Array 1 1319614-1318483 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029188.1 Streptomyces tirandamycinicus strain HNM0039 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 1319613 33 90.9 28 .............................C.CG TCGACACGATCGACTTGTTCGACGCGGC 1319552 33 93.9 28 ...............................AC GGTGCAGTTCGAGCAGCACCTGGGACGG 1319491 33 97.0 28 .............................C... CCGCGCCCACGCCGACCTTCACGGCCCG 1319430 33 97.0 28 .............................T... GGAGGTCGCCCTGCTCCCGCATGGCGGC 1319369 33 90.9 28 .............................T.AC GGTCCGACTGGACCGAGGACGAGGCATA 1319308 33 90.9 28 .............................CAC. TCGCCAGGAAGGGCTGGGCCCTTGTCGA 1319247 33 90.9 28 .............................G.CG CGAACGCGACGTACATCGCTGAGGCCAC 1319186 33 90.9 28 .............................G.AC AGAGTCCCAGAGTTCCGAACTCCCGGAC 1319125 33 87.9 28 .............................GTTC ATGGGAGGACTCCCGGAAGAGAGGGGCC 1319064 33 90.9 28 .............................CA.T TGCGGACGGTCCACACGAAGGGCCGGTC 1319003 33 97.0 27 ................................T CTACAAGGCGTGCAAGCCGAACACCGC C [1318974] 1318942 33 87.9 28 .......................A.....T.CT CCGCGCGCGCCACGATCGGCACGGCCAT 1318881 33 100.0 28 ................................. ACCCGTTGTCCTCACCACAGACCGGGCG 1318820 33 93.9 28 .............................C..C CGCATGCACGGCCTGCAGACGTGGAACG 1318759 33 90.9 28 .............................GTC. TGCCCTGCGAGGTCGGGAACGGCGTCGG 1318698 33 100.0 28 ................................. TCGCGGAGAAGGCGCGATATAGCCTCGG 1318637 33 84.8 28 ..T..........................GTCC GCCGCGAGCTTCACGGCGTGCTCCCAGA 1318576 33 87.9 25 .......A......G.T............T... GGATGGCGAGGTCGACGGTGACCCC CGC [1318545] 1318515 33 84.8 0 ..........T........C.....G.....CG | ========== ====== ====== ====== ================================= ============================ ================== 19 33 92.0 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGACGA # Left flank : GGAAGGTGGCACTCAGATGTGCGCGAGCCCTATGGGAGCAGAACTGAAAGCCTGAGACCTTCCCAATGTCATGCAGCCCAGCACACAGCGCGACCACGGCCCTCGCCCGCTCTGGTTCCTCCTCGAAACCCATCCCCTGACTGATGCTTCGCCGCTGATTGCCTGACAGATACACATCCCAGATGTGCAGAGCCATCGCTGCTGTATCGATCAAATGCCGCACCAGCGGATATGGAGGCAGCTCAGGATCCAACCCTCTCGACTTGCCCCACAGCGACTGGTCGGGGAATCCCCAGGAGACACTAGACATGAACCATCCCCCCCCAACGCACCGCGCCCTCCGCAGTAGCCATGCGCCGGATCGAAGCACATGCTGCTGACAACGCCGTGCCGACCTCGGCTACGGTTGTCGCGTGCTGAGTGACGCATCTCCAATCTACGGCTGTCGCCGCTTTGGTAAAGGGATGGCAAAGCCGTAGTTAAGCTGCAGCTCACGAAGT # Right flank : GCTCAGCGGCTCGTGACGGCAGTGTCTGACGGCAACGTCACCGCACGACGGCGGACTCCGACTGGCCGTTGCGACAGTCTCGCTCCAGTGCTGTAGTCACAAGCCCACGGCCGCATGGGTGGGCGGGCGAACTTACAAAGCAGATGTCGGCGGTTCGAAACCGTCCGCGCCCACCGCGCTGACCAGCTAGCTGGTTGGTAAAGGCCCAGGCCAGAGCGTGTGCTCCGCCTGGGCTTACGGGTTGCGTCCTGAGAAGTGGTGTACCGGTTCCCACCTGATCCGGGCGTTTGTCCCGGCGTCGGAGTGAGGGGCCGGATAGAAGAACGGCCACCGGCTGATCTTCGAGTTGTCGAGAGCTCGAAGGAGATCAGCACGATGACCGCACCAGACAGTGTGCCCCTGCACGTCCTCGCCGAGGACAACCTCGCCGCGGCGAGTCCCGATCTGCTGCGCGCGATGGTCAAGACGTTCGCCGACGCGCTCATGTCCGCAGAGGCCGA # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.17, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGACGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1329017-1330330 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029188.1 Streptomyces tirandamycinicus strain HNM0039 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 1329017 33 90.9 28 ..............................ACT TCGGTGGACGTCGCCCATTCGGCTGGGA 1329078 33 90.9 28 ..............................ACC CGCAGTTGATCCCGGCGGTGCTGGGGCT 1329139 33 97.0 28 .............................G... GCGGGGAGAGGATGACCGTCGCCGCGGT 1329200 33 93.9 28 .............................A.A. AGGGCACCGCCAGTTTCGCCGACGGCGC 1329261 33 97.0 26 ..............................A.. GCTGGACCCTCGACCGCATGGCCGCA AG [1329290] 1329322 33 97.0 28 ................................A GGAGGGACACGGAGAACGGCGCGCCGTC 1329383 33 90.9 28 .............................TGC. CATGGGCTGGCACAGGAGCCCATCCTGG 1329444 33 97.0 28 ................................A CCGGCTCCGCACCGACCTCCCCAGGATC 1329505 33 93.9 28 ..............................A.C AGGCGGAGTACCACCTGCGGGCCCTGGC 1329566 33 97.0 28 ................................C GGCCCCTCCACATCGGCGGCCGGGTATT 1329627 33 90.9 28 .............................AAC. CGTGGGTGGACCCGGTGACCAACTGCCG 1329688 33 93.9 28 .............................T.A. CCACCTCCTTCTCATTGCCCGCGAGCTG 1329749 33 100.0 28 ................................. AGATGCCGCGGCCGAGCTGGATGTAGCC 1329810 33 93.9 28 ..............................AA. GAGGCCCGCGCCATGACCGCGACCAAGA 1329871 33 97.0 24 ...............................T. AGGAATCGAGGTGTGGCCCCTTTG AATC [1329900] 1329932 33 100.0 28 ................................. CCACACCGCACAGGATGCCGACCAGTGG 1329993 33 90.9 28 ..............................TCT TGGTCGCGACGGGCATGGTGTCCCGGGC 1330054 33 93.9 28 ..............................AC. TCATCGACCCGATGCTGAGCCTGTTCCC 1330115 33 90.9 28 .............................GT.T CGACGTAGCGCTGGGTCGCGGAGTCGCC 1330176 33 90.9 28 .............................GTC. ATAGCCTGCCCGAGCCGGTCGCCCAGGT 1330237 33 97.0 25 .........A....................... TCCAGGGCGTCCCGGCCGGGCGGGT CAT [1330266] 1330298 33 90.9 0 .............................G.CA | ========== ====== ====== ====== ================================= ============================ ================== 22 33 94.4 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGG # Left flank : GCGCCTCCTGCCCCGCATCGTCCGCGACGTCCAGGCCCTCCTCACCCCGAGCCACGCCTCCGGCACCGAGGACCGCTCCGAGCGGCGCGACATCGACATGGTCCACCTTTGGGATCCCAAAACCGGTTCCCTACCGGCTGGGGTCAACTACGCGACAGGCACCAACTGATGCCGTCCATGTTCGTCATCGCCACCACCGCTGTCCCCGACCACCTCCGCGGCGCCCTCTCCCGCTGGGCCAGCGAAGTCGTCCCCGGAATATTTGTCGGCACCGTCTCCGCCCGCGTACGCGACGAACTCTGGACCACTGTGACCGAAACCGTCGGCGACGGCGCCGCCATCCTCGTCCACCCCGCTGCCACAGAACAGGGCTACACCATCCACACAGCCGGCACCCGGCGCCGCGTCCCCATCGACTTCGACGGCCTCACCCTCGTCCGCATGACAGCCCCCACAGCAAAGCAATGGCAAAGCCCAACCTAAGCTGCAGGTCAGGAAGT # Right flank : ATAGTCCACGCGGCACGGCCAGCACAGCGTCCTCCTCGCAAGCGCGGGCCCCGATAGACCCGGACACGCCAGCGGCCTAAGTCCTCCCCCACACCGACACGGAACCTCACGCCCGCCTCCTCGCACCAGAAACGAATCCAGTCGGCCACCGATGAAAACGGCGTGGGAGGCTTGGGCGTGACGACGAGCGCAGGGAGGTGGGATAACGGGTGTCGCAGGAAGCCAGCCCTCGGGGGACGTTTCTTAAGATCGCTAATGCGGTGAAGACATCGATCGACGCCGACCCTGAAATGACAGAGCTACCGTCTGCCGCAGAGATCATGCGCGACTACGGCGTCTCTCGCGGTGTCGCGCTGCGAGTCTTTGGAGTCCTGGAGAAGGAAGGCCGGGCCGAGCCGGTACCCGGTGGCCGGTGGCGCGTCGTTCGGCACGGGCAGGAACGCGATCGTCGGCCTCTGACGGAGCAGATCGCCGAAGTGATCCGAACCGATGAGCTGCAG # Questionable array : NO Score: 5.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:-0.04, 8:1, 9:0.15, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 6766930-6767074 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029188.1 Streptomyces tirandamycinicus strain HNM0039 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ====================================== ================== 6766930 23 100.0 38 ....................... CTCCCGGCGAACGTGTTCGTGATGAAGCCGCGTGACTT 6766991 23 95.7 38 ..G.................... TGCCCGGTGAGCCGCCGGCCGGCGTTGCCGCGTGACCT 6767052 23 95.7 0 .....T................. | ========== ====== ====== ====== ======================= ====================================== ================== 3 23 97.1 38 CGACGCGCCCGCCGGGACGGCGG # Left flank : CCTGTCCCGGGAGGTGAAGGCGGCGTACGACGCGCCCTTCCCCGACGACTCGTTCAAGGCCGGTGCCCGCCAGTTCCCGATGCTCGTACCGGTCTCCTCCGACGACCCGGCCGGAGGGCCGAACCGCGAGGCCTGGCGGGTGCTGGGGCGATTCGACAAGCCCTTCCTCTGCGCGTTCGGCGACGAAGACCCGATCACCCGGGGGCTCGACCGGATCTTCCGGGAACGCGTGCCCGGGACCAGGGGGCAGGACCACGTCACGGTCACCGGCGGTGGGCACTTCCTCCAGGAGGACCGGGGCCGCGAACTCGCGGCGACGGTGAACCGCTTCATCGGCTCCGGGACCGGTCCGGACGGAGGTCTCTGAGGCGGCCCGGGACGTCTCCGGGGCCGGGGCGCCCCGTTGCCGTGGGATGCGGCGCGGGTGAGACGGTCGGCCACCCCGGGATCCGTGCCCCCCGGCCCGCGGCCCGTCCCCTGCCGGACTCCGCCCGCGACCG # Right flank : GGCACCCTCACCTCGGCCCTCACCTCGGCCCTCACGAACGGCGTGACCGCCGGTGCCCCGCCCGCGGCCGAGCTCGCCCGCCGCCGGCCGCCTCGGGGTGCGTCTCGCCCTCGGCGCCCACACCGTCCTGCCCGCATCGCCGTTCCGATGTGACGGATTCACCGGACCAGGTGTCCGACTTGCGACGTACACACCCCTTCGCACCCCTCGGAAGGCGCCCTTCAGGGCGCGCTATTGAAAATGAGTGTCATCATCGTATAGAAGTACTGGGTGCTCACCTCACAACAGCTGCCGGAGCGCCCGATGGCCGGAGTCCGGCCCTTGGCGCTCACCGCACTCCGGCATCCCACCGTCTCCACGCTCCTGGCGGATCACCGCGCCCTGCTGGCCGACCTCCTGGACGGCCTGGGGTCACCGCTGCACATCGTGCTGCCCGAGATCTTCGAGGAGAACGTCGCCGGACTCCGGCAGGCGTTCGCCGAGGCGGGTGCCACCGCCGA # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGACGCGCCCGCCGGGACGGCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [2,0] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.50,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //