Array 1 11504-13201 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPFL01000053.1 Neisseria sp. 10009 Scaffold47_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 11504 33 97.0 35 G................................ CCGACGCCAATCGGGAGAGCAAGAACTAGCAGGTT 11572 33 97.0 33 G................................ ATTTCTGTTTCTTTCGGTTGGTTTGCTGTTTTG 11638 33 100.0 35 ................................. AATCCAACACGCTCCACCAAAACACGCGGCCGATA 11706 33 100.0 32 ................................. ATCTTGGTTTCCTTTTAAGTGGTAAAAGCCTT 11771 33 100.0 33 ................................. TTTGTCGGATGCTTATACTGCTTATGGCTTCCG 11837 33 100.0 33 ................................. TACGATAAATCCTATGCTCAACCATTGTGCCTA 11903 33 100.0 35 ................................. TCATTATCACCATTGAATAACGATTTTCCGTCATT 11971 33 100.0 36 ................................. CGTGTGAAATATCTATACCGCTTGCCCGGTAACAAA 12040 33 97.0 34 G................................ TCAGTTGGCCGTAACGCTTACCCAGCACCGACCC 12107 33 100.0 33 ................................. TGTTTAAGGCGGATGTCCCGGACAACTGGGACA 12173 33 97.0 34 G................................ ATACAGATAACCGTGCGATTTCAGCGGTGTTTTC 12240 33 100.0 34 ................................. AAGTCCATGGCCTTAGCCATTAACATCATGCTCA 12307 33 97.0 34 T................................ CATATTTAAGCGCCAGCCATGATTTTCGCCTGCG 12374 33 97.0 35 C................................ AGTAAAAACTAAATAAAATAAGAAACAAACTGGAG 12442 33 97.0 35 G................................ AACGTCAAATCCCATGCATCGGCTGCGGGCGGATA 12510 33 100.0 33 ................................. GTGTGTATTATTACACACATGGCAGACGTGCCA 12576 33 97.0 33 T................................ CAGCCAAAACATAGTCTATCCTTTAAGGCCGCC 12642 33 97.0 33 T................................ TATTCAAACCGCCCCGTCTGAAGCGGTTTAGTA 12708 33 100.0 33 ................................. CGTGCGTACCGTTTCAGGGCGTGCAATCCAATG 12774 33 97.0 33 C................................ TTTGAAAAACGGCACTTCCACGTCATCATCGGC 12840 33 97.0 32 C................................ GCTGCCAGCCGCCTTGTGCAAATCGTTCAGGC 12905 33 97.0 33 T................................ TTTTGGAGAGAAAGTAAGCCGCAGACTGGAAGA 12971 33 100.0 34 ................................. AAAGAAATCCACCTTGCGGCAGGCAACGGCTTTT 13038 33 97.0 33 C................................ TTCATAATTCAAAAGGACATATGCCAAATTCCC 13104 33 97.0 32 C................................ AACGCCTGCACCGCCTCATGCTCGTTGGCCGA 13169 33 97.0 0 C................................ | ========== ====== ====== ====== ================================= ==================================== ================== 26 33 98.3 34 ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : AAACAAGGGGAAATGTTGTGCTGATGCTGATTACTTACGATATTGCCCTGGACGACCCGCAAGGCCAAGCGCGCCTGCGCCGTATCGCCAAACATTGTTTGGACTACGGCGTGCGCGTGCAATATTCGGTGTTTGAGTGCGATATTGCGCCCGATCAATGGGTTGTTTTGAAAGAAAAATTGTTGAAAACCTATAACCCCGAAACCGACAGCCTGCGCTTTTACCACTTGGGCAGCAAATGGCGGCGCAAGGTGGAGCACCACGGCGCAAAAGCGGCGGTGGATGTGTTTCAAGACACGCTGATCGTGTGAATCGCCAACCTGCGGTGCTCATCAAAACGCGGGCAGGTTGGCGAAACGGGAAGGTTCTTTAACAATCAGGAACTTAGCAAAGTATGTATGGCGGGAAAAGGCTGTGCTATACTCGCTTTGCGCCTTTGTCGGCGACTTTGGCGATTTAGGGCTGTAGAAGCCTTGAGTGGCAAGGGTTTCCGAGGAGGC # Right flank : TTATGGTAAAGGGTGGCCGAAA # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 20-384 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPFL01000060.1 Neisseria sp. 10009 Scaffold54_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 20 33 97.0 34 C................................ TTATGGTAAAGGGTGGCCGAAAATGAATCGCATG 87 33 97.0 33 T................................ CAGTCGCGGCCACTTGGCAGGTCGCCCTGATTG 153 33 100.0 33 ................................. AGTGTGCCGAAAGTAAGTGCCGGTAGCGGAATT 219 33 97.0 33 G................................ CAATCACTTATCCCCAAAGCGGCTTTGCTGTAA 285 33 100.0 34 ................................. CATCTCCGCAAAATTGCGTTTATGGAAATAATCA 352 33 93.9 0 G...............................T | ========== ====== ====== ====== ================================= ================================== ================== 6 33 97.5 34 ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : CCTCATGCTCGTTGGCCGAC # Right flank : TGTTCCCGGAGCAAGTCAGATGATGACTAATATCTTTCCGTCGCTTTAGGATGTCTATATGTGGCAATAGCCACTAAACCCCACACGCTAAATTAACGAAAGCAACCGTAAAAAGCGGTGTATTACGATGTCTCTTTGTTATTGAGTTAATCTAAGTTTGAACCAAGTTAAAGTATGCTAAAAAATCATGCCGTCTGAACGTGATTTTGGTATATGATTTAAAAATGAATGCCATTTGATTTCAGGAGAAAAATCCATGTTCCAATTTGCCCATCCCCAACAAACTCTGCTGCGCCAAGCGGTGACTGAGGCTTACCGCCGCGATGAAGTCGAAGCGGTGAACGATATGCTGCAGCAGGCGCAGATGACGGATGAGGAGCGTCGTGCTGCCGATGATTTGGCGCGCCGTTTGGTGACGCAGGTGCGGGCGAGCCGTACCAAAGCGAGCGGTGTGGATGCGCTGATGCATGAATTTTCGTTGTCGAGCGAAGAGGGTGTGG # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [11.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //