Array 1 1099666-1101705 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHRV01000001.1 Prevotella intermedia strain KCOM 1107 KB29_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 1099666 47 100.0 30 ............................................... CACAGCACGACGTTGTCGCCAGCCTTTGGA 1099743 47 100.0 29 ............................................... ATAAAACTCCTGCGTGTTATTCCGCATAA 1099819 47 100.0 30 ............................................... AAGTATGTGGATATGAACGTTGATAAATAT 1099896 47 100.0 30 ............................................... AAGAAGTTAAACACTGGGAATCTCCTTCCG 1099973 47 100.0 29 ............................................... ACCTTTTTTGTTGTTGTTTGTTTAATTAT 1100049 47 100.0 30 ............................................... AGGCTTGGACGTCCATTACGAAGTAGTCGA 1100126 47 100.0 30 ............................................... ACCCATTTCAGAGTATTTAGGGAAGCGTCT 1100203 47 100.0 29 ............................................... TCCTGTTCCTCTATTAACGTACTTTATCA 1100279 47 100.0 30 ............................................... GACCGTGTGAAATTCGAGTTAAATTTGTTG 1100356 47 100.0 30 ............................................... GATAAGTTAAGCCGAGTATTTGACGGGCGC 1100433 47 100.0 28 ............................................... AGCCAATACATGATGTATTATACAATAA 1100508 47 100.0 30 ............................................... TTTTAGCTACTGAACGGTGAGCTTCGTCAC 1100585 47 100.0 30 ............................................... CACTGTCTTATGCTTACAAGCTGCCAACAA 1100662 47 100.0 29 ............................................... TGTTTGCCTGTTGCCCGCTATGGTAGCGA 1100738 47 100.0 30 ............................................... ACGGTGAAATTCATTGACAACGCAACGAGT 1100815 47 100.0 30 ............................................... TATCATCACTGACAGGGCGGAAAAGACAAT 1100892 47 100.0 30 ............................................... CCCCAATTCTTCCTCGTGTTCCGCACCTTC 1100969 47 100.0 30 ............................................... GAATAGACGATAATATGCGTCATCAATAAC 1101046 47 100.0 29 ............................................... GGACAGTTACAAATTCTTGCCATTTTTTC 1101122 47 100.0 30 ............................................... GACGTTGTAGGTTGCAACGAAATAGATAAG 1101199 47 100.0 30 ............................................... CTCGTGTTGAAGATATGACAATTATAGACG 1101276 47 100.0 30 ............................................... CCTAATAGCGTTGTGGTTGCTGAAACTTTT 1101353 47 100.0 29 ............................................... CGCCCCAAGTGTTTCCCCATATCTTCAAA 1101429 47 100.0 29 ............................................... TCTTTGTCTTTTGTACACCCTCCATAAAC 1101505 47 100.0 30 ............................................... ACGCCTGCTGTTCTTTCAGCCTCTCCAAGC 1101582 47 100.0 30 ............................................... TTTTTCACACCACGCATACACACCTGATAA 1101659 47 97.9 0 ...........C................................... | ========== ====== ====== ====== =============================================== ============================== ================== 27 47 99.9 30 GTTGTATTTACTAATGCAAAGATACTAATTTTAAAGCTAATCACAAC # Left flank : AGCAAAGACGATTGGTTTATCCTGAATTATAAAGCCTATTAGTGGAAACTTATAGATTTAGTCAATACAGAAGTATGTGGTTAATGGTATTTTTTGATTTACCCACAGATACAAAGAAAGAACGAAAAGCAGCTTCACTCTTTCGTCAAAACTTGCTGAAAGATGGATTTACAATGTTTCAGTTCTCCATTTATATACGCCACTGTGGTAGTAAAGAAAATATGGAGGTACATATTAAAAGAGTTTCCACCTTTATTCCAGCATACGGAAAAGTTGGAATAATGGGCATTACAGACAAACAATTTGAAGAAATAAAGCTATTCTATGGTAAGAAACCACAAAAACCAAATGCACCTGGAGCACAGTTAGAACTCTTTTAATCCTTCTTCTAGAAACAATAAAGTTCCATTCTTAACGAGTGGAACTTTATTTTGCTTGCATTTTTCTTTCTCTCTAATCTTTCGTAACAACACTGATGTTCATCACTTTAATCCATTTGA # Right flank : CTAACGACACTTCCGATTTATTGTTCTAAAATCAAGTAAATGGGGCAATAAATTTAACACAAGCGGAAAGGGGAAAATAGAGAAAAAGAGAGCAGGAAAATAGGGGTCGAAAAGTAAAAGAGCCGCTTTTGCAATGCAAAACAATAGGTTTTACCGTGCAAAAGCGGCTCTTTTGGATTACAAGAACGGCTCTTTTGCAGAGCGAAAAGATGATGATAGAGCTCAAAATATAGTCTATATGCGAACAAAAATATTCGTTTTGCAACATAAAAGGTGCAATTCCGTTGCACAACACTACCCTATAAGCTTGCAAGAAGCTATGAACGAAGCACTTATGGTAGCACGCAAATAATGACGTTATTTGCAAATAAATAATTTGAAGTGCAGAAAAGTGCCCGTAATTCGGAAGTTGGGGCTTTGAAATTTAACAGTTTCGGAGTCGTTTTAACGAATATTCAGACTTTAACAAATGAAGGTATGCAACCACTGAAAATAAAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTATTTACTAATGCAAAGATACTAATTTTAAAGCTAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.47%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 683614-683314 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHRV01000002.1 Prevotella intermedia strain KCOM 1107 KB29_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 683613 37 97.3 29 C.................................... CACGTGTAACGATAGCACAGTTTCCGTCC 683547 37 100.0 29 ..................................... CTCCACGCCTAATATCTTAGCTTCATAAG 683481 37 100.0 28 ..................................... ACCAACTGATTTTGCCTTTTTAAAAGAC 683416 37 100.0 29 ..................................... ATCATCGGTTCACCCCCTTCGCTTTTAAC 683350 37 94.6 0 ...........................C.C....... | ========== ====== ====== ====== ===================================== ============================= ================== 5 37 98.4 29 TGTTGCATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Left flank : GTGCGGAATGCCTTTTCGCACAACCAATACCCAATGTACGATGAAAATCTCTTCGGAAATATTGAGCGGTTCAGCCTTTCTTCTTCTAATATTATAGAAAGTAAGGGGCTCGATATTGCTGTGAAACTGAAAGAGGAAGTTAGTAAGGCAGCAAAAAAAATACAGAACGAGGAAGATAACAAAAAAGAAAAAGAAACTTAAAAACAAGATTATGGATAGTTCACTAATATAAAAAGGGGGCAATGTTGCTGATGTTGAATACAGCAAGCACGCCTATGCGCTGCTGCTTACTGCGAAGGACAAGCCCGACGAAACGATAGAAATAAAGAATGAGAAGCTTGCAAAGAGAATGATAGAAATTCATCAGAGCCTCTCAATACAAATCAGAAAAGATATAAATTTAAAACAACGAGATTTACAATTCGATAGTTAGAATGCGTAAAATGGGTGGTGGAAAGAAAGGAACAAAACATATAAGAATCAGATAGTTAGGTTAGGTG # Right flank : TTATTAACAAGCAAGGGAATGGAATTGGGGGAGTAGAAAATGGAAGGGGAAACACGCCTTTCTATGGGTGAAAAAGGCGAGAAAGGTGTAAATATTTTTTTACAAGCAAAACTATTGCGTAACTATCTCGTTATCAGCGCATTGTAAAACCTATTGTTTTGCATTGCGAAAGCGTAGGTTTTACTCGGTAAAATCGAAATTATGGTTTTTCTATGAAATTATCTTTACAAAACAAGAGTGATTTTACGTCGTGGAAAGTGTAGAGGTTGTGGCGTGGGTTCGGGCATCAGCACAAGGGCGGCTTGCCGACAGTGCGACATCGGCAACGGTGGTTGGGGCTTCTGCATCGGCTCGATGCGGTGGTTCGTTCGGTTCTGTTAGCTTCGGTTGGTTGCTCTTCGGCTGTTCACGAAGGGTGCTTCGGGCGTCAGCTTTTACGGTTCTTGGGGAACGAGAAAAGAGCCGCTTCGCTGCCGAATGCCTTGCAAGGGGCGTTATGG # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTGCATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //