Array 1 1250-2439 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMXF01000106.1 Thauera phenylacetica B4P Cont106, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 1250 36 100.0 36 .................................... TATCTGGCTTTGTCGGCGACGCGCTCGCCGCTCAGG 1322 36 100.0 35 .................................... ATGGTGTAGAAGCGGGCGCGGGGGCTGCCGACGGT 1393 36 100.0 36 .................................... GTGATCTGCAGCCAAAGTTGTAGGTCTTTCAGTTCC 1465 36 100.0 36 .................................... CGGATGGCCTCGGCGATGGCGAAAGCGGCCTCGGCG 1537 36 100.0 35 .................................... TCAAACGGCGACCCCTTCGACACCCGTGCCGAGGC 1608 36 100.0 38 .................................... GGCGCGCAGGGCGCGAAGCAGATCAAGTACGCGACGGC 1682 36 100.0 35 .................................... TACTGGCAGGGCTGGTCCTTGATTGCGATCGCGGA 1753 36 100.0 38 .................................... GCCGCAGGACAGGTGAGCAAGTACATCCACCGCGGGCG 1827 36 100.0 36 .................................... ACGAGGTCGACGTTGTAGTCGGTGCCCGCGACATAG 1899 36 100.0 36 .................................... TCGATCGCTACGGTCCCCTGCTCACCGAGGCGCAGC 1971 36 100.0 37 .................................... GGCGTAGGCGACGAACGCCGCCTGCAGCTCGCGCGGC 2044 36 100.0 37 .................................... ATCGGCGACGCCTCGGTCCGGAATACAGCCTCATGCG 2117 36 100.0 37 .................................... GCCGAGCTGCGCGACCACTACGAGGCCACGCTGGCCG 2190 36 100.0 35 .................................... CCAACCTTCCCAACCTTCCCAGCCTCGCCCCTCGC 2261 36 100.0 35 .................................... GTCCAGGTGTTGCCGATCACCATTTCCGCGAGCTC 2332 36 100.0 36 .................................... TCCCTCGCGTAGCGCTCATACATCCACGCCATGCCG 2404 36 72.2 0 .C....TT....A....C....C.....GCC...A. | ========== ====== ====== ====== ==================================== ====================================== ================== 17 36 98.4 36 GTCATCCACGGCGATCAGCCGTGGCCTCATTGAAGC # Left flank : CGCTGCCCCCGATCACAGTGGCTGCAGATCAGCACTGCCGCGCGGCACGCGGCACAGAGATAGCGTCGTCCGGTCGACTCCATGGGCCTTGAGGCCCGTGGGAGACTCGACGCCAGCGCCCACTTCGTGAAAGACTACGGGCGCAACGACCGCGCAGCCTTGCGCGGGTGTGGGGCGCGACACTGGGGATGACTTGGCGGTTTGAGCCGGTGTCGCGCCTGCGTTGCCACAGGCCGAGCCCGATTGTGCGCGCATCGGCCACTCGGGTGCCAAACGCCCTCCCTCCCGATTGTACGAACACCCCGCCCGCCATCGGCGCGCCGGGGTCAGGGGCGTTTCCAGTTGCCCTACGGGCGCCTTCCAACGCCCCTGACCCCATCAAGCAAACAGCCGCTATCCGCTCACCAGATCAAGGTCATGCTGTGCCGTGCCGGCGGTGGACGCCGGATTTGTGCGGGAATCGACCGCCGTTAACACTTGGCGTAGGGGATTCTCGACGT # Right flank : CCCCTCGCCCGCAGAGCCATCCCGGAGATTTTTCACCCAAGCCTCTTGAACCGCCCCCGGCCGCCCCCAAGTACCCGTCTGTTTCGCATTACAACACGGAGCCAACCGACATGCAGGACCCGAACCAGGCCAGCCAGAACCCCACCGACCAGCCGGCGGAGCAGGCCGCGCAGGGCGGCGCGCAGCAGCCCGCGCAGAGCGGCCCGGAGCTCGACCTCCAGGCCGCCGCCGCGGCGGCCGACACCGCGCCGGAGAACGGCATCGACAGCATGCCGAGCCTCGAGGAGGTGCTGCGCCAGGCCGAGCTGAAGGCCGCCGAGCACCACGACGCCTGGCTGCGTGCCAAGGCCGAGACCGAGAACCTGCGCCGGCGCGCGCAGGACGACATCGCCAAGGCGTCGAAATTCGCTGCCGAGAAGTTCGCCACCGCGATGCTGCCGGTCAAGGACAGCCTGGAGGCCGCGCTCGCGACCGAGAACCAGACCGTGGACAAGCTGCGC # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATCCACGGCGATCAGCCGTGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.80,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 9626-8254 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMXF01000037.1 Thauera phenylacetica B4P Cont37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 9625 37 100.0 32 ..................................... TTCAGCTGCTTTAGTTCTTGCTCTTGATTTAG 9556 37 100.0 31 ..................................... GAGATCAGCTTTTCCTTATCTTCTTTGCTCT 9488 37 100.0 33 ..................................... TCCCTTGCTTTGCGGTACATCGCAATGCTTTCG 9418 37 100.0 34 ..................................... CTACCGGGGGTAGTGGGTCTGCGATAGCTTTTCG 9347 37 100.0 33 ..................................... CGAGTGGCGTTCACGTTTGCGCGGGCGGTGTCT 9277 37 100.0 35 ..................................... GCGGTTCTTGTCGTCGTTCAGGCGCTGAAGGGCTT 9205 37 100.0 32 ..................................... CCCGCAGCTTGCGGGCTTCTTCGATCCTCATT 9136 37 100.0 34 ..................................... TTTCAAATCCCTTTTCATTCATGTAACTTTCGCC 9065 37 100.0 34 ..................................... CCTTTGTCGTTCGATTAATTTGTCACGAGACGAG 8994 37 100.0 34 ..................................... TCCCGACATACCGGACCTGATCGATGGAAACGCG 8923 37 100.0 32 ..................................... GGCCTGTCGGCGTTGATCGAACGCGCGAAAAT 8854 37 100.0 33 ..................................... CCGCCGATGTGAAACGGGTTGTCTGGCGATTCA 8784 37 100.0 34 ..................................... CCGCTGCCGCTATTCTTCCTGGAAGCGGGGGGTC 8713 37 100.0 33 ..................................... ACTTCTTTACCCATGATCTCGCTCCTTCGTTGT 8643 37 100.0 34 ..................................... GCGCGCGCGAAGCGAAGAGAGCCGAAAGCAAGCA 8572 37 100.0 35 ..................................... TGAGTGACGCCCGCGCATCCGCCGTTACCGCCCGC 8500 37 100.0 34 ..................................... TGAAAGATTTCAGCCCACTGAGCGCTTCGGATTT 8429 37 100.0 33 ..................................... CAATTACAAGTATCGCCATGCCAGTCCAAAGAG 8359 37 100.0 32 ..................................... TCCCAAGGCTCAGCTGGGATGGCAATAGCAGC 8290 37 94.6 0 ...........G........................G | ========== ====== ====== ====== ===================================== =================================== ================== 20 37 99.7 33 GTCCGGACTGATGCCCTGATATCAAAGGGATTGAGAC # Left flank : GCTGCACCACCTTGGCGACCTCAAGCGCCACCTCGCACGGGAGGTCGAGACATGGCACTGAACACGCCGCGCGGCTGGCTCATCACCTACGACATCACCAACCCCAAGCGCCTCGTCCGCCTGCACCGCTTCCTGGTCAGGCAGGCCACGCCGGTGCAGTACTCGGTCTTCCATTTCGAGGGCAGCGCCGCGCAGATGGGTCGCCTGATGGCCGACATCGAAACCCGCATCGACGCCGGCACTGACGACGTCCGCGCCTATCAACTGCCGGAACACCTGAGCATCGACACCATCGGCCGCGGCAGCCTGCCCGGCGACACCTTCCTGCTGTCGCCCACCTCGCCAGCCCTGCAAGCGCTGCTTCAGGCCGCGGGCCGGTGATACCATCTCGGCACTGAACCGCGCAGACACAACCGTGACAATCCGCTCTCCCGGGTCCCATCCTTATTGGGAAACCCCTCTACAAGAAGCTGATTGCAAGGTCGTTTTTCGTGCGAGCA # Right flank : GTTGCCGCTCCCGCCAACGCATGGGGTTTCCGTGCGTTGCAGCGCACGACCACGGCGCGGGGCGGTGCGGCACCTCGAAGGCCGCGCCGTATACCAGCGCACCCGTGCGCGCTACCAGACGACCAACATCCGGTACAGGAAGTAGCCGAGCGCCATGTAGAGCGGCACGGCGACGATGACGAAGACCACGAGGTAGACCACGCCGATCAGGAGAGGCAGAAGCACCGCGACAAGTCCGCTCCAAAGCAGCTCGAGCAGGGCCAGCAGCAACGCGACCGCGCCGCGACGAAGCCAGCCGAGCCTCCGGCGCCAACCGGTGGTGGGCCGCCCATCCAGTTGGGCCTTGGCGTCGAGCAAGCTCTCCCTGGCGCGGAAGGTTTCCATGCGCAGCATGAAACCGGTCCAGGCTGCGTCGGCCAGGAGGCTGCTGGTGCCTCGACTGCGGCGCACCGCGCCCAGCAAGCCCGCGGGCGCCTGAGCTCGGCGATTCGATCTGTTAC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGGACTGATGCCCTGATATCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 21090-22719 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMXF01000054.1 Thauera phenylacetica B4P Cont54, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 21090 36 100.0 37 .................................... TCGATGTTCTCGGCGATGTTCGAGAAGGTCTTGCCGC 21163 36 100.0 37 .................................... AGGACAACGGGGCCGTAGTAGCTCCCGTTCTCCTTCG 21236 36 100.0 36 .................................... AAGGACATCACCGTGAAACCCGAACGCAAACAACGC 21308 36 100.0 36 .................................... GTGCCGGCGCTTGAGGCTGCTACGGCATTCACGGTG 21380 36 100.0 36 .................................... ACACCGCTTTTCGCCGAGATGGGCTACGCGGCCGCA 21452 36 100.0 35 .................................... TTGACCGAAGATAGCCGGCCTGCGCGATAGGTCGG 21523 36 100.0 38 .................................... CGCCTCTCCACCCGCGTCGTCATCAAGAACCTCGGCAA 21597 36 100.0 37 .................................... GGCTACGAGATCAAGCGCGAACTGATTCAGGAGGTGG 21670 36 100.0 35 .................................... CGGCGCATCCAGTCTTTGCCTACTCGCTTGGGCAC 21741 36 100.0 35 .................................... ACTTCGCTCGGCGATGCGATCGACGGGGCGATGGC 21812 36 100.0 36 .................................... AATCCGCACGGGGACGATTTCCCAGCCCAGGGCGGC 21884 36 100.0 36 .................................... GTGAGTGGACCGGGTGGGGTGGTTAGAAAATCCCTC 21956 36 100.0 36 .................................... AGCACCATGCGGGTCTTGAGCTCGACGTTGTAGCTG 22028 36 100.0 35 .................................... CGTCGAGATGCTGCCGTGGTATGCGGAGCTGGCAG 22099 36 100.0 40 .................................... CCGCATCGGGCGCGGTTGTGCTTCTTGCGGGACATCAGTG 22175 36 100.0 37 .................................... TCGGCGGGCAGCGCCTTGATGGCGTTGAGCACCTGCG 22248 36 100.0 36 .................................... ATGTCGGCGATGAGGGCCTCGTGGCCCGGGAGGGCC 22320 36 100.0 36 .................................... ACGATCACATCGCGGTTCTCGGCCCCGATGGCCGGC 22392 36 100.0 39 .................................... AACGTTTGCTCGCTTACGCCAAAGATTCCGGCCATTTCC 22467 36 100.0 37 .................................... ATGCGCTTGATCGAGAGGTCGCGCAGGGCGGCGAGGT 22540 36 100.0 36 .................................... AGGGCGAAGCCGCTCGTGTCGAACTCGAACACCGGC 22612 36 100.0 36 .................................... GTGCTGGGCTCATGGCGTTACCCCAGCTTGGCGACT 22684 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 23 36 100.0 36 GTCATCCACGGCGATCAGCCGTGGCCTCATTGAAGC # Left flank : ACATCGTGACCTACGACATCCGCGACCCGAAGCGCTGGCGGCGCATCTTCAGGATCATGAACGGCTATGGAGAATGGCTTCAGCTCTCCGTCTTCCAGTGCCGGATGAACCGGCGACGCCATGCTGAACTGATCGCGCTGCTCGACGGCTTGATCCATCATGCCGACGATCACGTCGTCCTCATGGACGTGGGCCCGGCCGACAAGGTCGCACCTCACATCACCAGCCTGGGCCGCAACTTTACGCCGATCGAACGCGCCTCCGTCATCGTCTGACGCCTCCGCGGCCGCGTTCCCTCCCGCCGAGGACCCGCGAGCGCTCCAGTGCCGCGCTTTGCCTCGGCCAGCGCTCGCGGCATCATAGGAGACTGAAAACATGGAGCATTTCCCCCAGGTCCCGGGTAGTATTCGGCTTGACTCGGACGCGTTGGGACGTATGCACACACAGCCCTCGCAAAAGGCGTCAGATCGCCAGCGGCAACAGGCGATTTCGCAAGGGCT # Right flank : GTTGCTCAAGCCTTGGTGTTGCCGGCTCCCTGATTCCGCACAAATCTGGCGTCGTTAAACGGCGTCGTCGAGTGGGCGCCGGCGGCGCCGTAAACGGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATCCACGGCGATCAGCCGTGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.80,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //