Array 1 982606-983102 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXEU010000002.1 Bifidobacterium pseudocatenulatum strain YIT12203 YIT12203_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 982606 36 100.0 30 .................................... CATCACGAGTCTTCCGCGACCAGGTCGGCG 982672 36 100.0 30 .................................... AGGTCGGAGACGACAAGCTCCCGTTCGTGA 982738 36 100.0 30 .................................... AGGTCGGAGACGACAAGCTCCCGTTCGTGA 982804 36 100.0 30 .................................... GCATTGCCGACCTTATTCAACCGTGTGACA 982870 36 100.0 29 .................................... CCTCGATGTGACCGTCCGCGAAAACCTTC 982935 36 100.0 30 .................................... ACACGACCGGCTGGCAGTATTCGGACGTGA 983001 36 100.0 30 .................................... AACACTGATTCCACCAAGAGCGCACAAGCT 983067 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTGGTCTAAGTCTTTGATCTGACAGGCATCTGAAAC # Left flank : TTCCCCGCGCCTAGAGGGGACGCCGGTGCGCTCCTCCTCGAGCCGGTCCGCGTACCACGACAGCAACGCGCCCTTGCTGGGATAGCCAAGCTCGCGGATCACGTCGGCGGGCGCAGCGCTCGTATTTGACGTACAGGTCCACGGCCCTGTCACGCTGCTCCCTGCTGTACTTCGCCATAAGGGGTTTTCCTCCCGGTCGGGGAGTCCAAGAAAACGTCATCACCTCGTTCGGACTGGATTGACACGCCATTTTGGACTACTTCAATTTAACAAAACACATTGCGCATGGATAACGTCCTCTTCGCCCCTAAGACGGTCGAGAAAATTCTGATAATCGTTGATACCCATGAGCACGTAGGACAGCGTTCCGTTTGACGACAAGGACCGGCGCACGGTCGGCCTTAGACAGCACCGTAGCGGTGCGTCCATTACTGAGTTCGCCGACTGGCACAAGATCCTCAAGCACAAACTCTGTCAAGGTCACATCCACTTTCCCTCCG # Right flank : CCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCTAAGTCTTTGATCTGACAGGCATCTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 28-459 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXEU010000003.1 Bifidobacterium pseudocatenulatum strain YIT12203 YIT12203_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 28 36 100.0 30 .................................... ACCATTCTGAGAGGACTGCCCGGCTCGGGA 94 36 100.0 30 .................................... CGGGGCTGTGGTATTGGTTAATACGGGTGG 160 36 100.0 30 .................................... CTACACGGTGTTCGGCATCTCGAAACGTTC 226 36 100.0 30 .................................... TATCCGCTCCAGTCGTCCGTGTTGGACTCG 292 36 100.0 30 .................................... CCAGTTGGAGCTACTGTTCGGGAGGGCGTT 358 36 100.0 30 .................................... ATCCGATTCACAAGGATTATGACATCCTTG 424 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GTGGTCTAAGTCTTTGATCTGACAGGCATCTGAAAC # Left flank : TCACGTCGTCGCGGTCGCCGGCCTGTTG # Right flank : CCGATAGCCTTGGAGAATCCTGAACGTTCTATGAGAACTGAACATAATCTCCATCGATATACCGACTTCTTCCCTCTGTCAAAAGGACTTTTTTGTCGCAGCATTCCAGGTCCAGAAGCTGCATATGGTGTCTTAATAATTCTCGATGCAAATAAAGTAATTGGCCATTATCACAATATTGAGTTATATGAAGCATCACAAGCATCCTGCCCTCGGCAAGAGCGCCGGCAGTATCAACTACCAGTTGAATTTTATCATAAAGAGAACCCAGAGAACTGGTATCAACACGCGGTTTAGCCATTGCTATCATTGACTTTATATCAGCTTCATCAAGAATACTCAGAGGCAAATTCTCTCTCCATATTTCTTCTTGAATAATCGACTTTATCTCAGTTTGTAACAACAATAATCTACTCAATTCTTCAGGATTAAATCCGTCATTTAACTTCTTAACTGCAGCCTTTTGAAACAAAGCATCATAATCTAGTACTCCTGCGCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCTAAGTCTTTGATCTGACAGGCATCTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [13.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 162374-162603 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXEU010000001.1 Bifidobacterium pseudocatenulatum strain YIT12203 YIT12203_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================ ================== 162374 24 100.0 27 ........................ TCCACGGTGCTTTTCCGGGTGTTTGTC 162425 24 100.0 27 ........................ TCCGGAGGTTCATTTTTGGTCTTTAAA 162476 24 87.5 27 ......A.....CA.......... CGCACGGCATCTATTTCAGTCTACGGA 162527 24 100.0 28 ........................ CTTAGGTGCTTATTTTGAGCCGCTTGTG 162579 24 83.3 0 C...........CA.......G.. | C [162602] ========== ====== ====== ====== ======================== ============================ ================== 5 24 94.2 28 TGTCCGTTTCTGGTGAATCGGACA # Left flank : GTATGGCGGTCGAGCAGGGCCGCGCGGATTTCTTCGCGGCTGACGAGCGTGGCCGGGTCGGGTTGGTTGTCGAAAGCGTGCTGGCGGGCGTCGATCTGCGCCTGCGATGCGGATGGTTCAAAAGTCATGGTTGTTCTCGTATTCTCGTTTTCCGTTCGTGCGTTGTTTTTGCCGGGTTGGTTGTGTTTTGTATGTTCTTGCGATTGTTACGCGTGCATTGCGCCGGTCGTAATCGTAAGAAACTTTGAAAGTGGTTCAGCCGCCCTGCACGAACGTGACGATTTCCAACGTATCGGTGCCCTTGAGCTGCGTCTGCGCACGCTGGGTGCGAGGCACGATCTCACCATTGAGCTCGACAGCCACGCGGTCGGCGCGCAGGCCCTTGCTTTCGATCAGTTCGGCCACGGTGATTGGCGTGGCGACGTTCTCTTCCTTACCGTTGATGATCATTGCGGTTCCCTTCTGTGTCTGTCGTGACACATGCTTTCCTGCACTCCGGA # Right flank : CTCAAGGTTGGTACGAAAAAAGGGTCGCCGAAGGAACCGTACCCTATGAGGTGGTGCGCCCCTCCGTGACCCTAATCACGCGATATTCGGTTATCGCGAACGGAAGATGAGATACGCCTTGCGGCGTGAACAACCCGTCTCCTTACGGCGGCATTACCCGCATCAAGTCCTCGGTCGAAGCTCCGTGAGCTCCCTCTCAGCCTTTCGGCTCCCGTTCGGTTGTGCCTTCATCTTCGCGCACGCGCCCGACAAGCTTGCGCCGGTTCACGTTGGGTTAGTCTTGAGATGAACGTGTACGAATCGGCTATGTTCTTGGAAGGAAGGGGAAGATGATGATGAACGGTGAGTTGGCAGGATTTACGATTCCTCGGCTTGGTATGGGAACGATGGCTTTGGCGATTGAGGGGCGTCCGGATCGCGATACCGCGATTCGTACGATTCATGCCGGTTTGGACGCGGGTGTCCGCTATTTGGACACGGCTTGGTCATATTATTTGCCG # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:-0.10, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCCGTTTCTGGTGAATCGGACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //