Array 1 2-873 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHQS01000024.1 Bifidobacterium longum subsp. longum strain MCC10041 contig0024, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 2 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 66 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 130 36 100.0 28 .................................... CTGTGGCTTCTTCACCTTCGGCACCTTC 194 36 100.0 29 .................................... CCAAGTGTGGGCCGAACTCAACAACTAAG 259 36 100.0 29 .................................... CGCCTCGCCGCCGCACGAGAACGAGTCAA 324 36 100.0 28 .................................... TATGGTGTAGCCAACAACAAAAACAAAC 388 36 100.0 29 .................................... CCCTTGCGCGTACTGTGCTTGTAGGTGGC 453 36 100.0 28 .................................... TATGGTGTAGCCAACAACAAAAACAAAC 517 36 100.0 28 .................................... CGGGTAACAAGGTGGACATGCTCATTGA 581 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 646 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 710 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 774 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 838 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 14 36 99.0 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : AC # Right flank : TGCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTACGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCAACTGAATATCTTTAAACTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 4503-5819 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHQS01000044.1 Bifidobacterium longum subsp. longum strain MCC10041 contig0044, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 4503 36 100.0 28 .................................... ACAAGGAACAGCGCACGGTGGACTGGAA 4567 36 100.0 28 .................................... AGTGGTCGGCTCCGGATAAATGCGAGCT 4631 36 100.0 28 .................................... AGAGCACGCGCGGTGTCTTCGGACGTTT 4695 36 100.0 28 .................................... CCGTGACGATCACGCCGACCATGGACGG 4759 36 100.0 28 .................................... TTCCATGATTCCGGGATGTAGGCCACGA 4823 36 100.0 28 .................................... ACTATGGATATCGACATGAAAATCCTCC 4887 36 100.0 28 .................................... CTTCGAGGTTCCGGTAATGGCTGGGCTT 4951 36 100.0 28 .................................... AGCGTGAACGCAAGGCCATCGCATATGT 5015 36 100.0 28 .................................... GTAAAGGGTGGCGTTTTGTCGAAGTCAC 5079 36 100.0 28 .................................... GGTCAAGTAGGGTCATGCGGGGTCAAGT 5143 36 100.0 28 .................................... GGTTGGTTCGATGATGCAACACCTATAC 5207 36 100.0 28 .................................... CTTCCTTTCCATTATTGAAAATCTCCAG 5271 36 100.0 28 .................................... TTATCAATGAAGTTGCGGACGATGTTCG 5335 36 100.0 28 .................................... CGCGAACTTAACGGGGAGCCGGCGTTCC 5399 36 100.0 29 .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 5464 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 5529 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 5594 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 5658 36 100.0 29 .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 5723 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 5787 33 91.7 0 .................................--- | ========== ====== ====== ====== ==================================== ============================= ================== 21 36 99.6 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : | # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //