Array 1 135805-136550 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASTU010000008.1 Listeria immobilis strain FSL L7-1578 NODE_8_length_144236_cov_20.242496, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 135805 29 96.6 39 A............................ ACAAAAATAAGGTGATTGTTGGGCTCGATTTTGGCAATC 135873 29 100.0 35 ............................. TCTTTCACGCTAAATTTAACCGAGGAAGTGTTCAA 135937 29 96.6 35 .........................G... ATATTTTTTCATGTTTTATATTTGGATATTTTTTA 136001 29 100.0 37 ............................. AAGGGATACACTGGTCAATTTAAACAAGAAGGTATTA 136067 29 93.1 36 ........................CG... TTCGGATTATGGCATACCTCTTGACGCGCCCGTTTC 136132 29 100.0 37 ............................. ACATTTTACTAATATAACAATTCTTCTTTTTTCTCTT 136198 29 100.0 36 ............................. TAAAGCGAATAGCTTAAGTACTATACCTACACAAAT 136263 29 100.0 37 ............................. GGCGTTGAAAAATCGGAGTCGAATTTTACATATACAA 136329 29 100.0 35 ............................. ATACAAGATGGAAAATACATACAATCAATCAAAGA 136393 29 96.6 36 ................A............ GTAGTAAGCAGTATATGAATATATTGGGTATCCTTT 136458 28 89.7 36 ........C.......A.....-...... GCAGGTTACACGATTGATACCACACCCCCGTAAAGC 136522 29 79.3 0 ............C.C.A......A...TC | ========== ====== ====== ====== ============================= ======================================= ================== 12 29 96.0 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCAACAACTTCAGCTGATATTCTACTAGAAAAGGGTGCTACAGAAGTAATTGCTTGTGCAACCCATTCAGTTATGGCTGGAGATGCAACAGAACGTTTACAAAACTCAAAAATCAAAGAAGTTATCACATCCGACTCCATCGACCTTCCAGAAGATAAACAATTTGAAAAACTAACCACCATCTCAATCTCTCGCATTCTTGGTCGAGCAATTGAAGGTGTTCAAGAAAACCGCTCATTACATCCATTGTTTTAAAATATCATTTAAAGTAGAGACACAGTGGCGTCTCTACTTTTTTTGCACACGAAAATCTGTCGACCGCTAGTAGTGCAAAAAACACGCTAGGTCGACAGAAATTTGTAATTACCTGCAGGAGAACGATTGAGACATTTTTACAGGCAATAAAGCATAGCAAACACCCTGATTCTTCCCAAAAATAAAGCCGGTCGACAAAAAGGGACTGTTGAGGTAAGATGGGAGTAAGAGGAAAATGGAGCGG # Right flank : CTGTTTAGCTCCATAACGTAGCTGTAGCGCACATTCTTAGTTAGCCTAGCTTCGATAAAGAAGTAAAAATTAGAAATAAAAGTTTTAAACTGTTTTTCCCGACTTAATGACATAAAACAATAAAAAGACAAAAAGGGGAATATATTATGAAAAAAACATTATTTTTTTTACTTTTGCTATTATTTTTACTAGCTGGTTGCGCGGCGCAGGACGAAGAATTGTCCAAAGATACAGAAATTTATAAGGGGAATGTTATAAATGCTGATTATAAAGTGCCTCAAAACTTGACGGAACTTGTATCTGCCAGTGAAGATATTGTGCAGATGAAATTAGTCCGAAATAAAAAGAGCGGCGAAGAAAACAATACAATAAGTGAAGTAGAAATAATTAAAAGTTACAAAGGTACATATAAAACAGGAAATAAAATTGATATTTCAGAGCCTTGGTTTTTAGTTGCCGGCAAATACCAAGCTGTTGAAAACTATATTGCCCTTGAAAAA # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 7774-7012 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASTU010000019.1 Listeria immobilis strain FSL L7-1578 NODE_19_length_59909_cov_21.764056, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 7773 36 100.0 30 .................................... CGGATGTTGGCTATTCGATGATGTTTTCAG 7707 36 100.0 30 .................................... TGGGACTTATAAAGGGACGTTCGATAGTAG 7641 36 100.0 30 .................................... TGTTGTATAGCATGAAATCACCCCCAGACG 7575 36 100.0 30 .................................... GCCCATCGAAACGTTATTTATGATGCAATA 7509 36 100.0 30 .................................... CGAATCTGCATGGCTCGTAAAAAATGCTGC 7443 36 100.0 30 .................................... TGAAAAAAGTACTTTTACATCGTTGAAATC 7377 36 100.0 30 .................................... AAGCAAAAGGACATTTGAGAGAAGTTGACT 7311 36 100.0 30 .................................... TCTTTGCCATACGTTTTTTCTCTGACCTGC 7245 36 100.0 30 .................................... CCGGCGTAAAATATTTAAGGCGGAAATTGA 7179 36 100.0 30 .................................... CGTATCTGGTTGATGACACGCAAAATATTA 7113 36 100.0 30 .................................... AATCATCGGGTGGTTTATCGTTTTACCAAT 7047 36 86.1 0 ..............C.........G.A..AA..... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 98.8 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : AATCAATGATTGATAAACTGACTGCGACAATTAGTGAATTGATAGGTTACGAACTATTAGAACATGAGCTTGATTTGGAAGAAGACGAAATCACGGTCATTGAATTATTTAAAGCCTTAGGAATAAAAATAGAAACGAAAAGCGATACTATTTTTGAGAAGTTAATTGAAATTGTGCAAGTTTATAAATATTTATCAAAGAAGAAACTATTAGTTTTCATTAATGTGTGTGCGTACCTTACAAAGGAAGAGTTGTTGGAATTAAAGCGGTATATTTCTTTATATCAGGTAAAAGTTTTATTTATAGAGCCTAGGAAAATAAAGGGATTTTCACAGATTATTTTAGATGCAGATTATTTTTTGGATATAGAAAATGGCATCTAAAGATTAAATGCTCTTTGAAAATAAAATATATTTAGTTCAACAGGCATTCAAAATTGAAATCTTGCTATGGATTAATGGCGCGATTACGAAATCTTAGAGAATAAAAATTTCTGCGAG # Right flank : AAACCATCTAATTTCGGTTTGTTTTTTTATTTGCCTAGTATTCCTAGATTCTCAGCATAGCGAAATTTGAAAGTGCAAGCTGGATTTAAAACGAAGGAAGTAAATCGGCAACCAACACATTCGTTAAAACTCCTGAAATGAGACCTGGCTAAAATAGCAGATGAATATTCTCACAATGTTGTTATTTCTATTTCTAAACAAGCTCATTTAGCTGTTGGCCCTCTCTTTTTTAACAAGTTTAGTTAAAATGACAAAAGTAGTTCAATTTTACGGTTAAATTAGCGTATTTTTATGCAATTTTGTGTCATCTTACAGGAGCTGGGTGTGGTATAGTGTTATAGTCAGAGCTCAACCTATGAAGCGTTTTATTACACATACTACAAGAAGCTATTCTGCCTATTTAATAGACATCTACACTTTGCGGACGCTTATTATAAATTTTCTTAGAATAATAATATAGCATAAATAAAATAAATCTTGATGAATTAGAAGTTTTAAAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //