Array 1 6436-5339 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QYEA01000003.1 Listeria monocytogenes strain N13-1158 NODE_3_length_510054_cov_67.5766, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
      6435	    36	 100.0	    30	....................................	AAGCATCCAAGAGAGAGCTTCTTCGTCATT 	
      6369	    36	 100.0	    31	....................................	TAAAAGAGGTCACGTACAGTCCAGCTCTAGA	
      6302	    36	 100.0	    30	....................................	AAGCATAGCACCTGTAATTCTACTTGAATC 	
      6236	    36	 100.0	    30	....................................	AACAAACGCGGGACACTCTCAAAAAGTGGA 	
      6170	    36	 100.0	    30	....................................	CTAAATTCTTGTTGCGGGATGTTGTAGACG 	
      6104	    36	 100.0	    30	....................................	ATTGACTAAGTCACCCTCAATTAATTCATT 	
      6038	    36	 100.0	    30	....................................	CTACAGGTGAATTCTTCTGCTATGAAATCA 	
      5972	    36	 100.0	    30	....................................	CTAATTTGAGATTTTATAGTAAGCCTTCTT 	
      5906	    36	 100.0	    30	....................................	CTTTGTATTTAGGTGGATTGTAAAGGTAGA 	
      5840	    36	 100.0	    30	....................................	TTTGAGCGCTTGTTTTAATTTATTCATCGC 	
      5774	    36	 100.0	    30	....................................	TCCGCACCTTCAATTTAATTTTAAAGGTTA 	
      5708	    36	 100.0	    31	....................................	TGCTAGGTTACTCAGAAGCTTACACATTCGA	
      5641	    36	 100.0	    30	....................................	CGTTGGCGCGTAAGCCATCGCCGTTCTTGT 	
      5575	    36	 100.0	    30	....................................	GTAAGTAAAACCGGACGACTCGATGTGTCG 	
      5509	    36	 100.0	    30	....................................	AAAAGGGGTGTGCTTGAAATGGGTGTCTCC 	
      5443	    36	 100.0	    30	....................................	AGACAAAAAAGGCGAGGTACATTGGACGAA 	
      5377	    36	  86.1	     0	.............A.....C.....A.A.......G	|                              	C,A,T [5342,5345,5350]
==========	======	======	======	====================================	===============================	==================
        17	    36	  99.2	    30	GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	                               	       

# Left flank :   GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAATTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGGCGGTATATCTCTTTATATCAAGTCAAAGTTCTATTTATTGAACCTAGAAAGATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG
# Right flank :  ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAATAATTAAAAAAGAAAATCGATATAACTTTTAGCACCATTCG

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:69.44%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.80,-1.30] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,4.87   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
//