Array 1 105482-106351 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDUU01000015.1 Chromobacterium violaceum strain LK17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 105482 28 96.4 32 ........T................... GCATCCGCTGGCTGAAAAAAGAAGAGGCCAAC 105542 28 96.4 32 ........T................... AGGAAAAATGGCGTGATGGCATATGACGATTG 105602 28 96.4 32 ........T................... AAAGCCTACGTCCGGCTTTATGAGCGAGAGGA 105662 28 96.4 32 ........T................... TGATGCCGGCAGACAGCCACCCGATCGGGCTC 105722 28 100.0 33 ............................ AGCAATTCCGACCGCGGCCAGGTAATGCTGGTT 105783 28 100.0 32 ............................ ACAGATAAAGCAGGCTTTTTTCAGCCGCTATC 105843 28 100.0 32 ............................ ACCAAGTCCTTCCGCGCTGATAGATCGACATA 105903 28 100.0 33 ............................ CATGCCGCTGTCGGCGATATCGATGGCCTCGAT 105964 28 100.0 32 ............................ GATTAGCTGCAGCACGCGCCGCTCAATGCGGC 106024 28 100.0 32 ............................ CGCATCATGCGCCGGCTCATGTCGCCGTACAG 106084 28 100.0 32 ............................ ATTTGCTTCAGCGCCTCGCGCGACTCCTCGCC 106144 28 100.0 32 ............................ AACTCGGATGCCCGCCATGAACCGGTCAGCCT 106204 28 100.0 32 ............................ ATTGCATGGCCTGCATCACCACTGCCATGCAG 106264 28 100.0 32 ............................ AGCAGCCTGGAAGACCTCTACTACGTCACCGA 106324 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 15 28 99.0 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : CCGTTGGCTCAGTGGCTTCGCCGACCACGCTATCGTCGGCGACATCCGCCCCGTCCCCGCCGGCGCAAGCGCGGTCAGCGTGCGCCGCCGCCAGGCCAAGAGCAGCCCCGCGCGCGCGCGCGACAGGCTGATGCGCCGCCAGGGCATCAGCGCGGAAGAAGCGCGCTGGCGGATACCGGACGAAACGGCGCAGCGGCTGAACCTGCCCTACCTCACCGTAGACAGCGCCAGCACCGGCCAATGCTTCCGGCTGTTCGTCGAGCAACAGGCCGCGCCAAGCATCGCCGCGGGCAGCTTCAATGCCTACGGCCTCAGCGCCGCCGCCGCCCTGCCGGCTTGGTAGCCCGAAAGGGTCGCGGCCAGGACCGCGACCCTTTTCTCTCCCGCCAACCTCCACCTTTTAAAATCAGATACTTAACATCATGCCAGCAAAAAGGGTTTTGCCGGCAGAAATGGCTGACAGCCTTGCCGAACAAGGCTGATGGGCAATAAGATCTCTA # Right flank : AGTAGTACGCACGTCCGTCATTCCGGAGCATTACGCGCTGCGCCTGGACACCTGGATCACCATGCACGAGGACCTGCGGCACAATCCCGCCTGCAAGGCGGTGTTCAGCGCGCTGGTGGAAGGCATGCGGCGGCATGCCGGGGATGTGTCCTCCGGCGGCTGTCCGCCATGAAAAAAGCCGTCCCGGCATTGACCCGGAACGGCTTCTTCGCAGCCGGCCGCCCTTACTTGGGCGCTTTCGCCTGCGGCAGCCGCTGCAACAACGCGAAGGTCATGTTCTGCTCGCGCGGGCGGTTGCCGGTCCACAGCACCTGCCAGCCTGGCTCGGCCACGCCCTCCTCGCTGCTGCGCACCACCAGCCAGTAATCGCACGGCGGCGTCTCCCCGGATGGGAAGGACAGCAGGTCGATGCCGGCGTAGTAGCGCCAGCTGATCATGGCCAGGCTGTTGCGGTTTTCCGTCGCGATGCAGGTAGCCGTGGCAGGCAGCTTGCGCAGCAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGTCGGATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 289726-290364 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDUU01000006.1 Chromobacterium violaceum strain LK17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 289726 29 96.6 32 ............T................ GCGACGCATGAGCCCGCAGGCTGACTGGAAAG 289787 29 96.6 32 ............T................ ACCGACCCGATGGACTTGATCATCTACTCGCC 289848 29 96.6 32 ............T................ CGCGGGCCAAATTATACGCCCTGCTCGCCGCC 289909 29 100.0 32 ............................. CCGTGCGTGACTATAAGGAAGGGGAAAGTGCA 289970 29 96.6 32 ............................A GTCGGCGTGTATCTGGCGGCCGATGTAAAGAC 290031 29 96.6 32 .........................G... GCCGAGATCAAGCACTTCAATGCCAGGAAGGA 290092 29 100.0 32 ............................. CGGTTATGCGCCACTCGGCCTGATTCTGCGCA 290153 29 100.0 32 ............................. GACTGCTGGGTTTGCGTCCTGGTCTTGGTACG 290214 29 100.0 32 ............................. GATCGTCTATCCGCATGTTTCGGGCCGTAAAA 290275 29 93.1 32 .........................G..A AAGCCAGTGCCTCAAGGCTTGAGGGTTCGAGA 290336 29 69.0 0 A.A.........GTT..........TTGA | ========== ====== ====== ====== ============================= ================================ ================== 11 29 95.0 32 GTGTTCCCCACGCACGTGGGGATGAACCG # Left flank : TGCCCACGCCGGGCGGGCCCCACAATATCATCGAGTGCGGCTTGCCGGATGCCACCGCCAGGCTCAGCGGCTTGCCCGGGCCGATCAGGTGCTGCTGGCCGATCACCTGATCGAGCGCCTGAGGACGCAAGGCCTCGGCCAGCGGTTTTTGCGGTTCGACGGAAAAAAGATCGGACATGGCGCGATTTCGGCGGGATGGGGCGGAGAAACAGTATACCAGTTGGGGACAGGCATGAAAAAAGCGCCGGCCAGGCGCTTTTTGCTTGCATGTCGATGGAATGAAGGTACGCTATGGCTGCTGGGCTAGCCTAAGCCTTGCTGTTGAGGAAGCTTGGCGTTCAGCATCAGGGGCGAGCGGTGTCGGACCCTTGTGCAAGGGACGATTTGCCAAGGCCTGGCGGGGTTTGCCGTGCTGATTTGAACGCCGCTTCATGACTGGGAAAATCGGTAGAATTTTAGATCGGGTTTTTGTCTTTAAAAATCAGTAGCTTGAAAATGGT # Right flank : ACGGGGGACGGCTGGAGTGGTGTCGCGGCGCTGCCAGTCCGGCCGCGCCTGGAAACAAAAAAGCGCCCCGTGGGGCGCTTTTTTTCTGCACAACGAGTAAGAAGGCTTAGGCGCGCTTCTTGAATTCGTTGGTGCGGGTGTCGATTTCGATCTTTTCGCCGGTGTTGACGAAGGCCGGAACCTGAACTTCGAAGGTGGTGCCTACCAGGCGGGCCGGCTTCAGCACTTTGCCCGAGGTGTCGCCGCGCACGGCCGGCTCGGTGTACTCCACTTCGCGGATCACGGTGGTCGGCAGTTCCACGGAGATGGCCTTGCCGTCGTAGAAGGTTACCTGGCACACGTCTTCCATGCCGTCGACGATGTAGTTGATGGTGTCGCCCAGGTTGTCGGCTTCCACTTCGTACTGGTTGAATTCGGTGTCCATGAACACGTACATCGGGTCGGCGAAGTAGGAGTAGGTGCAGTCCTTGCGGTCCAGCACCACCACGTCGAACTTGTCG # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCACGTGGGGATGAACCG # Alternate repeat : GTGTTCCCCACGTACGTGGGGATGA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.50,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //