Array 1 318291-319045 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKW01000012.1 Actinomyces oris strain G53E G53E_contig012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 318291 36 100.0 34 .................................... TGGGAGCGGTAGCGTCCGACCTTGCGGTGGGGGT 318361 36 97.2 36 ...........C........................ AGCAAGCAAACCGAGACTGACGGAACGGACGTGAGA 318433 36 100.0 35 .................................... GTCGCCGGAGCGCTGCTGGAGCGACCCGAGTCGTC 318504 36 100.0 37 .................................... CCGTCGTCAACCATCCAGTCCGACACGCACCAGCCAC 318577 36 100.0 34 .................................... TCGGTGAACCAGGCTGTCGCGTCCGGCATCCTGG 318647 36 100.0 37 .................................... GAGTACCAGGCCTGCGAAGCACCCGGCTGGGACACCT 318720 36 100.0 39 .................................... CCGGGTACTCCGATGACTGGAAGCAAGCGACGCCATCGT 318795 36 100.0 36 .................................... TCCAGGGCATCGAGGGGCATGTCGGCGTCGGTGCGG 318867 36 97.2 35 ..................G................. AGACTGTCGTCGTCCGACCCGAAGCCGAGTACGTT 318938 36 100.0 36 .................................... CTGATCGGAGAGGCTGATGTGATAGCTACCGGCCAC 319010 36 86.1 0 ...A.....T...................C..G..T | ========== ====== ====== ====== ==================================== ======================================= ================== 11 36 98.2 36 GTCGCAGTTCCTTCGGGAACTGCACTTCATTGAGGC # Left flank : TACAAGGGAGTGACGGTGCGCTGATGCGTGATGATGTCAGACGCGTTCTCGTGGCCTACGACGTCCCGTCCGACCGGCGCCGAACGCGGGTGCGAAGACTCTGTTGAAGTACGGGGACCGCATCCAGTACTCCGTGTTCGTCGTAGATGCGGTGCCGGCCAAGCTCCTGCGGATGCGGGGAGAGCTGGAAGGAGTTATCAAGACGGACGAGGACTCAGTGCTCCTGTGCGACGTTGGTCTGCTGCCCTCAGTTGATGAACAGCGATTCTCCTATGCCGGCCTGACCAGGACGATCACGCCAGAGGGGCCGCTTATCGCTTGATGCGAGCGCTGCGGTGCTCGAGGATCCCCGGGCAGTGCTCGCAGCGGTAGAACGTTGAAATAGCGGGGATTCTGTGAGGTGGGGTGAGGGGGTCGGGGTGGCTGGGTGGAAGTCCGAGTGCGGAGCGCTCGCGAAGCCTCCTCAGATGGGCGTGGTGGCGGGCTATACTGAGCGGGCC # Right flank : TAGGCGGGGATTGATGCACATATTGTGGTCGACAATCCCCGCCTACTGCTCTTTGTGCGTCACCTTCCAGGCGCGCCTGGCTCCTTCCAGGGCGGCGGGCAGGGCGGTGAGCAGGCGCTCGACGTCGTCGGGGCCCGTCTCCCGGCCCAGGGAGCAGCGCAGCGTGGAGCGGGCCGGCCCCTCCTGAAAGCCCATTGCCAGGAGCACGTGACTGGGCTGGGTGACCCCGGCGTGGCAGGCCGACCCCGCCGACGCATCAACCCCCGCCAGGTCCAGGGCCATGAGCAGTGCCTCGGCGTCGGCCTCCTCGAACCACAGGTGCGCGGTCGAGGCCACATGATCGGCATCCTCCGGCAACGTGGCGTGAACGCCCGCAAGCCCTCCGGCCCCCTCCAGGATCCGACGTCGCAGCGCCGCCAGCCGGGCCTCCTGCTCCTCCCGCTCGGCGACCGCCAGCTCCACCGCCAGGGCCAGCGCCCGGGCCGCCACCACGTCCTGAG # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGTTCCTTCGGGAACTGCACTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 158367-157755 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKW01000009.1 Actinomyces oris strain G53E G53E_contig009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 158366 36 100.0 28 .................................... CCATGGGGGAGCGGGCACCTCGACCCTG 158302 36 100.0 28 .................................... TTGGTGGTTTGTGGGTGGTGTTGGGTTG 158238 36 100.0 28 .................................... GCTGCGCTGACACCGGGGTGGCAGCCTC 158174 36 100.0 28 .................................... TCGTCCCCACCTCACGGGGCGACGGTCC 158110 36 100.0 28 .................................... TGCTGGCTTGGCTGGCATTGCTGGCTTG 158046 36 94.4 28 ................G.C................. GCGGCGCGGCGAGCCTCAACTCGGGGGC 157982 36 100.0 28 .................................... TCGTCGCCGGTGTAGTAGCTGTTGTTGA 157918 36 100.0 28 .................................... TTGTTGGCGTAGCGGGCCTCCGGGGCGG 157854 36 97.2 28 ..............A..................... GTGAGCCACACGTGGTCGGTCGCGTCCC 157790 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 10 36 99.2 28 GAAGTCTATCAAGGGGTCTGGTGACTGAATCCCAGC # Left flank : CGTTCCGTGACGACGGCGCTACGCTCCCAACCGTCTTGGAGGAGCTGGCTCAGCACTTGGGTCAGTACTGTGAAGGGGACCGAGCCCGCTTGGATGTCCCCTCGTGGACCGGTCCGAGGCGTGAGCCCTGATGGCGGATGATCCAGTGTGGTGCGTGGTCATGTTCGATCTGCCGGTGGCGACGAAGAAGCAGCGCAAGGAGGCGACTCGTTTCCGGCACCTTCTCCTGGATGAGGGTTTCTGGATGCTCCAGTACAGCGTCTACGTCCGTTACTCCCCGACCGTCGCCGGCGAGCCTCGCAGGGTGGGCTCGATCAAGCGTAACCTGCCACGCGGCGGTGAGGTGAGGATGCTGTACGTCACCGACCGCGAGTGGTCGCGCACGCTCTGTTTCCGCAACGAAGAGCCCGTTGAGGCTGAGTCAGAGCCCCAACAGCTCATGATCTTCTGACCTCTGACGAGGTGTTTACGCTGGTCAGACCCCCTTGCCAGACGTTTCC # Right flank : ACCGAGGTGACATGTGCGCAGGGTGGTGGGGACTCCGGCGTCGTCAGGCAAAGCCGGAGCCAAGCCAGTGCCGAGCCAACGCCGCGGCGCGCCTCGGTCTGGCAAGCATGCGCTCCTGGATGGCTCCGGAAGGGACGGTGGGGGTGGGGCAGGACATTCAGGCCGCGGGCGAGTCCATCGCGGCCCCGCCGCCGCCCTCACTGCATGAGCCACTCCCTCATCGAGGACTTACTTTTGGCACCAGGACTGCGCTCTCCCCCAGATGACTGCGGGGAGATCCCAGTAGCCTGGAGGACAACGCAGTCCTCGATCGGAAAGTACGTCCTCGGAGCAAACCGCAGCCGCCACTCCGGCCCAGTCCGGCCCGCGGGCCCGCCCTCGGCTCAGCCGGCTTGCGGCAGGAGGATGGAGGCGCCCAGGGCGAAGGGGTAGCCGGGTTTGAGAATGCACTGGACGACCGGCTGCGCCATCTCCAGGACGCTGTCGGCGTCGAGCCCCTC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGTCTATCAAGGGGTCTGGTGACTGAATCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 68711-68379 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKW01000014.1 Actinomyces oris strain G53E G53E_contig014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 68710 37 100.0 36 ..................................... TGTCGAACAAACATGGGCTCTCCTAATAGGGATGTA 68637 37 100.0 37 ..................................... GTGGTTGTGAGATTGTAGCCTGATGTCTCAAGATAGT 68563 37 97.3 36 .........C........................... TGATATTCTCTCTTCCTCGGAGGTGCAAACCCTCTG 68490 37 94.6 37 .........C........T.................. CCTCACCATCGACGCTACGCCTGATAGAGTGCACCTC 68416 37 81.1 0 .........................CGC....T.CGG | T [68384] ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 94.6 37 GTCAGAAAGTACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : CCAGCACCAGAAGGTGCATTAAGACAGCTTCCGCTTCCGTCTGCAACATCCGCCTGGACGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACGGAGAGGGTGTGGCTGATGTATCTGAATATGGTCGCGTCAGAAAGCACCCAGCATCAGAAAGCCTATTGACGGAACTTACAGTCCATCTTCATCTCCTTAACGAGCTGGACGGCCGGGCAGCTCGGCGTAGGAAACGCTCCTGACGCCGAGTCCAGGGACCGGTTTCACCTCCACCAAACCAGAATGTGCCCGCAGTCACAGGCGGGAACCTCGACCTTTTGGCTTGACGTCGTCGGAAGTTGGTGGCTGAAGGTGCTCCAGGTGCCGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAGGTGGTTAAATAGGGGCGCTGCCGTCCGGCCCCGCGGGATGTCTGCGGAGCCGGTGGCGCTCCAGCCCCTGGAAGTGGAGCAACGACGCCACTCCCAGAAGCAGGG # Right flank : GGCTTGCCGTGCGGTGGCTGCCAACAGCGCCGGAAAACGGCCAGTCCGACCACCAGTCCCTTGAACAGCCCCTCCGAGTCGCCCCGAACCACCCCGCCACCCTGGGCGCCGTCCTCCTCGACGACACCTCCACCCCAGGTGGATTCGTGCCAGGTGAGCTCGCGCGATTCCAGGAAACCTCACGCAGCCGAAACGCCTCTACCGCAGGAGCCGGGCAAGCAGACGCAGACAACAAAACGAGCGGCACCGAGAAACTCGGCATACGCCCACTCGCCGCTCATTCCTCGCCCGCCCACGAGCGGGCAGACAGTCAGGCGACCAGGCGGCCCGGCCGACAACAGCCCAGCCAAGCCGCCCCCGCTTCAGGCGCGGCGCAGGCGCAGGACGATGAGGCCGGCGGACAGCAGGATCGCGGCCACGGACAGTACGCCGATCGCCACACCTGTCACCGGCAGCCACCGCTCCCGAACGCTCTGGGCCGAAGGCCGCTCAGCGGCGCT # Questionable array : NO Score: 2.71 # Score Detail : 1:0, 2:0, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGTACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 70096-69042 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKW01000014.1 Actinomyces oris strain G53E G53E_contig014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 70095 37 100.0 36 ..................................... GATCGTCGAAGACAGCGGTGAAAGTCGCGTTGGCGG 70022 37 100.0 34 ..................................... ACATGTCATAGGGCTTGTCCACAAGATCCTCAAA 69951 37 97.3 35 .....................A............... TTCAGCGGGTCCTGATCTTCGTCAGGGGTGGAGAT 69879 37 97.3 36 .........T........................... GCTCCTAGCCTGTTTGTAAGTCCAGACGTTATGGAG 69806 37 97.3 36 .......................C............. AGTATCACAAAACTCATCAACATCCTTCGACTTCTT 69733 37 97.3 34 .....................C............... GCATAAGGACGACGTAGGCAGCAATCGCGCCAGA 69662 37 94.6 36 .C......T............................ TGATGCTGTCACCTTCACAGTGACCGTCCTCAAGGG 69589 37 100.0 35 ..................................... GTTTCGGTATGGGTATTCCCCTGCGCCACAGACGT 69517 37 100.0 35 ..................................... AGGAACCACATCTTTTTCACCTCCTTTCATATGGG 69445 37 97.3 38 .....................C............... GTGCACTGTGACGCTCCTGCCACAGTGTCGGGATTCTC 69370 37 97.3 37 .....................C............... GTCAATGAAATACAGAGGGGCTTACTTCTTCAGCTCA 69296 37 94.6 37 .G...................C............... GTCAATATCGACACGCCACCAGCCATAAGCCTCGAAG 69222 37 100.0 34 ..................................... AGCTTCCGCTTCCGTCTGCAACATCCGCCTGGAC 69151 37 100.0 36 ..................................... GGAGAGGGTGTGGCTGATGTATCTGAATATGGTCGC 69078 37 75.7 0 ..................T.....A.CCT...G.CGG | ========== ====== ====== ====== ===================================== ====================================== ================== 15 37 96.6 36 GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : AGCACCACAAGGTGCATTAAGACATCCCCAGGAGAGCCGCGTGTCCCCACGGCACCCCATAGTCAGAAAGCACCCAGCACCAGACGGTGCATTAAGACACTTTCCCGTGGATGCTGTCACCGGCGGGCCCAGTCAGAAAGCACCCCGCGTTAGAAGGCCTATTGACGGAACTTACAGTCCATCTTCATCTCCTTAACGAGCTGGGCAGCCAGGCGGCTCGGCGGGGGAAAGGCTCCTGACACCGAGTCCAGGGCACGGTTCCACCTCCACAACACCAGGATGTGCCCGCAGTCACAGGCAGGAACGTCGACCTTTTGGCTTGACGTCGTTGGAAGCTGGTGGCTGAAGATGCTCCAGGTGCCGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAGGTGGTTAAATAGGGGCGGTACTGGCCGGTCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCCCCTGGAAATGGCGCAACGACGCCACTCCCAGAGGCAGGGG # Right flank : AACTTACAGTCCATCTTCATCTCCTTAACGAGCTGGACGGCCGGGCAGCTCGGCGTAGGAAACGCTCCTGACGCCGAGTCCAGGGACCGGTTTCACCTCCACCAAACCAGAATGTGCCCGCAGTCACAGGCGGGAACCTCGACCTTTTGGCTTGACGTCGTCGGAAGTTGGTGGCTGAAGGTGCTCCAGGTGCCGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAGGTGGTTAAATAGGGGCGCTGCCGTCCGGCCCCGCGGGATGTCTGCGGAGCCGGTGGCGCTCCAGCCCCTGGAAGTGGAGCAACGACGCCACTCCCAGAAGCAGGGGTCAGAAAGTACCCAGCACCAGAAGGTGCATTAAGACTGTCGAACAAACATGGGCTCTCCTAATAGGGATGTAGTCAGAAAGTACCCAGCACCAGAAGGTGCATTAAGACGTGGTTGTGAGATTGTAGCCTGATGTCTCAAGATAGTGTCAGAAAGCACCCAGCACCAG # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : GTCAGAAAGCACCCAGCACCACAAGGTGCATTAAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 3 71119-70428 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKW01000014.1 Actinomyces oris strain G53E G53E_contig014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 71118 37 100.0 35 ..................................... CGAACCTTCTCAGTGTAGTCCTTGTGAACAAGAGG 71046 37 100.0 36 ..................................... GAGTTGCCTTCATACCAGCGAGCGACACCGTCGCGA 70973 37 100.0 36 ..................................... GCATGCAGCAAACATGATGATGCCAGCGATGACCAG 70900 37 100.0 36 ..................................... GTTTCCAGGGCGCCGGCGGTGTTGGCTTCGGTCCAT 70827 37 97.3 36 ........................A............ CTCAACGCGAGGTTGATGACGGAGCGGGGTTTCCGC 70754 37 97.3 36 .....................T............... ATCCACTCCAGGGTCCAGAACGCGTTGACCATTCCG 70681 37 100.0 35 ..................................... TTCATGATGATCCCCTTCCGAGATCCAGAGGCCAA 70609 37 97.3 38 .....................C............... ATCCCCAGGAGAGCCGCGTGTCCCCACGGCACCCCATA 70534 37 97.3 33 .......................C............. ACTTTCCCGTGGATGCTGTCACCGGCGGGCCCA 70464 37 70.3 0 ..............C..GTT......CCT...G.CGG | ========== ====== ====== ====== ===================================== ====================================== ================== 10 37 95.9 36 GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : CCCAGCACCATAAGGTGCATTATGACTCGACGTCTCGAATGAGCACGCAGACCGCGTTCCGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACCGAGACCAGTAGTCCCAGCACCGACGCTACCGTGCATCAGATAGCATCCAGCACCAGAAAGCCTATTGACGGAACTTACAGTCCATCTTCATCTCCTTAACGAGCTGGACGGACAGGCGGCTCGGCGTGGGAAACGCTCCTGACGTCGAGTCCAGAGCCCGGCTCCATCTCCACCGCAGTAGGTTGTGGCCGCAGTCACAGGTCGGAACGTCGACCTTTTGGCTTGACGTCGTTGGAAGTTGGTGGCTGGAGGCGCCCGAGGGGGCGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAGGTGGTTAAATAGGGGCAGTGCTGGCCGATCCCGCGAGGTGCTTGCGGAGCCGGTGGCGCTCCAGCCCCTGGAAACGGCGCAACGACGCCACTCCGAGAGGCAGGG # Right flank : AACTTACAGTCCATCTTCATCTCCTTAACGAGCTGGGCAGCCAGGCGGCTCGGCGGGGGAAAGGCTCCTGACACCGAGTCCAGGGCACGGTTCCACCTCCACAACACCAGGATGTGCCCGCAGTCACAGGCAGGAACGTCGACCTTTTGGCTTGACGTCGTTGGAAGCTGGTGGCTGAAGATGCTCCAGGTGCCGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAGGTGGTTAAATAGGGGCGGTACTGGCCGGTCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCCCCTGGAAATGGCGCAACGACGCCACTCCCAGAGGCAGGGGGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACGATCGTCGAAGACAGCGGTGAAAGTCGCGTTGGCGGGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACACATGTCATAGGGCTTGTCCACAAGATCCTCAAAGTCAGAAAGCACCCAGCACCAAAA # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 4 72516-71450 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKW01000014.1 Actinomyces oris strain G53E G53E_contig014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 72515 37 100.0 35 ..................................... ACTCCTCGCGCGAGGAGCGACGATTGAACCAGCCT 72443 37 100.0 36 ..................................... TTCTACCTCATCCATGAAGTATGCGCCCTTGCTCTC 72370 37 97.3 38 ................G.................... GTTGGTCCTTTCTCACACCAATCGCGCGGTGATCTGGT 72295 37 97.3 37 ..........G.......................... TTGTGCACAGCCTAGCCACCAGGCCACAGGTCTGGTA 72221 37 100.0 38 ..................................... TCTGATGCGTCGCTTCTTGTGCTTTTTTCACGAAGCAT 72146 37 100.0 37 ..................................... GACAGGACAAGCCCGACAAACAGGATGGTAGATCCTG 72072 37 100.0 36 ..................................... AACCATCACTGGCACAGGCCCTGCAAGCCATGAGGT 71999 37 100.0 37 ..................................... TTTGCCAGCTCCTCCAGCAGCCATACACCGCCGGCGC 71925 37 94.6 37 .........T......T.................... TCAACGGCGGACACTGATGCCATCATGTGGAAACCCA 71851 37 97.3 38 .................G................... CCGAAGAGGAGACGTTCGACGCCCTGGCTGACCAGATC 71776 37 94.6 35 ..................T..T............... TCGTCGCACTCGGTGACGGGCTCGGCTCCGGTGTT 71704 37 100.0 38 ..................................... TTCCAATCCTCGCGCGTCCTCTTTGCTGGCGGTATGGC 71629 37 94.6 34 .....................T...........T... TCGACGTCTCGAATGAGCACGCAGACCGCGTTCC 71558 37 100.0 35 ..................................... CGAGACCAGTAGTCCCAGCACCGACGCTACCGTGC 71486 37 70.3 0 A.....T....T............A.CCT...G.CGG | ========== ====== ====== ====== ===================================== ====================================== ================== 15 37 96.4 37 GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : ATCGCCTTGGCGGTTCTGACCTTCATCGGCCTGCCGCTGAGCGTGTTCCTAGAGATCTGGTCCAACTGGGAGGCCGCCAAGGGTATCGCGGTCCGCCACCAGCGCATCGGCGGTTGGGACGCGGGATGGGGCTGGATTCTTGGCTTCGGCCTTTTCGGGTCACTCCTCATCGGCGGTGGGATCTGGCTGCTCGTTGACAAAGTGGGCGGTCGGTTGGCTCGGCGTGGGAAACGCTCCTGACGTCGAGTCCAGAGCCCGGATCCATCTCCACCGCAGTAGGTTGTGGCCGCAGTCACAGGCGGGAACGTCGACCTTTTGGCTTGACGTCGTCGGAAGTTGGTGGCTGGAGGCGCCCGAGGGGGCGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAAGTGGTTAAATAGGGGCAGTGCTGGCCGATCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCCCCTGGAAGTGGCGCAACGACGCCACTCCCAGAGGCAGGG # Right flank : AACTTACAGTCCATCTTCATCTCCTTAACGAGCTGGACGGACAGGCGGCTCGGCGTGGGAAACGCTCCTGACGTCGAGTCCAGAGCCCGGCTCCATCTCCACCGCAGTAGGTTGTGGCCGCAGTCACAGGTCGGAACGTCGACCTTTTGGCTTGACGTCGTTGGAAGTTGGTGGCTGGAGGCGCCCGAGGGGGCGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAGGTGGTTAAATAGGGGCAGTGCTGGCCGATCCCGCGAGGTGCTTGCGGAGCCGGTGGCGCTCCAGCCCCTGGAAACGGCGCAACGACGCCACTCCGAGAGGCAGGGGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACCGAACCTTCTCAGTGTAGTCCTTGTGAACAAGAGGGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACGAGTTGCCTTCATACCAGCGAGCGACACCGTCGCGAGTCAGAAAGCACCCAGCACCAGAA # Questionable array : NO Score: 3.00 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 5 88326-87855 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKW01000014.1 Actinomyces oris strain G53E G53E_contig014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 88325 37 97.3 33 .....................C............... GTGGTGTACGCGCCATTGTACTCGGTCACGCGG 88255 37 94.6 33 A....................C............... GACACGTCCTTGTGTTACATCGATGCCAGGGTT 88185 37 100.0 35 ..................................... CATAAGATTGTATTCTCCAGATGGGCATCACTCTC 88113 37 100.0 37 ..................................... GTGGTGAGGTGCTACCAGGCGACCTTGAGAACGTCGA 88039 37 100.0 38 ..................................... GCCCTACGGCGGGCATCTGACTGATTTCCAGCCATGTG 87964 37 94.6 34 .........A.........................G. CCGACGTTCGTCTTGACGTTCAATCAGATCGTCC AC [87947] 87891 37 81.1 0 AC.....C..G...CA.................C... | ========== ====== ====== ====== ===================================== ====================================== ================== 7 37 95.4 35 GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : CACGCGTCAGAAAGCACCCAGCACCACAAGGTGCATTAAGACGCATCACCGTGACCCTGATGACCCTTAATCCTGACGACAGAAGGCACCTCGTACACCAGCGAGAAGCATCAAGTCCGTCTCCCGTCGGTCGCCTTGCACGCTCCAGCCGAGAGACCCAAAGCCCTGACGGACCAACAGAGAAGGCAGGACGTGTCGATAGTCACAGTCGGGAACGTCAACCTTTTGGCTTGACGTCGTCGGAAGTTGGTGGCTGAAGGTGCCTGAGGGTGTGTCGGTGGCGCTTGGCGTCGGGACGCCGAAAGGTGGTTAAATAGGGGGGCGTGCTGGCCGGTCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCCCCTGGAAGTGGCGCAACGACGCCGCTCCCAGAGGCAGGGGTCAGAAAGCACCCAGNNNNNNNNNNNNNNNNNNNNNNGAAGGTGCATTAAGACCCTGTAGCATCCTTGTTGAATCCAGGAATTTTGTC # Right flank : ATATATATATCGGCGTGCGCCGGCACACCACATGCCGATCTTCTCCCTTGCCCGCCAGCATCTCGATATCCTGTACTCCAGAGCCTCTTCACGTTCCCGCCCTTGAAAGGCCGCAATGATGCGTCCAGCCCAGCCATTACCACCACCATCGTCAACGACACCGCCATCCCCACCCCGCCCGCACCGTCGTCGCCGTCGTTCCGATCGCGCGAAACCGGGCCAGTACCTCGGGGAGGACATTCGCCCGCTCCAGCACGCAGCCGGATTTACGTTGTCCGAGTCGGGCACCGGCACCCTGTTCGAGCGCATTAGCTCCTGCGAGGGCCTGGAGGGAGGCTGGCGCATGGTCCTCGCCAAGGACGCCTCCGACGGCATCCTGCAAAAGAAGACCAAGGAGTTCGCCGAGCATCTCGATGACTTCCTCACCGAGCTCTCCGGGTCCCTGCGATCAGGAACCTACGAGCCCGATCCGCTCTTGAGCTTCGGCATCCCCAAAGGCA # Questionable array : NO Score: 2.88 # Score Detail : 1:0, 2:0, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 6 89187-88709 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKW01000014.1 Actinomyces oris strain G53E G53E_contig014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 89186 37 100.0 37 ..................................... TCCAGAGCACCGCAGATGCCCCAGAGGATGACGTTCA 89112 37 100.0 36 ..................................... CGACAATCTGGCGTCCCTTGATCTCAGACTCCAGGT 89039 37 100.0 36 ..................................... GATGGCAAGAGGGAGCGGGCCCGAAGGATGTATCCC 88966 37 100.0 36 ..................................... CTATTTATGAGCCCCTAGTGGTGATTGCGTCTTGCA 88893 37 100.0 36 ..................................... TTTAAGACGCTGATTGTACTCTATCCGAGCCCACGC 88820 37 97.3 35 .....................C............... GCATCACCGTGACCCTGATGACCCTTAATCCTGAC 88748 37 73.0 0 .A.....G.....TC......CG..AA....C...T. | G,AT [88725,88731] ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 95.8 36 GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : ACTGCTCGACCACGTCTCTAATGAGGCTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACGTAGCCGCCGAAGCCGCCGCCAGCACACGCTCACCGTCAGAAAGCACCCAGCACCGGAAGGTGCATTAAGACCCACAGAACTCCAGCTCGACGGTGAAGTACTTGAAGTCAGAAAACACCCAGCACCATAAGGCACATCAAGACGTTTTCTGCCGACCACTTTGTGCACCCCAACTGAGGAAGATTGAGGTCCCGCCTGTCCGACGACAGAAGTAGAATGTGCCGGAAGCCACATTCATGAACGTCGACCTTTTGGCTTGACGTCGTTGGAAGCTGGTGGCTGGAGGTGCTTGAGGGGATGTCGGTGACGCTTGGCGTCAGGATGCCGAAAGGTGGTTAAACTGGGGTTGTGCTGGCCGGTCCCGCGGGGCGCTTGCGGAGCCGGTGGCGCTCCAGCCCCCGGAAGTGGCGCAACGACGCCGCTCCCAGAGGCAGGG # Right flank : CGTCTCCCGTCGGTCGCCTTGCACGCTCCAGCCGAGAGACCCAAAGCCCTGACGGACCAACAGAGAAGGCAGGACGTGTCGATAGTCACAGTCGGGAACGTCAACCTTTTGGCTTGACGTCGTCGGAAGTTGGTGGCTGAAGGTGCCTGAGGGTGTGTCGGTGGCGCTTGGCGTCGGGACGCCGAAAGGTGGTTAAATAGGGGGGCGTGCTGGCCGGTCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCCCCTGGAAGTGGCGCAACGACGCCGCTCCCAGAGGCAGGGGTCAGAAAGCACCCAGNNNNNNNNNNNNNNNNNNNNNNGAAGGTGCATTAAGACCCTGTAGCATCCTTGTTGAATCCAGGAATTTTGTCGTCAGAAAGCACCCAGCACCACAAGGTGCATTAAGACGTGGTGTACGCGCCATTGTACTCGGTCACGCGGATCAGAAAGCACCCAGCACCACAAGGTGCATTAAGACGACACGTCCT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 7 89876-89480 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKW01000014.1 Actinomyces oris strain G53E G53E_contig014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 89875 35 100.0 39 ................................... TCATACCTCGCATAGGCTGCGAGATGATGATGACAGGGT 89801 35 100.0 35 ................................... GTCGCTCAGGCGGGGGTGAACATTGAGGGCTCGGC 89731 35 100.0 38 ................................... CTGGGGTCGTACTGCTCGACCACGTCTCTAATGAGGCT 89658 35 100.0 37 ................................... GTAGCCGCCGAAGCCGCCGCCAGCACACGCTCACCGT 89586 35 97.1 37 ..................G................ CCACAGAACTCCAGCTCGACGGTGAAGTACTTGAAGT 89514 35 85.7 0 ......A............T....CA...C..... | ========== ====== ====== ====== =================================== ======================================= ================== 6 35 97.1 37 CAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : CCGGGCGCATCGAAGCGGACGAATACGGTGGCGGGCACTCGACGGGGCTCCTTTGCGGCGTGATGTGTGGTGGGTGCGGCAGGGGAGGCCGACGGCGGCGCCGGCTGGTGGCGGGAGGCCGGCGCAAGGCCGTCCACCTCTTTTCTTTCTGACGACACTACCGGAGGGGAGACGCCCTGTACGGGGAGTTCAAGAGGTCGACGTTCTTCAGCATCGAGGGCCAGGAGGAGGCGGAGAGAACGAGGCCCAGCGGCGCGCCGGCCGAGCCACGGAAGCACAATGTGCCGCAGTCACAGTCGGGAACGTCGACCTTTTGGCTTGACGTCGCTGGAAGTTGGTGGCTGAAGATGCTCCAGGTGCCGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAGGTGGTTAAATAGGGGCGGTGCTGGCCGGTCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCCCCTGGAAGTGGCGCAACGACGCCGTTCCCAGAGGCAGGGGT # Right flank : GTTTTCTGCCGACCACTTTGTGCACCCCAACTGAGGAAGATTGAGGTCCCGCCTGTCCGACGACAGAAGTAGAATGTGCCGGAAGCCACATTCATGAACGTCGACCTTTTGGCTTGACGTCGTTGGAAGCTGGTGGCTGGAGGTGCTTGAGGGGATGTCGGTGACGCTTGGCGTCAGGATGCCGAAAGGTGGTTAAACTGGGGTTGTGCTGGCCGGTCCCGCGGGGCGCTTGCGGAGCCGGTGGCGCTCCAGCCCCCGGAAGTGGCGCAACGACGCCGCTCCCAGAGGCAGGGGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACTCCAGAGCACCGCAGATGCCCCAGAGGATGACGTTCAGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACCGACAATCTGGCGTCCCTTGATCTCAGACTCCAGGTGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACGATGGCAAGAGGGAGCGGGCCCG # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA //