Array 1 112852-115320 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV802476.1 Corynebacterium sp. HMSC065D07 Scaffold252, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 112852 29 96.6 32 ............................G TGGGGCGGCGCAGGCCGCGAGTAGAATTTTAC 112913 29 96.6 32 ............................T ACCAGGCCAGCATCCAAACTTGGAAGTCCAAG 112974 29 96.6 32 ............................G TACAGGGTTGCGGTGGCGTGCTCCGCGATACT 113035 29 100.0 32 ............................. ATGACGGCATTCTGGTTAAGGCCGGTGACCGT 113096 29 96.6 32 ............................G CTCCTGAGACGTAGCAGCATCAGCCGCCGCCG 113157 29 100.0 32 ............................. CTCAACACCTGGGAACCCGGGGGCAAGGACGT 113218 29 100.0 32 ............................. AGCCAGGGGCACACCAAGCCCTACTGCCTACC 113279 29 100.0 32 ............................. TGGATTTTTTGGCCTGCGCGCCCCGGGGTGTA 113340 29 100.0 32 ............................. GCTCGGCCAGTACAAGCTGAGTGACGTTGGGG 113401 29 96.6 32 ............................G ATGGCTACAGCCCCACACGCATCGCTGAGTGC 113462 29 96.6 32 ............................G CTGATAGGGGGCGCGACGTCGAGTCCCGACTC 113523 29 100.0 32 ............................. CCAACCACCGGGCGAGCATTCGGAATGTAGGT 113584 29 100.0 32 ............................. CAATCAACCCGATGGTGGTATCGAAGACCTCC 113645 29 100.0 32 ............................. CATAAGAACGAGAACCATAAGACTAGTAAAGA 113706 29 96.6 32 ............................G ACTTTCAAAAGTCGTTTTCTAGCTCGTCTGGG 113767 29 100.0 32 ............................. GTCACCGGGCGCATCCAGCATTTTGAATGGCA 113828 29 96.6 32 ............................G CACTCAGGGCAGCAATGTGTAGTAGTCATTTA 113889 29 100.0 32 ............................. ATCCACCGGATTACCCTCGAATGCGTTTTTAT 113950 29 100.0 32 ............................. GGAGACCTCACTGTCTTCTATGACGAACGTGA 114011 29 100.0 32 ............................. CGGCTGGCGAAAAGTTCACCTTCGAGCGTCGC 114072 29 100.0 32 ............................. GCGCTCATGTGCCAGTCGCAAATGCAGATGGA 114133 29 100.0 32 ............................. GCCCACATGGAATGCAGCCCCACAACGGCACC 114194 29 96.6 32 ............................G TCCCGCGATACCCCGGCGCAACACCATAGTTT 114255 29 96.6 32 ............................G GAAGCTCAACGGCATCCATAAGGAGTTCAAGG 114316 29 96.6 32 ............................G GGTGGGGCCGTAGCCTCGGCTTCTGCGGCCTG 114377 29 96.6 32 ............................G CAATCACCGCAGAGCTGAAAGATGCTCGCTCT 114438 29 96.6 32 ............................G GCACGGGCAAACTTAACGACGAATTCGGGGTC 114499 29 96.6 32 ............................T GGTCAACCCTCACTAGCGACGGCGCAAACATG 114560 29 96.6 32 ............................G GGCGAACCGGGCAGTATGTGGCTAACGATCGA 114621 29 93.1 32 ................T...........G TCATACGGATGAGGGAAGAGCTTATCGCCTGG 114682 29 96.6 32 ............................G GTAGCTAACTTCTGGCAGATCACTAATATCCG 114743 29 100.0 32 ............................. GCCTCAGCCTCCCCAGCGCTCAAATCAAACTG 114804 29 96.6 32 ............................G ACGTCGTTGATTTTTGCCGCGGTGGCTTTGGC 114865 29 100.0 32 ............................. CAATCAGCAACAACCTGCAGGCCAAAGCGCAG 114926 29 100.0 32 ............................. CGATTCAGCCGGAACCTATGTGGGACGTCTTC 114987 29 100.0 32 ............................. ATCCGCATCTCGGGAGAAGTCACCCTGCCGGA 115048 29 96.6 32 ............................G GGCTGACCCGGTGCGTCGTAGTCGTACACGCG 115109 29 100.0 32 ............................. TGCGCGGTCATGTTCTGAATATCGCCCAGGTC 115170 29 96.6 32 ............................G TCCTACCACCCGCCCCAAAGACAGACGACAGC 115231 29 96.6 32 ............................G CCATCATCCTCCGCGACAAACTCACCCGATAC 115292 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 41 29 98.2 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : AACTCGAAGTCATTGCTTCAGGAGTGAATTGGGCCGAAGAGGAGACACTTTCGTGATCGTTCTTGTCGTAACTGCATGCCCCGCTGGGCTTCGGGGTGACTTATCAAAATGGCTGATTGAACTAACGCCGGGTGTCTTTGTCGGCCGCCCTTCCGCACGAATTCGTGACTTGTTGTGGGAGCGAACCGTTGAACTGTGTAAGGACGGTAGAGCATTACTGGTCTATTCGGCAGCAAACGAACAGGGTTTAGAATTCCGGACTCACCGGCATCATTGGCAACCACAAGACTTTGATGGTGTCACGCTCATGGTTCGTCCTGCTCCTGGAAGCAAGAAAGTTCAAAACAGGACTGGTTGGTCACAAGCCCGACGGATTCGTTCGGCATACCAGAAACAGAAACGAAAATAGCTGAGGAACTCTAGACAGGTTCTGTGTCTCTTCCGAGAAGAAGCCGTATGTAAACTGAGGGTTCGGCTCCTTTATACGCTGCTCAGCAAGT # Right flank : CCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTGCTCCCCGCGTGAGCGGGGATGAGCCCCACAAGGAGGTAAGCGCTAATGGCACGCCACTGTGCTCCCCGCGTGAGCGGGGATGAGCCCTATCCAGTGTCGTTTGAGGACGTATTCGACGTGTGCTCCCCGCGTGAGCGGGGATGAGCCCCCACCACACCACCAACGACTTCAAGGTTGTAAGTGCTCCCCGCGTGAGCGGGGATGAGCCCACGGCTTTACCGCTACTTCCGCCCCCGGAGACGTGCTCCCCGCGTGAGCGGGGATGAGCCCCACAGCAGGGGAGCAGTCGTGAGATGGGAGAGGTGCTCCCCGCGTGAGCGGGGATGAGCCCGCAGTAGAGCAAGTCAACGCCCATACTCGGGCGTGCTCCCCGCGTGAGCGGGGATGAGCCC # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.72, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 115425-117224 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV802476.1 Corynebacterium sp. HMSC065D07 Scaffold252, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 115425 29 100.0 32 ............................. CACAAGGAGGTAAGCGCTAATGGCACGCCACT 115486 29 100.0 32 ............................. TATCCAGTGTCGTTTGAGGACGTATTCGACGT 115547 29 100.0 32 ............................. CCACCACACCACCAACGACTTCAAGGTTGTAA 115608 29 100.0 32 ............................. ACGGCTTTACCGCTACTTCCGCCCCCGGAGAC 115669 29 100.0 32 ............................. CACAGCAGGGGAGCAGTCGTGAGATGGGAGAG 115730 29 100.0 32 ............................. GCAGTAGAGCAAGTCAACGCCCATACTCGGGC 115791 29 100.0 32 ............................. ACCGCCATCTTCCGCTGCTCCGCCGGTTCTAC 115852 29 96.6 33 ............................A GGACGGGGCGGGCCGCTTCATTGACACGGTTGG 115914 29 100.0 32 ............................. AAGACACTCCCTGGGAACTGGGATGCGCTGCC 115975 29 96.6 32 ............................G TGGGTTCCCTACATGCGGACGGCTAATGGCTC 116036 29 100.0 32 ............................. CATTAGCCTCCAGATACGCCTGGGCATAAGCA 116097 29 96.6 32 ............................G AGCAGGTCGTATGCCTGCGTGCCGACAAGCAG 116158 29 96.6 32 ............................G GGTGGGCTGTACGCGGAATCGCCAAGAAAGAC 116219 29 96.6 32 ............................G GCCTGCGCGCTATCCCCGAGGACCGGCTCATG 116280 29 100.0 32 ............................. TCCTACCAGCCCCTCGATTCCATCTGCGACCA 116341 29 100.0 32 ............................. GCCGGTGGTAGGGGTAAGAGTCTTGCAGATGT 116402 29 100.0 32 ............................. AGTCCACCAGTGCCCGCCGTCATGGCTACACC 116463 29 96.6 32 ............................G GGTGAGCTACTCGGGTTGCAGCGTTCCAAGGT 116524 29 100.0 32 ............................. GGCGGCGAGGGCAAGAAGGGCCGTATTTTCGT 116585 29 100.0 32 ............................. GGCACCCGCTTCAACGTCATCGACATCGACGA 116646 29 96.6 32 ............................G ATGACGGGCGAAACAGTGTTGAGGGCTTCGTA 116707 29 96.6 32 ............................T CCACCTGGACTATCGAGCGCGCCAAGAAGGCT 116768 29 100.0 33 ............................. TCTTCATCCTCGGCCTCAGGCCACAGGTCGATC 116830 29 96.6 32 ..........G.................. AAACTCGCCGCCCCCGTAAGAGCCGATCTTCC 116891 29 96.6 32 ............................G CAAAGTCCAGAGCATTCGGCGCGCCACCAATA 116952 29 96.6 32 ............................G CCTTCCACAAGGCCATTCCACGCGGAGACAAT 117013 29 96.6 32 ............................G CGAAGAACTGCACGGCGGCGTTGATGTAGCAG 117074 29 96.6 32 ............................G CTGCGCAGCACGTAGGGGTTACTACATTTGCG 117135 29 96.6 32 ..............T.............. AACTAGGCCCGCGCCCTCACACCACTCGCTAA 117196 29 72.4 0 .........A.C...C..C...A.C..TA | ========== ====== ====== ====== ============================= ================================= ================== 30 29 97.5 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : GGTGCTCCCCGCGTGAGCGGGGATGAGCCCCGATTCAGCCGGAACCTATGTGGGACGTCTTCGTGCTCCCCGCGTGAGCGGGGATGAGCCCATCCGCATCTCGGGAGAAGTCACCCTGCCGGAGTGCTCCCCGCGTGAGCGGGGATGAGCCGGGCTGACCCGGTGCGTCGTAGTCGTACACGCGGTGCTCCCCGCGTGAGCGGGGATGAGCCCTGCGCGGTCATGTTCTGAATATCGCCCAGGTCGTGCTCCCCGCGTGAGCGGGGATGAGCCGTCCTACCACCCGCCCCAAAGACAGACGACAGCGTGCTCCCCGCGTGAGCGGGGATGAGCCGCCATCATCCTCCGCGACAAACTCACCCGATACGTGCTCCCCGCGTGAGCGGGGATGAGCCCCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC # Right flank : AGGACGACTACAGTTTGCTATAGTCGGATCTACTGTCGGGACGGCGTCCGTGCAGTTGTCGGAGAGTACGCCCCACGCACGTGGGGATAGCTCGCAAAAGGCCTCTAGTTCTTTAAGGTTTGCGGTGTACGCCCCACGCACGTGGGGATAGCTCGCGAGGACACCCAAGCGCGTGACAGGTCGTCAAGTACGCCCCACGCACGTGGGGATAGCTCGTCTCGGGTCACTGACTTCGGGTCAAGCAACATGTATGCCCCACGCATGTGGGGATAACCTAGGTAGCGCTCACCACGTAAACAGGTATGAGTTTGTATAGACCGTTGGAAGCGTTGTGTCCAACGTGGAGTCGAGCGAGTTTCCCAGTCGTTGTTGTTTTCGATATGGCGTGCACTCCGTTGCAGAATTTCGCGCTTTTCTTCGCTGGAGTTTCAACACTGTCCTAATTTCGTAGTTTTTCTTTTCATGAGAAAACTAGGTCTTCTCCTTTCGCAGTACGCTAG # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 117289-117501 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV802476.1 Corynebacterium sp. HMSC065D07 Scaffold252, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 117289 29 100.0 32 ............................. CAAAAGGCCTCTAGTTCTTTAAGGTTTGCGGT 117350 29 100.0 32 ............................. CGAGGACACCCAAGCGCGTGACAGGTCGTCAA 117411 29 100.0 32 ............................. TCTCGGGTCACTGACTTCGGGTCAAGCAACAT 117472 29 86.2 0 ...T..........T.........C..A. | A [117495] ========== ====== ====== ====== ============================= ================================ ================== 4 29 96.5 32 GTACGCCCCACGCACGTGGGGATAGCTCG # Left flank : ATGAGCCCTCTTCATCCTCGGCCTCAGGCCACAGGTCGATCGTGCTCCCCGGGTGAGCGGGGATGAGCCCAAACTCGCCGCCCCCGTAAGAGCCGATCTTCCGTGCTCCCCGCGTGAGCGGGGATGAGCCGCAAAGTCCAGAGCATTCGGCGCGCCACCAATAGTGCTCCCCGCGTGAGCGGGGATGAGCCGCCTTCCACAAGGCCATTCCACGCGGAGACAATGTGCTCCCCGCGTGAGCGGGGATGAGCCGCGAAGAACTGCACGGCGGCGTTGATGTAGCAGGTGCTCCCCGCGTGAGCGGGGATGAGCCGCTGCGCAGCACGTAGGGGTTACTACATTTGCGGTGCTCCCCGCGTGTGCGGGGATGAGCCCAACTAGGCCCGCGCCCTCACACCACTCGCTAAGTGCTCCCCACCTGACCGCGGAAGCGCTAGGACGACTACAGTTTGCTATAGTCGGATCTACTGTCGGGACGGCGTCCGTGCAGTTGTCGGAGA # Right flank : GGTAGCGCTCACCACGTAAACAGGTATGAGTTTGTATAGACCGTTGGAAGCGTTGTGTCCAACGTGGAGTCGAGCGAGTTTCCCAGTCGTTGTTGTTTTCGATATGGCGTGCACTCCGTTGCAGAATTTCGCGCTTTTCTTCGCTGGAGTTTCAACACTGTCCTAATTTCGTAGTTTTTCTTTTCATGAGAAAACTAGGTCTTCTCCTTTCGCAGTACGCTAGGGTCAGTATCTGTGATTCAGGACGTCGACCCGCTCATCCATTCCCTGTACCAGGTCTTTGATCTCATCGGTGTGGTACTCAACGGCATTATCGGTGGCACGATTGCACGCCGTAGGGAATTCGACATTATTGGCTTCGTCTTTCTGGCGCTCTTTTCGGCGCTGGCTGGCGGCATGATCCGTGACATGCTGATCGCCAGCGGTCCGGCTGCGGCTATCTCTGATCCGCTGTATCTCACGCTGGCGTGTGTGGGCGCGCTCATTGCTTTCTTGACGGA # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACGCCCCACGCACGTGGGGATAGCTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //