Array 1 3381382-3380558 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNIF01000003.1 Bryobacter aggregatus MPL3 M017DRAFT_scf7180000000020_quiver.3_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3381381 36 100.0 30 .................................... GAAGCTGACGTTCGAGGCGAACTCTTCTAT 3381315 36 100.0 29 .................................... TCGTCGAAGGGCGAGAAATGACGTATGCA 3381250 36 100.0 30 .................................... TACGTCGTCGATAGGAACTAGATCTCCTTG 3381184 36 100.0 29 .................................... GTTGCAATCTTACTATCAGCGTCAAAGCT 3381119 36 100.0 30 .................................... CATTTGTTCGTACTACCTCCCCGCCAGAAA 3381053 36 100.0 30 .................................... CTTAGAACACCAATCAACAGAGAACTCGAA 3380987 36 100.0 29 .................................... TCAGGGATGATGCAGAACGAGCCATTGGC 3380922 36 100.0 29 .................................... GGTCCGAAGCGATGGGTCTTCTGGCTACG 3380857 36 100.0 30 .................................... ACCGAGGAGAACAGGGTAACGTCTCCCCGC 3380791 36 100.0 30 .................................... GCATGACAGTTCGCCATCTTCGCGCGATAC 3380725 36 100.0 30 .................................... ACGCCCACGGCGCGATATCCGCGTACTCAT 3380659 36 100.0 30 .................................... TCTCCCTTTGTGGAGAACCTTCTCCGGTGA 3380593 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 100.0 30 GCTATGGCTAGTTGGGAATGACCGCTTCGATATACT # Left flank : TGCCGATCACTGCGGCAGACACACTGAATGATCGAGTCATCCCCTTCTATGACGATGAGAAGGTGGGGATCGAGCGGTTGCTCACCGACAATGGCCGCGAGTACTGTGGACTCGAAGCTCGTCATCCCTTCGAGATCTATCTGGCGATTAACCAGATCCGCCACAAGAGAACGCAGATCGCTTCCCCTCAATCCAACGGCTTCTGTGAGCGCTTCCATCGCACGATCAAGGAGGAGTTTTACAGCATCAAGTTCCGGCAAAAGATCTATCAGTCTGTGGCTGAATTACAAGATGATCTGGACGCCTATCTGAGCTTCTACAATCGCCAGCGACCCCATCATGGATATCGGACTCAAGGCCGAACGCCATACCAGGCTTTCCTCGATGGGAAAATCGCCCAGGCGCAACCTATGGCAGCATGAAGTAACCGAATCTCAACCGAGGCCCGTAAGCCCTCGTGTCCGGAGATCTTCAGCTAAATACAAATACCGGCTACAACG # Right flank : AGGTGCCCTGCAAATGATTCATTTTGCAGGGCTTTCCCGTCCCGGAACCCAATTTTGGAGCTGCTGAGGCATGAGTGCGGCGATCGGCCGGCTCAAAATAAGGAGATTTGCATCGGTGGGTCTTCTCGTTTCTCGCGCTGACGACCGCTATAAATTTCCATTTTTCCGAACTGATGGTCTGTGATTCCAAGAATCCTCACTTGTCCTTTGGGCGGAAGGGCCGAAACAATCGTGGTGCGCAGCGAGGCAGCAGCCTCCTCACTAGCCAAGTGCTTCGCATAAACAGAGAACTGTAACATCGTAAATCCCTTATCCAAAAGTTTCTTCCGAAACTGTGCGTAGTGACGACGATGCTCTTTCGATTCCACAGGCAAGTCGAAGAGAGCAAAGAGCCACATGGATTTATAGGCCGAGAGCGGCACTGCTCAAGGCTCCTCATCCGTCGAGAGAGGCGAATCAAGCCCAATTACGAACTTCGATTCCCTTGCCAGGATGACTCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTATGGCTAGTTGGGAATGACCGCTTCGATATACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 3382689-3383381 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNIF01000003.1 Bryobacter aggregatus MPL3 M017DRAFT_scf7180000000020_quiver.3_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3382689 36 100.0 30 .................................... CGATTGAGGGCTAAGTGTTGCTCGGTTGCA 3382755 36 100.0 29 .................................... ACTCTGACATTGGCACCATTCGCAGCATT 3382820 36 100.0 29 .................................... CGGACGCGTGGACTCCTCGCCCAGTCGCG 3382885 36 100.0 30 .................................... GCTTTTCGCCAACCGCTTTACGGCATTCCA 3382951 36 100.0 30 .................................... CAGATTTGATCCTGGTAATCACAACCCTCT 3383017 36 100.0 30 .................................... ATGCCGAACACAGAAGTATTGGGAACATAA 3383083 36 100.0 30 .................................... CAGATGGAGCAGGCGCAGTCTGCTCGGCAT 3383149 36 100.0 30 .................................... AGGGTGACACCGGCAGAAGCGGGCGAAGGG 3383215 36 100.0 30 .................................... CGCTCACGTGCTGGCATGGAGTTGTCCAAA 3383281 36 100.0 29 .................................... GAAGCCGCTGGGGGTCCCGAACCTTGCGA 3383346 36 97.2 0 ........A........................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 99.7 30 AGTATATCGAAGCGGTCATTCCCAACTAGCCATAGC # Left flank : AGAGACACCGATGCCGACCAAACGAAGCTGGTCGGCAATGCGGATGTAACTGTAGGTCGGATACTGCGCCGTCATCTCGAGGATCTGCTTTTCAAGCTCGGGCGGAGTCTGATTCGGCATCCGAGGCGTCCGGCGTTGCCTCGGCTCAAGCCCGTCGGCTCCGTGCTTCTCGTAGGCTTCCTTGATCTCGTAGAAGTGGCTGCGGCTGATGCCGGCTCGCTGGCAGGCGGCCTTGATGTTGCCCAGTTCCTGGGCGAGTTGGAGCAGTCCAATGCGCGCTTTGATAAGCTTCTGGTTGTCGCTCATGAGTGTGTCCTTTCGGGGTGATTTTGGTGTTTTGGAAGATTCCAAATCTATCACCGTAAGGACCCGCTCGGGGCGCTTAGGGGCTTCGGCTCCAGTCGGGCTACGCCCTCCCTTCGCCTCTTCCCCTAAGCGCCGTTTCCCATCATTGTGTCCGCTGATCTTCCGCTAATTTCACGGTATTGTTGGTGTGTTTG # Right flank : CCGCGGAGGCCGAAGGGGGCGCCCTAGCGTTGATAGATATCGCGGCCCAGAAAGCGCCTAAGCCGGGTATTTTTTTCAAGCGTTCTTCCGCGGTCGTACAACTTACTGTGTGGCACATCCGAGCCTTGCTGCTCTTCTTATTCTGCAGTCGGTTTCGTAGCGTGAATGGTGAGGCGCTCTCCCTGGTGCTTACTACTCCACGCCCCTCTATCTTCTCGTAAGCACAACATGCGTCGCGTGTTCCGTGGCTTGGTGCTCGGTGACAGAGAACCCCAGTGCCGGCAGGTCAATTCCGGGGAACAGTGCCTCCCCTTGACCGAGGGCGACCGGGGCCAGTGCAAAGTGGAGCGAATCAATCAGTCCAGCCTGCAGATACTGCCGCACGGTGGAAACACCGCCTCCGATTTTGACGTCCTTGTCTCCTGCTGCTTGCTTCGCGAGCCGCAACGCCTCTTCAATTCCGCCAGTGACAAAGTAGAAGGTTGTCCCGCCCTCCATTA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTATATCGAAGCGGTCATTCCCAACTAGCCATAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 227815-232171 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNIF01000004.1 Bryobacter aggregatus MPL3 M017DRAFT_scf7180000000021_quiver.4_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 227815 32 100.0 34 ................................ AGATGGCGCTCGACCTTGATGGTGCGGGCCCGTG 227881 32 100.0 34 ................................ GAGGTAGCTCGAATCTTAGTGCGTTTATCGGCGG 227947 32 100.0 34 ................................ GCGGGACGAACTCAGTGCGAAGCCGCTCGAAGCC 228013 32 100.0 33 ................................ CTATCTGCAAGCGAAGCAGAGATCGCACTGGGA 228078 32 100.0 33 ................................ ACATGTCCGGGTTGTAGCCGTTGATGATGGCGT 228143 32 100.0 33 ................................ ACCGCCAGAATGGACAATCCCCCAGGCCGGCAC 228208 32 100.0 33 ................................ AGTATCTTGCTGCGAAGCCGGTTATCGCGGGAA 228273 32 100.0 32 ................................ CCAACGCACAGCGCAGTCTTGGGGATCATCAC 228337 32 100.0 34 ................................ TCACCCGTAGGATCACTAGTACTGTTGCTTTTTA 228403 32 100.0 34 ................................ GTGTTTCGTGCGGGAGCAATAATTCATGACGCCT 228469 32 100.0 34 ................................ CTTCGCGCGGCTTTATGCATCGCCGGATCAAGGC 228535 32 100.0 34 ................................ GTGACCGATGGCGAGAAGAGTTCGAAGCGAAAAC 228601 32 100.0 35 ................................ CAATAGCGGGTCTCACCCTTACCCCACTCGTGTTC 228668 32 100.0 33 ................................ TCGCCCTTGACCGCAGCCAGGCGGAGCGCTGTT 228733 32 100.0 33 ................................ ACATCACGTTGTCTCTCGACCGGGCGGCGGGGA 228798 32 100.0 33 ................................ GATTACGCCGCGACTGTAGACACTTCACCACAT 228863 32 100.0 34 ................................ CACCGTGCCATTCAGCTTGACGCCCCACGGCTCG 228929 32 100.0 34 ................................ GAGTTCTTGCGGTTTGTGCCCCAGGTCATTTCGG 228995 32 100.0 33 ................................ GGCTACGCCAGCGCTGCTGAGCCCCAGACTGCA 229060 32 100.0 33 ................................ GGCGACGATAACCTCTGACGAAAGCCCCGCATT 229125 32 100.0 34 ................................ TACGGACGAGAAGAAGACAAAGGGCGTCCCGCCA 229191 32 100.0 33 ................................ TCGAAGGTGTCAACGTCAAGATCGACAATCTCG 229256 32 100.0 33 ................................ GTTGGTCTCAGTGTTGTAGATGTACAGTTTCAT 229321 32 100.0 33 ................................ AGCTTTGAATCGCCAGGCGCTCGGGAAGTCTTT 229386 32 100.0 34 ................................ ATCGGCATGCCTTGCTCGATGATTCGGTCGCCGC 229452 32 100.0 34 ................................ GGTCGACAACAGTAAGATCGACAACCTTGCTGTC 229518 32 100.0 33 ................................ GCGTAAGTGGCTACTGAGTAAACTCAAGCCCGA 229583 32 100.0 32 ................................ TGCCCGTTGTAAGTTCGATCCAGCACGTCGCA 229647 32 100.0 33 ................................ TTCGCGACAGGTTTCAGCTTTGAATCGCCAGGC 229712 32 100.0 33 ................................ AGATCGTGCTGGTTTGCGACCTCTGCGATGAAC 229777 32 100.0 34 ................................ ACGTACAGACTACCTGAACTCCCTCCGCAACAAG 229843 32 100.0 35 ................................ CTCGAAGGAATTGCCGACTTTGCAGAAGGCATCGC 229910 32 100.0 32 ................................ ATCTCATCCATGTAGCCGGGTGCAGGCCGCTC 229974 32 100.0 33 ................................ AATCAGAACGCTTCGTCTGGCTACGTCATCCGC 230039 32 100.0 34 ................................ AAGTTTCGAATGCTCCTCAACTTTTGGGTACGGC 230105 32 100.0 33 ................................ TAGGTGGCACTGGTGAGATCAACACTACGCCCG 230170 32 100.0 33 ................................ AAAAACGTCGTGTTGCCGATGCAGCAGTACTCA 230235 32 100.0 34 ................................ ACAACAGTGCCAGTGCCACTGGCAACGCGGAAGC 230301 32 100.0 33 ................................ TTGCAATCTAGGAATCCTCTTTTTCAGATTTCT 230366 32 100.0 34 ................................ TACGAATCGTTGCTTTCCCACGGCCTGAATATGT 230432 32 100.0 35 ................................ TCGGTGCACCATGAGGTGTCGCCGCCCATCTTGAC 230499 32 100.0 33 ................................ TTTAACCGCGTGGCGGAGCATTTGTTGGCGCAA 230564 32 100.0 34 ................................ AAGACTAGCGCGAGAATCAAAATGTTTATCAAAG 230630 32 100.0 33 ................................ TCGTGTGTTGGTCATGAATCAACAATACACGCT 230695 32 100.0 33 ................................ CATTGATCCGCGTTGAAAAGTTGATTCACTTCA 230760 32 100.0 34 ................................ TCGGTCGCCGCCAGCGCCGAGTAACGCTGCATAT 230826 32 100.0 33 ................................ GAGAATCAACCGATCACTCTTATCGTGGTGATA 230891 32 100.0 32 ................................ CGCATAAACTATTTTCGTGAGAGTTGCATTTT 230955 32 100.0 32 ................................ TTGGAAGATCTTTTATGAAAAATCTCCCAGTG 231019 32 100.0 33 ................................ TGGGATATTCCTGATCAGTAGTAACGCCGCTAG 231084 32 100.0 35 ................................ TTTCCCAGTGCCGCAGAACCCGATTATTGCCGGAC 231151 32 100.0 34 ................................ TTTTTTAATTTATCCCAATCAATCGATCTGGCCC 231217 32 100.0 36 ................................ CAGAAGAATTCCCGCGTCGACGAGACCACGAATCAC 231285 32 100.0 33 ................................ CCATCGCAATCGATCAAAGAATACGAAAAATGG 231350 32 100.0 33 ................................ CGGCCGCCGGCAACTGAAGAAGGCGCCATGAAC 231415 32 100.0 34 ................................ TGGTCCTGAAGCGGTTTGCTTTTGCTCGGCTGGA 231481 32 100.0 33 ................................ CGGTGCCATCGAGCGCGCCATTATTATGGCCGG 231546 32 100.0 34 ................................ GGCTGTCAAACTCCTCACAAAACATTGGCAATTT 231612 32 100.0 35 ................................ GAGAAGGTTGCGACGGCCACTGTAAACCTACCCGA 231679 32 100.0 33 ................................ ATGCGCTCATTAATCAAATGCGCGCGGACGACA 231744 32 100.0 34 ................................ ACGCTCAGATAGAGACGGATGAGTATTGTACCCT 231810 32 100.0 33 ................................ CACCGCCTCCGGCTGCACGAACGGCAGCACCTC 231875 32 100.0 34 ................................ GCGGGCCGCCGCGAACGCCGCTTGAGTGTCAAAG 231941 32 100.0 33 ................................ GCAAACGCAGCGGTTGGGACAAATCGTAAATCA 232006 32 100.0 34 ................................ TCGCTGTGCTCCCCGCCGTGACTAAGCCGGATGG 232072 32 96.9 34 .........................G...... TTAGTGCTACCTATGTAGGTAAAAGAGCTGTTGC 232138 32 78.1 0 ...A...............T.....GG.CC.G | GA [232159] ========== ====== ====== ====== ================================ ==================================== ================== 67 32 99.6 34 GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC # Left flank : GCGCTGCTCTGGAAGGGGTGAATCGGGATGCTGGTGCTAGTAACCTATGATGTTTCGACCGAAACGTCCGCGGGACGAAAGCGTCTGCGGCGAGTGGCGAAGCATTGCCAGAATTTCGGGCAGCGGGTGCAGAACAGCGTGTTCGAGTGTCTGGTGGATCCGGGGCAGTATGCCGATTTGCGTGCGAAGCTGCTCGATGAAGTGGATCTGGATGAGGACAGTTTGCGGTTTTACTTTTTGGGAGCAGAGTGGAAGCGGCGGGTGGAGCATCACGGGGCGAAGGTTGCGTACGATCCGGAAGGTCCGCTGATTATTTGATCTTGCGCGGACGGGAAGCGGGTGCTGTGACACGGGGAGGTCCGCGCGCCGTGTATCTGATTGATTTGATTGGTTTTTGCGGGATGGGGATTGTCTTTGTGTCTTCTGGCGCACTGGGCGTCAGACAGGTGCGCGGAAATGTGCGGCTAAACACCTGAGATGACTGGGGTTATACTGGGGTG # Right flank : GCGAAACCCAGTCACAAGCAGAAGAATTTTATTTTTCATTTATTTTGAATGAGTTGTGGGTCATTTGTGTAGAGATATTCCGGGTGGGTTCTCCACGATTCCTATCTTGGTACCGTCATGAATGATTCCCATTGGCTTCGAGGCGGACACCGGAAACTGGTGAATGCCCTCCTGTTTGAATCTCCGGTGGAGACGGTTCGTACCCTGACTGCCGCCTCCTCTCCCCATACGGCTCCTCCTTCCATCCTGGAGGTGGTGCGCCACCATTTCTCCTTCGATCCCGATGCCATGCAGGAGCAAGTTTTACTCCGTGGCGGGAAACGCCTTTTGCTTTGCTGCACCCGGCAATGGGGCAAGTCGACAACTGCTGCCGCTCTTGCCGCCTATCGTGCCTTGACCGACCCGGAATCCTTAATCCTTGCCGTCTCCCCGACGCTGCGGCAGACCGGAGAATTGATTACGAAGGTCCGTCAGTTTCTCGAAAAGGCCGGTTGTGTGCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCTCGCGGGCGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1146840-1148833 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNIF01000004.1 Bryobacter aggregatus MPL3 M017DRAFT_scf7180000000021_quiver.4_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1146840 32 100.0 33 ................................ CGGGCCAGCACGTCGCAGATAATCGACACCATC 1146905 32 100.0 34 ................................ CGCCTCAGAGTCTGGCTGTATTGCGGACCTTTGC 1146971 32 100.0 33 ................................ AGCTTTGAATCGCCAGGCGCTCGGGAAGTCTTT 1147036 32 100.0 32 ................................ GCCGCGTACCCGGATCGGTGGGATACTCGCAG 1147100 32 100.0 33 ................................ CAATACCCAGCAATGTCCGGAACAATGTCAGCT 1147165 32 100.0 33 ................................ AGACAATCTTTCTGAAGTTGCCGGCACTCGCTC 1147230 32 100.0 33 ................................ AGCGTCTCGTGACCCTTGCCCCGAGTCGTTCCC 1147295 32 100.0 34 ................................ GCTTAACACCGTTCGAATCCTGGATCACCGAGCT 1147361 32 100.0 33 ................................ ATAGAAATGCTTGAGTTTGTCAGGCATTGAGTC 1147426 32 100.0 33 ................................ GTCGAACTCGACGGATCACGCCAAAGTTGTCAT 1147491 32 100.0 33 ................................ TTCCGATCCTGTGTTCGATTTGACGCGTTCAGC 1147556 32 100.0 34 ................................ GACAATCGGCCTAGGCCTCTATGTGCTCGCCGCG 1147622 32 100.0 34 ................................ ACGAGCCGAGGGGAGCAAGCGTCAGTCGGGTGAT 1147688 32 100.0 34 ................................ TCGGGTCTGTAGGAATCGAAAGATCCGATGAATC 1147754 32 100.0 32 ................................ CTCCCAGCCTCCTCTTCCGCGATCATCTGTGC 1147818 32 100.0 33 ................................ TCTTCAGGTGCAAGGGTTTCGCCTTGGGCGTAG 1147883 32 100.0 32 ................................ GATACTGGCCGCCTGGGGTGATCGACGGGAAG 1147947 32 100.0 34 ................................ AACTCCAAACGTCCAATCTCATTCGAGATCTTGA 1148013 32 100.0 34 ................................ TGCTGATAGACCAAGAAGAAGATGGAGGTTGGGT 1148079 32 100.0 35 ................................ TTGAAGAAGCTCCCGGACAGCGCCACGCTCTTCAT 1148146 32 100.0 36 ................................ GCAGCAACTCATCAAGGTACTGCTCGAAGAGCTTGG 1148214 32 100.0 33 ................................ ATGAGCCGATCGGCCTCGTGATCCTTGGCGAGG 1148279 32 100.0 34 ................................ TTGCTCCTTTTCTGTTCGCCTCATCGGCTTACAT 1148345 32 100.0 33 ................................ ACCGAAAAAGCGATGGCTATCCGCTCGGAGAGC 1148410 32 100.0 31 ................................ TCAGCGCCTAGTCATTGAGCGCATTGAAAAC 1148473 32 100.0 34 ................................ CGCCACCCGGCCACGTAGAAGCAGTAGCCGGGGT 1148539 32 100.0 35 ................................ TCGAGCGCTTTGAAGAATGCATTTACGGCCTCCTG 1148606 32 100.0 33 ................................ AATCCTTTTTACTCGGGAACTCAGTATTATGGC 1148671 32 100.0 33 ................................ CCTACTCGCCAGCCGGAGTACTCCGCCGCGCTC 1148736 32 100.0 34 ................................ CTCAGTGGATCGCGGCCCCTCTGCGGCGTCCGCT 1148802 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 31 32 100.0 33 GTCGCGCCCTTCACGGGCGCGTGGATTGAAAC # Left flank : TGCCAAACGCCATCGGTGTGGCAGAAATAATGCACACCTTGATCACGGTTGCACTCACTGCGATCGTAGATGTCGCGGTCTGCGCCAAAGCCCCTGGAACGAACCAAGCCAGGAGATTGAGGATACAAATCGGAACAGACCGGCGAAGGAGCCGAGTAAATAGTAAATTCATGGAACTCTCTCTGAAGGCCATATCGCCCAATTTAAGATGGCAGTGAGTAGTTTTTATTTTCATATAACACGACGAAATAGTAATGAATTACTCATTTACTCAGTTGTGAGAAGTTCGACTCCAGACAAGATCTTGAGACTCGCAGGCTTTGCGCGGATGGGAAGCGGGTGCTGGAATCCCGGGAGGTACGCGCCAGCTGGAACAGATTGATTCCCAATGGATTCCGGCCTCGGGGCCGGACTGGAGATGCAGGCATGGGGCCAGTTGGAAGGAGGTGCGCGGAAATGGGTCGCCAAGAGACTGGATCCATTCGAGATACACTGATGCC # Right flank : CGATCGCCCGCACAGCTTTGTCTCCAAGGGCGGAGTCGCGCCCTTCACACCCAATGTTTTTGAGCGCCTGCTTCACACGCAGGAGGTCCGGGATTCGAGTCCCTGCGCCCCGTGATGGAGACAAGTTACCAAGCTGATCGTGCCTTCCCCTGCAATCGCAGCCTCACTCACACTCCTTTCAAACAGCGGTTTGAAACGCCCCGCCAATCGGAGGAAGCGGCCGACCGGGTATCCTGAAACATTCGATGAGATTTTGCTTTTGGCTGCTGTTCACAAGCGCATTATTAGCGCAAGAGAAGAAAAAAGAAACACTAGTCGTCACTGGCTCCTACGAAGCCATCCCACTAGAAGAGGCGGAGCGATCGGTACGCGCAATTCCAGCGAAGGAACTCACGCCGCTGGCGTCTTCGATCGTCGACTATCTCCATCTCGACGCCGCACTTGACCTCAGGGGCCGGGCGCCCAATGGCGTCAATAGCGGCCTCTCCATTCGCGGCGGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCTCTTCACGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //