Array 1 96260-95012 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGEB01000046.1 Escherichia coli strain NS-P035 sequence046, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96259 29 100.0 32 ............................. CCCCTTGACCTTAACGCCGCGTTTAGCGTCAC 96198 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 96137 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 96076 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 96015 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 95954 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 95893 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 95832 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 95771 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 95710 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 95649 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 95588 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 95527 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 95466 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 95405 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 95344 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 95284 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 95223 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 95162 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 95101 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 95040 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 112461-111761 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGEB01000046.1 Escherichia coli strain NS-P035 sequence046, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 112460 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 112399 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 112338 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 112277 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 112216 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 112155 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 112094 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 112033 29 96.6 32 ....................T........ GGAATAATTACCGCGCTGATTAAATTAATTAA 111972 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 111911 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 111850 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 111789 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //