Array 1 15162-15855 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAAAMS010000020.1 Mannheimia haemolytica strain lb002 scaffold20, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	================================	===================================	==================
     15162	    32	 100.0	    35	................................	TGCATTAAACGGGCGTAGATCTTCAATTTTCTCGC	
     15229	    32	 100.0	    35	................................	ATTTCTCAGGGTAAAATCCAAGTAAATGTACCGAA	
     15296	    32	 100.0	    35	................................	ATCTTGGATAGTAGATTCTTCAACTGTGTCTTGAA	
     15363	    32	 100.0	    33	................................	ATTTTTAGGTTATCCCCGAGCAAACATTGCTTG  	
     15428	    32	 100.0	    33	................................	CCTCTAAAATCATAACTTTCGTTAAAGCATGCG  	
     15493	    32	 100.0	    34	................................	CTCATCATCGCTCTTGCCAGCTCTAAATGGACTT 	
     15559	    32	 100.0	    35	................................	TCACAAATCCACCTGTAGTAGTTAAGTTTGCAATT	
     15626	    32	 100.0	    34	................................	AAATTGATTATGACGACACCTGTTGATACCTCAA 	
     15692	    32	 100.0	    34	................................	TTTATCAAATCGTGCCCAATATCCACACTCAGGG 	
     15758	    32	 100.0	    34	................................	CAAATGTGGTTATGGCTTTGATGCGGTAGAGTGT 	
     15824	    32	  96.9	     0	.......................T........	|                                  	
==========	======	======	======	================================	===================================	==================
        11	    32	  99.7	    34	GCAGCCACCTACGCGTGGCTGTGAATTGAAAC	                                   	       

# Left flank :   ATCGGGAAGAAATGCTGGCTTTAATTTTAGATCGCAGTGATGATAATGCTCCGAATCAGGCGGCGCGTTTTACTGAGCATGTTCGCGCATTAAAAGAGCAAACATTGAATAAGGAAGAAAGAAATGATGTTTTGGAAACGTTTACTGTTGATTCGCCAATTCCGTATTCTATTGAATTATTGTTAGCTCGTTTAGATAAAGATAATTCTGAGATGGTACCTAAAGAGGGAGGTTCAGGAACAAAGCAAGGTCCTTGGTATAGTAAGTTGTCTAGGTTTATGGGAAGGATGAAAGCCAAAATAGATGACAGACGTTGCGGTTTTATGTTCCAACCGCCAGTAGAGTGCAACAGCTATGGGTGGCTGGAAAATATGTTGTCAAAACTGTTTTCTGCTTCTGAGAGCGAAAAAGGGATAAAAATTATTGATTTTTCGGAAGTCCCGTCGGATGTTTTACCGATTGTTACTTTGCAAATAAAAATACCAATGCCAAAACATTAC
# Right flank :  CGGTGTACCCACAAATCCTATGTTTTCGCCATTGGCTGCTACCTTCGCATCAATATATATTGAAATATCAATAGCAAATTTGTATGTTGTTAATTAGACTGATTGCATCTGCTATGTATCATAGTAATGACGAAAATATTCTATTTTGCAAAAAATAATCAGAAATTACCCGCTTGTTCGAACTGAGTTTTTGTTTTCTAAGATGTGAAATGATACACTTTAGATAGTTTTAAAATATAGAGACAGTAAGATGAGTAGTACGGAATTATTAGTGAATGTTACCCCAAGCGAAACAAGGGTAGCGTTGGTAGAAAACGGAATATTGAAAGAATTACATATTGAGCGGGAAGCTAAACGCGGGATTGTTGGTAATATTTATAAGGGAAGGGTGACAAGGGTATTACCAGGTATGCAATCTGCTTTTGTGGATATCGGCTTGGAGAAGGCTGCTTTTTTGCACGCTTCTGACATCGTTTCGCATACGGAATGTGTTGATGAAA

# Questionable array : NO	 Score: 9.25
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCAGCCACCTACGCGTGGCTGTGAATTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     F [8,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GCAGCCACCTCCGCGTGGCTGTGAGTTGAAAC with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-1.40,-2.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.78,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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