGCTGGTCTGGATCGC Deletion [1018] 1017 29 79.3 0 TA................A....CG..A. - Deletion [989] 988 28 86.2 32 -.AG....G.................... GAAGGCCCCCAGGGCCTGACAACTGCGGCGCA 928 29 96.6 32 .C........................... ATGGCCGCGATCGTGGCGGCAGCCAATGTCCG 867 29 100.0 32 ............................. CGGTCCGGCGTCCCGATCGCGATGCCGCCGGG 806 29 96.6 32 ............................C ACTGAGCCCCCGACCATGCTGTGGTCGGGGGC 745 29 96.6 32 .........T................... GCGATGAAGGCGTCGTACCGGCAGGCGTATGA 684 29 100.0 32 ............................. TGCCGGACGGCGCGGCCGCGGATCCCGCCGTC 623 29 96.6 32 ............................C TCGGGGCGCCCATCCGCACCGTCGGCAACCTC 562 29 100.0 32 ............................. CTCGCGGTCCTCATCCCGGTCGCCGAGGAGGT 501 29 100.0 32 ............................. GACTTCGCCGAGGCCATCGACGCCGAGCGCAC 440 29 100.0 32 ............................. CGCTGAGACGCTGGCTTCCAGGGTGCTGGTTC 379 29 100.0 32 ............................. GCGGCCAAGGCTGCCTACCCCCGCACCCTCAC 318 29 100.0 32 ............................. GCGGCGCGGTACGCGGCGGCGGTCCAGGCCGA 257 29 100.0 32 ............................. TCGACTCCGGCCTTGCCGAGCTCGCGCTGGAG 196 29 100.0 32 ............................. CTGACTCGGTCCTGGCCCGTCACGGCGTGGTG 135 29 100.0 32 ............................. ACCCGGCCGACCGGTGCGTCCTGGCGGGTGGC 74 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 25 29 96.7 30 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : GCCGCTATTGAATGGTGGGAACGCCAGTCCAACGCCGGCGGGCTGGAGCCATTGCACACCACCGCCCACCCGCTCGCCACTGTACGAGGCCAGCAGGGTTCCAAGGACCCTGCTGCAAAACAGAGAATTCAGCATGCCCGCACGCAATTCGATGGGACAGCGCGAGTACTCGACACCGAACTGCTTCGCGAAAAGATCACTACCGGCATCGGGCGCGGCAAGGCATACGGATGCGGACTTCTCAGCATTGCTCCCACTCGATGAATTCAACAGAGTGCCGACCGAAGCCGTGCCAGGCTCCTGATCGGAGTGCTCCTACACGGCAGCGACTTCTGCGTTTCTTCCATGACTGCCCTTGCGCGGCAGTGACAATAACTCGCCCACCAGAGTAGTGTACGGAAGGTGGCGTCGCTGTCCGCGCGAATTTATGTGAACCGCTTGGCGTGAGTTGCGGAAAGCAGCGGAATGACGTCGAGGATCGTAAAGCGAGGAAACGTTCG # Right flank : GCTCGTCGGGTACAGCTCGCGGTCGGCGGTCGGGTGCTCTCCGCGC # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.13, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 10195-13007 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTGR01000065.1 Streptomyces sp. st170 scaffold65.1.size30769, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10195 29 72.4 32 T...G.CGT.......A..GC........ GTCACGATCGGGGCCGACGGCAGCCTGATCGT 10256 29 72.4 32 ...T...GT...G..A...G..C..C... GTGTTTCGGCCTGCGACCTAATCCTGTCGGCA C [10261] 10318 29 82.8 25 .....T......T........A.AG.... GAGGTACTACGGGTCGGGTCGGGGG T [10322] Deletion [10372] 10373 29 96.6 32 .............A............... GCGCAGACACCGGCCTTGCCCGCACCAAACTT 10434 29 96.6 32 ..A.......................... GACGGATGGTGGATCGTCACGAGCACCACCAC 10495 29 93.1 32 ............T.............A.. TCGTACGCGTGGAGCCAGCACTGGCGGCACTC 10556 29 89.7 32 ............TC..............A GAGTCTGGCGGCACCCCCACCCTGGACTACGA 10617 29 100.0 33 ............................. AGGATCAGCAGGTCGACCCCGATAACGTGCCGC 10679 29 86.2 12 ...........AT...T.....C...... TACCTGGGGTCA Deletion [10720] 10720 29 93.1 32 .G...G....................... GACGTCGGGCGCGGTCTGATCCTGGGCATGAC A,T [10727,10730] 10783 29 96.6 32 ........T.................... GTGTTCCGGAACGGCCCGTACGTCATGGGTTT 10844 29 100.0 32 ............................. CTGGGGCGTCCGTGGAAGACGGACAAGCTGCG 10905 29 96.6 32 .......T..................... CCGTGCTTCCGGATCCCGTGCCCCGACCCGGT 10966 29 100.0 32 ............................. ATGGAAAGCAAGGGGACCGCCGAGGTCGGCCT 11027 29 100.0 32 ............................. GACCTCCTGCCCACCGTCCAGGGGTTCGTGAC 11088 29 96.6 32 ..........T.................. TACAGGACGGGGACGTTGCCATGCACCGCCAG 11149 29 96.6 32 .........................T... GCGCTCACGGACGCCCGCGCCGAGGCCGGGAA 11210 29 93.1 32 ..........T..............T... AACGACGTCATGGACGGCATCCGCACCGTCTC 11271 29 96.6 32 .........................T... ACGGTGGAGGAGGACCTGCGCAACGCGGTCTT 11332 29 96.6 32 .........................C... CCCTTCGTCCACGGCGATGCGGCGCGTCCGAG 11393 29 96.6 31 .........................T... AACATTCACCCCTACGTCGAACAGGTCGGGA 11453 29 100.0 32 ............................. AAGGCGTCCACTCGGGCCACTGTCCTGGTTCA 11514 29 89.7 33 ..C.......................T.A GCGCCGCCGTCGCTTCCCCGCCGTCTACACCCG 11576 29 93.1 32 ............T.G.............. GAGGGCGTGACCTCCTGGGCGTAGACCCTCTG 11637 29 93.1 32 .....T.................C..... CCGCATCACGCCACCTGCCCGTCCCCGCCACC 11698 29 100.0 32 ............................. GGGTGACGGCATCCCACCGGCCCAACGCTCCC 11759 29 100.0 32 ............................. AAGGGGATGGGCGAGGGGTCAGGGCTTTTCGC 11820 29 100.0 32 ............................. CACGCGGCGAGCCTCAAGCGCAAACAGAACTG 11881 29 100.0 32 ............................. TCGACGTCCTCGAACTTCGTCTTGGGGTGGTC 11942 29 100.0 32 ............................. ACCGAGGACACGTTCTGGGCCAACCTGATCGG 12003 29 100.0 32 ............................. GTCTGCGGGGTGCACGACCTGCTCGGCGAAGA 12064 29 100.0 32 ............................. AAGCCGCCGCTGCACGTGTACCACGTGGCAGT 12125 29 100.0 32 ............................. GTCGTGGGGGACTTCCTCGCCGCGCACCCCAC 12186 29 100.0 32 ............................. TGTCCTGGCCGAGGTAGAACTCGTCGGGGCCA 12247 29 100.0 32 ............................. GACGAACAGTCCGAGTACCCGGGTTCCCAGCG 12308 29 96.6 32 ............................A TCCCGCCTGTCCCCCCGCGCCCCCGGCTCGGC 12369 29 100.0 32 ............................. TCGGTGTGGGGCGGAGAAGTGCCGGCGGCGCA 12430 29 100.0 32 ............................. CCCCGCCGGGCAATCCGGCGGGGCTTCGTCGT 12491 29 100.0 32 ............................. CTCTCGACACAGGCCGACATCGACGCGGCCGA 12552 29 100.0 32 ............................. ACGGACGGGATTCTCAAGTCCCCGTCCACGGC 12613 29 100.0 32 ............................. TTCGGCGAGCAGCACCACCCCGACATCGACCC 12674 29 100.0 32 ............................. CTCCCGCAGGGTGAGGCCCGGGACCAGGCGGC 12735 29 100.0 32 ............................. AAGGGGAAGTGACCATGGAACCGGACCTGAGT 12796 29 100.0 32 ............................. CCGGTTACCGGGCTGCAGCTGGGCCATCACCT 12857 29 100.0 32 ............................. GCGGCCCAGTTCAGGGCCTCGGGCAGGCGGGT 12918 29 100.0 32 ............................. TCCGGCGCGAGCATCTGGACCGGCCTGGCCGC 12979 29 75.9 0 ..............CC..A..AGC.C... | ========== ====== ====== ====== ============================= ================================= ================== 47 29 95.8 31 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : TGCGCGGAATCCCATTGGCTCTTCAGGCGACAGCACATCGAGATGAACGCACGACCCTCTCGAGGGATGTGGCGCAACCTCGACCGTGTCTGCGCTCTGGAGAAGCAGTGTCTCGGTTCCTGCGGAAGTTCGTTCTGCGACGCGAGGTCCTCCTCGAGGTATCGCGCGTGGTGGTCAGCACGGCACTCCGTGTCCTGATCAACGAACTCGTCAGCTGGCTCTTCTGAGCCAACGGCGACGGATCCCAGAGATCCGTCGCCTCTCAACACGGCGAGGATGTCCCGCTGGCTTCCGAGGTATCCCCACTACGGCTATACCTTCCCGCGCGTCCAGCAAAGGTATCCGCGCGAGCGAGGTATAGCCGGCGCCTGGGTTGTGGGGCCTGCCTTCTCCGTCGCGTAGTCGGCTTTTGGGTGAGCGGCGGCGAGCCGGTGTCGCGCGACACCCCGCGTGGCGCGTTGCTTCAACATCCGTTCCTTGAAACGTGAAGAGCGTGATCG # Right flank : GGCCCGCACCACTCGCTCGATGGTCTTGAACGGCTCACCTCCGCTCGCGCGGAGAGCACGTGCAGCTACCCGCGATCCGAGTCGAACCCCCACCGGGCCCGACCATCACTGCCCATGAAGCACTCGGCTGGGCGGCCGTCCCCGGTGGTGCCGAGCGAGCCAATCGGTGAGCAGGCATACCCGAACTGAACGCCCTTCCGCTGCCCGCCTCCGGCCGGAGACTCCTCGGCGGGAACCGAAGGCTCAGCAGTCGTCTCAAGCGGAGCAGGACTGCGCGTCGGCTCATCCGAGCTCTCGCCGCCCGGGTCCATCACCAGGACGGCGAAGACTCCCACGAGGCAGAGTCCTATGGCCGCCCCAAAGCCCACTTTCACGAGCCATAGGACCAAGGCTAGAAGAGTACTCACTGTTCGGGGGCGAGTCGGTAGGTGGCACTGTCCGGGTCGACCTTCACGATGACGCCCGCCTCGTGCAGGTCGCGCAGTGCTTGGCGGGCCCGC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.03, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [41-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //