Array 1 43808-41015 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQYT01000007.1 Xanthomonas sp. LMG 12461 LMG12461_contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 43807 31 100.0 35 ............................... TGTCCAGCCCGCAGCGCAGCCGCAGGCCGAGCAGA 43741 31 100.0 36 ............................... ACCTGTCAAGGGCTTACCTGATGAGCGCCGTAAAAA 43674 31 100.0 35 ............................... CGCCGAAACGCAAGGCACAGCAGCAGGATCACCGC 43608 31 100.0 36 ............................... ATTCTCTTTGATTGAGGGGAATTACGTCAGCGGGAC 43541 31 100.0 34 ............................... CTTGCCCTGGTACTTGGCGATGCCGTCGGGGTTG 43476 31 100.0 33 ............................... GCGTTAGGGGGCTTATATAGGGGAAGCCTCGTC 43412 31 100.0 35 ............................... GTGAACCGCGTGCCATTGGCATCTGCTGGCACCAA 43346 31 100.0 34 ............................... GGAAGGTCTGTGTAGCCCTTGTTCCTGGCCCAGT 43281 31 100.0 36 ............................... CTTTGTCTTGGCGATGCAGTACACGCCGATGATCTC 43214 31 100.0 34 ............................... CGTTGCTGGATCCGGATTGCTTGTTCACAGCCTC 43149 31 100.0 34 ............................... TCAAAGTCAGCAAACAACCTCGATGCAATTGCTG 43084 31 100.0 34 ............................... TCAAAGTCAGCAAACAACCTCGATGCAATTGCTG 43019 31 100.0 35 ............................... GGCTTCTCTGGCGCCGCGCTTGCTTCACCGACCAC 42953 31 100.0 35 ............................... GGCTTCTCTGGCGCCGCGCTTGCTTCACCGACCAC 42887 31 100.0 34 ............................... AACGGCCTGCCGTTGATGATCAAGCACATCGCCC 42822 31 100.0 35 ............................... GTCAAGTCGTCGTTGATCGCGACGTCAATCGAGAT 42756 31 100.0 34 ............................... CAGTTCAGCGATCCCATTGCCTATGGCGTGGACG 42691 31 100.0 35 ............................... TTGCCGCTGTTGTCCGGCGCCGCGAACATTTCGAC 42625 31 100.0 35 ............................... ACAGACATCGCAGTGTCCCTGCAGGCCGGGCAGAA 42559 31 100.0 35 ............................... ACCATCGCCAAGATGATGGACGCCGACCTGCTGGC 42493 31 100.0 34 ............................... CCCCTCGCTTTTTCCACCACCGCCACCTACCGCG 42428 31 100.0 36 ............................... TTGAGGACGGTAAAGGCATCGGCCACGGTCGGCGTC 42361 31 100.0 34 ............................... TGGACCGGCACGCTGCTGGAGGACCCGCTGGGCC 42296 31 100.0 36 ............................... ATCTTCGGGGACTACCTGGCCGAGGGCCTGGCCCCG 42229 31 100.0 34 ............................... AGGTCCTCACCCAACCACTTCTCGCACTGGTCCT 42164 31 96.8 34 ........T...................... TAACCATGGGCGGCCTTCGGGCCGCCCCGCACAG 42099 31 100.0 34 ............................... AACCAGGAGGACGTGGCTCGCCATGGCGGCCCCG 42034 31 100.0 36 ............................... GTAAGTGGGTAGCACATGGCTAGCGCCATCGCGATC 41967 31 100.0 34 ............................... TGCGCACGATGGGCACGATCGCCACCGGTACCTA 41902 31 100.0 35 ............................... AGTGGAGCGGTGAAATGAACCGCCGGCACCTGCAG 41836 31 100.0 35 ............................... CCGCGCAAGGTGATTGACGACGAAGTCGCCGAATT 41770 31 100.0 36 ............................... AATGAGGGTTATATGACGGTTAGGCGGCACGGGGCG 41703 31 100.0 36 ............................... CGGGCCTACGGCTACGAGACCGCCGAGACCACGCAC 41636 31 100.0 35 ............................... TTCAGGCCCGCATCCACCAGCTGCAGCGCAAGGTG 41570 31 100.0 35 ............................... GCCGCCGACGCGCTGCGCAAGATCAGCCAGACCGG 41504 31 100.0 34 ............................... CCGTTGTCCACGAAATAGCTGGCGCCGCCGCTGC 41439 31 100.0 35 ............................... ACGATGTTTCGGTCCGGCATAAATCCCGCGATCTT 41373 31 100.0 36 ............................... CTGAAGTCGCGCGGCAAGCGGGTGATCTTCTACCCT 41306 31 100.0 37 ............................... TTCTACAACCTGTTCCTGATGCTCCAGCAGCTCGGCG 41238 31 96.8 34 ..T............................ TCGATCTTGTTCTTCATTGCGGCTTCCTCGCCTT 41173 31 100.0 34 ............................... TCGCCACGCCGCACCTGTGCGCCGGCCGCTACAG 41108 31 96.8 33 ......T........................ TCCTTGCCGGCTGGGACTCGCTCACGCATGCGT 41044 30 71.0 0 T..C....A..CAA.....C...G.-..... | ========== ====== ====== ====== =============================== ===================================== ================== 43 31 99.1 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : CGAAGATTGCGCCGAACTGCACACCGCAGCACCGGCGATCCTGCACCGCCGCGCGCCGACGCTGGTGGCGGCGTTCGCGCAACGCGGCTGGGCACTGCCGGAACGGATCGATCGCGTCTATTCGCCGCAACGGGCGCTGGACGCACTGGGCTGGCAACCGCGCCATGGTTTCGCGGAGGTGCTGCACCAATACGACACGCACGTGCCCGAGGTGCTGCCGCCCAACGACGGGCGCGCCGTCAGCGACTGAGCGCCTGGCGCTGATCGGCACACCGGGTTCGGATGGCGGAGCAAGGATGTGCGCCGTCGGCGCGAACCGGAAGCGCCCGGGGTTTTACCGGCCGGTTCGCGAATCCCGATAAGCACTTGATCGAAAAAGCGAAATGCCTGGGCACCATGAAACCGGGCAAGGCAGCCCCGCCCCCTCCACGTCGCCGCACGCCCGTTTCGCGAAATCGGCACTTTTTCCTTAGTCCCGGCCGGCAGTTATGCTGAGGGCT # Right flank : CGTTCCAGGCCCTTGGTTGCGCGGAGGCGCGATTCACGCCATCACCGCACCATGGACCTCAGCGCAGCAGCACCGAAATGCCGAGGCCGCCCTGCCAGTCCGGGGTCTGCGACGACAGGCCGCGCAGCACCGACAGATCCAGTTGCACGCGGTTGGCAAACAACCAGGTGACGCCGCTGCCGAGCGCGCGCATCTCGTCCTCGCCGCCGCCGATGCCGGCCTCGACGTAGGCGCTCAGCGTGTCGCCGGCGTAGAACGTGTAGCTCGGCGAGACGCTCCAGCCGGAGCCGTCCTCGCTGTCGCTGACATTGCCGTACAGCGCCAGGCTACGCCCATCCGGCAGGTCCCAGCCGGCACTCACGCCCAGGTCGTAGCGGTGGCCGGCATCGCCGTACGGCGCGCGCCCGACCGGCAGACTGGCGCTGCCGAGCAAGGCCCAGCTGACGCGGTCGCTGGCGCTGGGCAACGCCTGCTTCAAGCCGATGCTGGCGTCGCCGCCA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 31722-34162 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQYT01000019.1 Xanthomonas sp. LMG 12461 LMG12461_contig_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 31722 31 100.0 37 ............................... AGCTTGATAGCTCGGGACGGGCGAACGTCAATATCTG 31790 31 100.0 35 ............................... CTCGACCGCGATGCTGCTGACGAGGTCCGCGCCTG 31856 31 100.0 35 ............................... TGTGAGGGGCGGGCTTCCGCCCCTTTTTCATTGGG 31922 31 100.0 33 ............................... ATGTTCACCATGATCCCGATGCCCACCAGCGTG 31986 31 100.0 35 ............................... GACCCAGACGTGGCGCAGGGCGCTGTGCCTACTAA 32052 31 100.0 35 ............................... TGTAGATGTAGTCCATGGCTCAGGCCTCCACCACG 32118 31 100.0 35 ............................... ATTGTTTGGTCCTTTTGTCGCCGCGCCGGGATGGC 32184 31 100.0 35 ............................... AACTGGAAGTTGCCCCTTGGCGTGCCGTCGGAGAC 32250 31 100.0 34 ............................... CCAATAGGGGAGGGGGCTGCAGGATCCTGGCCGG 32315 31 100.0 33 ............................... CGAAAATCATGGGCGAGGTCGCGCTCGCCTTAG 32379 31 100.0 33 ............................... ATCATCGGGACTGAAATGGTGGGCGTAACGCAG 32443 31 100.0 35 ............................... CCGATTACGCATGCGCCGAACTCCATTCGGCGGGC 32509 31 100.0 35 ............................... GCTCGGATGTGGCCGGAAGGTGCGGGTCGGCATCG 32575 31 100.0 33 ............................... CAGCGCAAGTTCCAGTTCCTAGCGCCGACTGTC 32639 31 100.0 34 ............................... AGGCGCGACAGGGCGCAAGCCTCTGGCCCATTGA 32704 31 100.0 35 ............................... TGCAGACTCTGGGTGGGAACCTCACGGCTGGTGGC 32770 31 100.0 37 ............................... TTGGCGATCGCCGCCATGGCGACGGTGACGGCCTGGG 32838 31 100.0 34 ............................... GCGGCGTAACCGCCATGGCCGACTCTCCTGCCAA 32903 31 100.0 35 ............................... TCCTGATGCACTGCGAAGTCCACGGCTGCGTTGAC 32969 31 100.0 33 ............................... TGATGACCGCCGACACATTGACCTTCAGCCGCG 33033 31 100.0 34 ............................... AGATCCACAGTGACCTGGCTGAACCCGAGGTCGC 33098 31 100.0 36 ............................... GGCAACAACCTCTACAACTTCGCAGGGCGCACCTAT 33165 31 100.0 34 ............................... CTGTAAAAAACATGAATAGCTTTACAGATGCTAC 33230 31 100.0 34 ............................... TTTCGCCGATCATCCTGTTCGGCTACTGGCTTGT 33295 31 100.0 34 ............................... CCATAAGGGCCGCGTCAGTCTGCTTGCGGTCTGC 33360 31 100.0 34 ............................... AAGTGCCGTGACGCGCGCAGCCAGGTCGTCTAGC 33425 31 100.0 34 ............................... TGACCATCACGAGGGCAGCATGATTAACCAGCAG 33490 31 100.0 35 ............................... AACGGCCGACAGACCGCCACGTTTGTGCATGACCT 33556 31 100.0 34 ............................... ATGGACTTCGACACCGGCGGCTACACCGGCCCCG 33621 31 100.0 35 ............................... AACTCGCATTCCGTGTCCCAGCGCGAAAGCCTGGA 33687 31 100.0 35 ............................... TCGTACACGTTGAGTTGCTTGTGGCCCTTGCGGCC 33753 31 100.0 34 ............................... GTCGATCGAGGGCGTCAGTTCGTCGGCCCCCTGA 33818 31 96.8 34 .......................G....... TGCGCGCCGGCGAAGCTCAATGAGGATCGTGGCA 33883 31 80.6 31 .........................ACTCGT GCCAGATGGCATAGACGTCTCGGTGCCACCC 33945 31 96.8 33 ...............A............... TCCATCGCCTTGATCAGCTCGGCGCCCTCACCG 34009 31 93.5 35 ..............A........G....... GAAGGAACACTTGCGTTCATGGCGGGCTATGGCAT 34075 31 90.3 26 ...........G.................GT GCTGATGGACATGCCGGCTGGCAACA Deletion [34132] 34132 31 90.3 0 ...A................C........T. | ========== ====== ====== ====== =============================== ===================================== ================== 38 31 98.6 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : AAATGACAGGGACACGCGCCGCATGATGGTCTTGGTCAGCTACGATGTCAGCACCAGCTCCCCTGGCGGCGAGAAGCGCCTGCGCAAGGTCGCCAAGGCCTGCAGAGACCGTGGGCAGCGTGTCCAGTTCTCGGTCTTCGAGATCGAAGTCGACCCCGCGCAATGGGCCGAACTTCGGCAGCGCCTGTGCGACCTGATCGATCCCGGCATCGACAGCCTGCGCTTCTACCATCTTGGCGCCAAGTGGGAAGCCCGCGTCGAACACGTCGGCGCCAAACCCAGCCTGGACCTCAAGGGGCCGCTGATCTTCTGACGCGAACCGCAAGCGACCGGCACATCCCGGGGAGGTTCGCGCATTTCGCAAGCCATTGATGCAGAAGGAAAGCGCTCGCCATCCGCGCTGGACACCGACATCGACACGGTCGCGCGGCACCTCCCCGGCGCCGGTTCGCGCGAATGCCGCTTTTCCTCCAACGCGTCTCTGCACTTATGCTGGGGCA # Right flank : CCTCTCCCTGCCAGCTTTGAATCCGCACTCCGAGCCGGAAGCTCGACTCCCTGCTTTGCGTCATCCCCCGGATAGGGTGCCAGACCTCAGACGTACCCGAGCCCGCGCCAGTAGTCCAGCGGACGCCTGGCGGGCACGCCCAACGACGCCGCAATCTCGAGAATGCGCGGCACGTCGCGCCGGTAGACCACAAACAGGTGATTGTCTTCGGTGGTCATATCGTCGATTTCCACCACGTCGTAGCCGTCGCCTTCGTCCGTCCACTCGGCAAGGTGGCGGTCCAGCCAGGTGTAGTACTCGGTCTGCGTCCCCACGTTCTTGGGAAAGGCAGGGAATGCGTCGCCCATCATCTGGCAGAGCTCGTGGTGGACATCGATCATCTTGTCGCCGTTGGCGGAGTAACGCTCCATCGCCGCGGTGATCGCGACTGCATACGCCTGTTCCTCGCACTCGGTCCACTCCAGCTCCGGCAGGAAGGCTTCGATGTCCCGAACGATCTC # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //