Array 1 22866-23354 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADBIF010000001.1 Ligilactobacillus agilis strain YZ054 NODE_1_length_517698_cov_51.5712, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 22866 29 89.7 35 AT...............C........... AGTATTGTGTAATTTGAGTTGACCGTTGTCATCGC 22930 29 100.0 36 ............................. TGAATTTGGGCATTTAATCGACAATCAATCTACCGT 22995 29 100.0 36 ............................. CAAGGGTTATGTCATATCTGCCGACCATGGAGCCTA 23060 29 100.0 39 ............................. GTCACTCGCGCCAGATCATCATCGGCTAACTTGTGTTTC 23128 29 100.0 36 ............................. TCTTACTCAGATGGTGATATGTATTTGATGAGAAAG 23193 29 100.0 39 ............................. CTTGCAAGCTTTGCCGGCAAAAATGATGTTCTGTGAACG 23261 29 96.6 36 ............................G CAAAGCGATGACTTTGGGTTGCAATTCCCAGTTACG 23326 29 86.2 0 A...............T.A....A..... | ========== ====== ====== ====== ============================= ======================================= ================== 8 29 96.6 37 GATCTATTTAACTTAAGAGGAATGTAAAT # Left flank : ACCTATGAATGATGTCGGGGAGTTGGTGAAGAAGTATGCTAGTTAATTATCATGCCCCTAAGTATGTGTACATTGTTTGTGGTAACACTGATTTACATAAAGAAATTTTTGATTGCCGATAACTTTGGTTTAGATTTTTATGATGATTCCTTATTTTGTGGACGGAGAATGATAGGTTTAAGGTACTTTACTGGGACAGTGAAGGTTTCACACTACTTTACAAGCGCTTTGATAATGGACGTTTAACTTGGTCTCGAACTAGCGAAGAGATAACGTCCTGTTATAGAGTGTTTAGGATTTTATTAGCTATAAGGTGCATATATCTGTCGACCGAAGGTAAGGTAAAATAGTACGGGTATCGACAGATGACAAAAGGGTTGATATTAAGGGACTTGAAAGAATTTAGGGAAAAAAGTAGTATATAACTGAGGATGGAATTTGGTGATAGACAGAATGTATGTGAAACATAGTTGGTAGTATGAGGTTTTGAGGGTGTAGTG # Right flank : TTTAGCTAATAGCGACTCGAAATCAATATTGGTTATCAAGAAAGCGGGCAGCTAGAAATAGTCGCCCCTTTTCATATTCTAAATTGCAAGTACTTCATAATAGCATGTATGTAAATATGCTACTAACACGGACATGGTACAGGGGGACTATATCAAAGCGTGCTTAGCTGAATTGTAGGAGAAAGGGTTAAGCCCACGCATGTGGGGAAAATCCAATTTTTCAACGCTTTGAATGAAGTTGTCATCCGGTTAAGTCCACGCATGTGTTGAAAATCCTAACCGATATTAGGTGCCTCTATTTGAGAATACTGCTATAAATATAACCAGCCTATGATTGAATGCTCACGTTTCAATTATAGGCTGGTTTAGTTTAAGCTAGTTATCGTTGTGGTAGTAATTAATCAATTCTTCGTAGGTATCGAGGGGCTCGAAATTGAGGGTCCACTCAACTAAGGGCATATCCTCGGGGGTCAGCTTATAGGCAATTTCATTTGGATCTA # Questionable array : NO Score: 3.09 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 26067-26629 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADBIF010000001.1 Ligilactobacillus agilis strain YZ054 NODE_1_length_517698_cov_51.5712, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 26067 30 100.0 35 .............................. AACTCTGGAAGCAGCTATCAAAGCTCAACGAGTCG 26132 30 100.0 36 .............................. GACTCTGTAAAGATTTCTTGAGTTTCACGTAAAGCT 26198 30 100.0 38 .............................. CACCCCCTCGCCTGATATTCTCAGATAGTGGGGGTTTT 26266 30 100.0 37 .............................. TACTGTAATAAGCATTGGCTCCGAATTTACGTGAACG 26333 30 100.0 37 .............................. GTCAACTAAAGCTGCAACAAGTCTGTAATGCGTTTCC 26400 30 100.0 35 .............................. TGGTTCGCTGACTGGATACAAGGCAGCAGCTTGCT 26465 30 100.0 38 .............................. TTGACTAATTCCTCAGCATCTTCACCCGTGGTGTATTC 26533 30 96.7 37 .............................G CAGGATAGATGCTTTTTTGAGAGAGAACGAGATTACA 26600 30 80.0 0 ....T.......T.......A...AA...A | ========== ====== ====== ====== ============================== ====================================== ================== 9 30 97.4 37 GATTCTATTTAACTTAAGAGGAATGTAAAT # Left flank : TGGCAGAGTGGTAATGCACCGGACTCGAAATCCGGCGAACCGGTAACACCGGCGCGCAGGTTCAAATCCTGTACTCTCCTTAGATAGGGTTTTATAATGTTTTGGGACGTTCTAAACGTTGCTATATCAAGCTTTATGATTTATAAACGTTTGGTAATGTAATGCTTTTTTAGAAAAAAGGTATCCTAACAATTATAATAACTTTCCTTGGTGAGTACCGTATATTTTATATACGGTATTTTTTTATACTCTCTTTTTGTTTTTAAAAATATGCAAGTGAGATAGGTATAACTTGTAATGTTAAAAAAACTTCAAGTATACATCTGTCGACCGTAGATAGAGCAAAATGAAGGGGACATCGACAGATGATGAAAAAGTTGAAATCACTGGGCTTGAAAGAGTTCACAGAAAAAAGTATTATGTAGATATGGGGACAAAAGTAGTGATAGACAGAATGCATGTGGAAACTAGTTGATAGTACAGAGATTTTAAAGGGTAGT # Right flank : AGTTACTAAGTTTGTGTACATAACCATGTGTATGTTAATACATCGATTACTAATATATGTAGTCATGATTGTGTACAAATATGACCAACAAGTAATTTATATGCCTAGTTATATCCACATTCTGTATACGCAGATATGTACATTACTAAATCATATACTCATCAATGTACATACAATTGCTTAACTACCTTGTATTTTTGATACAAAGGGTGTATGTACTAATTTAATTTTTTAGTATCTACAAAACTTGAGGGTATCAAGTTAGAACTTTTTTATTAATCGAAGCAAATACAAAATAGCAAATTTTATTTGGCTATAATAGTGGAACAAAAAGAGGAGGAGGTTAACTGTTATCAAAAATATAGAACATTGTAGAAATTAATAGAGTTGTAATCAATCGGAAAGTAAAAATGTAGGATTGATGTATTTCAGAACTTATGTTTTGAATTTAGCTTAAGAAAGCGCTATCATCTATATGATAGGAGGTGAGCTTAATGCTA # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 142574-140941 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADBIF010000001.1 Ligilactobacillus agilis strain YZ054 NODE_1_length_517698_cov_51.5712, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 142573 30 100.0 37 .............................. TGCAACTGGGTCGTATGTTTCTAAAGCTGGTAAGGTC 142506 30 100.0 34 .............................. CCTTAGATGGAACAGAAGTTGAGGCAGGGCTCTT 142442 30 100.0 35 .............................. GTTCATAAAATCACATCCTAATCACGATATTTCTT 142377 30 100.0 37 .............................. CCGTAATGCAGAGAGTATGATGGCACTACAAAGTACG 142310 30 100.0 35 .............................. ACTTTGAAAGCCGCCTAGACAACTTTAAGACGACT 142245 30 100.0 36 .............................. TGTCGGAGCAAGTCAAGCTTCGCAAACAACATTTAC 142179 30 100.0 35 .............................. AGCAACTTAAAACTCATATACCCCCTTTTATTTTT 142114 30 100.0 37 .............................. TTCTTTAGTGGTAAATTGAGATTTCCACATTTCATTA 142047 30 100.0 34 .............................. TCCAGGGAATAACCAATCATTTTCATCATTATAA 141983 30 100.0 36 .............................. AAATTGCCCTTGCCGCCTTGACCAGGTGAGCATTAC 141917 30 100.0 37 .............................. TGAGAAACGAGTTTTAAGGTTGCGTTCAGATATGAAT 141850 30 100.0 39 .............................. CGCAATCCGTCACACTTAGATATATTGGAATCGAACAAG 141781 30 100.0 37 .............................. CAGCAGACGTTAAAGTCATCGACTCTAGCTTAGTTTT 141714 30 100.0 37 .............................. CAAATCCGGAGTAATTGAAAGTGACAATATTATTTCC 141647 30 100.0 37 .............................. ACCTTGTAACGCAAGCGAACGACCTAGCTAAAAGTTT 141580 30 100.0 38 .............................. GGTGAGAAGTCTGTTCTCAAGCAGTTTACATTTGCTAA 141512 30 100.0 40 .............................. GGTATGCTAAACCCTAGTCTAGGTAGCGACTGGACTTAAA 141442 30 100.0 37 .............................. CATCAGACCGTTATCACGCGACACAGGGTCTGTGGAT 141375 30 100.0 36 .............................. GTAAATGTTCTTTGTAATAGCAAGGGGTGGTTATGA 141309 30 100.0 37 .............................. CGGGTACGATGCGATGACTAACAGGCTAAGAAAAGGA 141242 30 100.0 37 .............................. TCAATTGACCGATAAGGTTTGCTAAAAAGCTGATTAC 141175 30 100.0 39 .............................. GGGCAAACGGGACAGACTCCCACCCAGGTGGTTTAGCGA 141106 30 100.0 36 .............................. TCTTACACATTGAAAAGCCAGATGAAGTAAGTTTGA 141040 30 100.0 40 .............................. CAGTCAGTGAACTCCACAGATTTTTAAATGCGTCTACGAT 140970 30 96.7 0 .........T.................... | ========== ====== ====== ====== ============================== ======================================== ================== 25 30 99.9 37 ATTTACATTCCTCTTAAGTTAAATAGAATC # Left flank : AATTAACAAAATGCTTGTTCAAAGCGATTACTCGCTAAGCGGCCAGTTTTACCAAAGCCTTGTCTGCTTCTAAACCTGCATTCGATAGCACACCCATTGCACTCGCCGTTTCCGCTAGACTGAATTTTGCCTGGTGGGCTGTTGATGATACATAGGACATCCCAACCCCTAAGGACTGAAACGAAGTTGATGTTACATTAGCCGAGTATGCTAGGGTATTAACTGCTTTTTTAGTCTGAACGGTCATTTCTTTAGTTGATGATAACTGCTTACCGTTCTTATCAACAGTCATCCCAAAGTCTTCCAGAGTTTGGAAGGCTACTTCAACTACATCTTTAAAGTCATCACCTGACGCAATCGAACCTTGTAGCTCTGTATTCATTGCTCCAAGGGCTTGTTTGCCAGAGTAAGCACGCTTAACTAGTTCCAAGTAAGCATCGGCAATTTCTTTTTGTGACTTCCCGTACCGAAGCGAATACTTTTCACCGTCAGCTTGCATC # Right flank : ACTACACCTTAAAAGCCTTGTATTATCAATAACTTAATCCATATATTCTGTCTATCACCTTATTTACACCTACAGTCATATATTACCTTCTCCTTCATTTTCTTTCAACCCTTGATATTTCGGGCTTTTAATCATCTGTCGATGTTACCCCTAATTTGCTTTATCTATGGTCGACAGATAAATAATTAGAAAAAGTTTGAAGTTTCATCAGACATATCCATTCCTAAAAACTGTTTATCTAGCCATTTCTTATTACGATTTTTAAAAATAATTACAGAGTCTTTATCATCTCTAATCCATTTCCTTAATTCAATCGTTAATTTCTTTAACTGTGATTTAGTAAGCTCCCCTTCAAACACAGATTTTTGAACATGACTAAGGTATTTTTTACAAATGACAGATTGTAAAATATAAGTTGAACATTTAAGTGGACAAGAAAACCCATAAAGGTCTTTAATGGTGTTACCACAACATTCCATTAGAAAGAAGGACCTTTATGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCTCTTAAGTTAAATAGAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //