Array 1 25558-23926 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBMD01000017.1 Neisseria meningitidis strain P4534 00001.P4534_scaffold24.1.noN.26271, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 25557 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 25491 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 25425 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 25359 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 25293 36 100.0 30 .................................... CGTAACCGGCAAGGCTTATTTGTCCAACGA 25227 36 100.0 42 .................................... GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA 25149 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 25083 36 100.0 30 .................................... ATTTATATTATTTTTGATTTTGATTTTTTT 25017 36 100.0 30 .................................... GAGCATCTATTAGGGGTGAAGGTAGATCTT 24951 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 24885 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 24819 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 24753 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 24687 36 100.0 30 .................................... ATGGGGTATGCAATTACATCGCTTGGGTTT 24621 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 24555 36 100.0 30 .................................... GCTCAGTTGGAACAATGAATACATCTTGAA 24489 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 24423 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 24357 36 100.0 30 .................................... CTTTTGCCGCCATCGACGCAGCCGACAGGG 24291 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA 24225 36 100.0 30 .................................... TTCGTACCCAAAAAATCGACCGCGTAACGG 24159 36 100.0 30 .................................... ATAAATTTGTGTCTGCGTTATTCATTTTAG 24093 36 100.0 30 .................................... ATAAAAAATCGAAAAAATCAAAAATACTAG 24027 36 100.0 30 .................................... TGGATAGGCGTTCCGCAGCATCAGCAAGCC 23961 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 25 36 99.9 31 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTCGCAAGGAGCTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGCATTTAGGGGGTTTTCGGGAATTTGGCAGAGTTGTGGGTTTCCAAGGTGGTATTTTAGTGGGGAGGGAAGATGGTGTGGTTATTTAAGTTTTATAAGATAAATATATATTGCTGTAGCCTGTGTGATTAGCTTCACGAGGAGAGGGTAAATTGCTTTAATTCCTTATGCGTGGGAAAAAGTTTGGGGGGTACGGTTAAGAGAAACACAAGTGAGGTTTAGCGGTGGCTCTGCTGTTAAGTGAATGGAGGAGGTACCCGGGCCACAAGCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //