Array 1 321209-321748 **** Predicted by CRISPRDetect 2.4 *** >NC_014926.1 Thermovibrio ammonificans HB-1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================================== ================== 321209 29 100.0 37 ............................. GTCAGGTGGTTGTAGAGGACGTAGTGGCCGTTGACGG 321275 29 100.0 36 ............................. TTCGAGAACCATCTGGTTAACCCTCTGAGGAGTTAC 321340 29 100.0 36 ............................. ACGCTTTCGAGGGCCGAAATCAGCTTCCCTGCTGCG 321405 29 100.0 37 ............................. CAAGGGTGAGAGTCTGGGGCGTGTCGTTCATTACCGG 321471 29 100.0 38 ............................. TTTTTACGAATAAGTTTTTCAAACCTGTGAGAAGCAAA 321538 29 100.0 38 ............................. CCTCGTCTGGCCGACGGGCGGCGGTTGATTAGGTTCAG 321605 29 96.6 86 .........................C... GAGTAATCGTAGTCGTAGCGGACCACGGCACCCTATAAGGGATTGTGCCTTGCTTTTTCACGAACTCGGAGTAGGCCTTCTTAACG 321720 29 79.3 0 ........C......C........ACAT. | ========== ====== ====== ====== ============================= ====================================================================================== ================== 8 29 97.0 44 GTTTGAAATGCCCTATAAGGGATTGTGAC # Left flank : CGAAGGTTACAGAACGGTTTACGCAAACTTAGGCTCCATAGACGTAAAGCCCAATCAACTTGTGAAAAGGGGTCAGGTTATAGGCACTGCCGGCACCTCGGGAGTTTGGGGAAGGAGCGGCATCTACTTCGATATCAGTAAAGTTTACAGGGGGAAAACCTACCACATCAATCCGTTAGAAGTTTTAAAGTGATTGGCAGGCTTGGCCAGAACCCCTTTTGAACCTTTCGGCAGGCCCCGTTCGGCTTACGGCCGTAGAGTTTCTCTCTGCACTTGTGGTTTGAGCTTGTTCTAAAAGGAGATTTTAAAAGATTTGCTGCATTCCATCATAAAATCTTCAGAACCAGACTTTTTCATAGGGCCACAAGGTTTTCAGACTTTATATTAGATTATCATCATAAGCTTAATGGAGGTTCGCTGCACTTGACCCCCTTTTCACGCTGTTCTAATTTTGAGATAGCAGAAGCGGCTCTTTAACTTTCCGAATACGGCAAATGTGG # Right flank : CGGGCGGCTGTGGTGAGTGGAATAGCAGGGCTTTCCCTGAGCTCGGTTTTAATGGTTGCTTAAGCCTACTCTTTCCAGAAGGAGGGGAGCAGCAGGGTCAGAACAGACATTACCTCGAGCCTTCCTAAAACCATCTCTATGGAAAGGAGCAGTTTGTCTATCGGTGAGAAAAAGGCAAAGTTCCCTGCCGGCCCTACTTTTTCGAGCCCGGGGCCCGAGCCGGTTATACAGGCAACCGATGCCGAAAACGAGGTGATTATGTCGTGGCCGGAAAGGGAAATTAGGAACCCGAACAGCAGGGTTGTAGAGAAGAATATCGAGATAAACGCCCATATGTTGTTCATCAGCGAGTAGTCTACAACTTTCTTCCCGAGGACTATCCTGTAAACCATTCGCGGGTGAAGGGTTTTCTTCATCTCGTAGTAGGTGGTTTTTGCCATTGTTACTATTCTGAACTGCTTTAACCCTCCGGCTGTAGAGCCCGAGCTTCCCCCCATAAT # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.62, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAAATGCCCTATAAGGGATTGTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 571094-571898 **** Predicted by CRISPRDetect 2.4 *** >NC_014926.1 Thermovibrio ammonificans HB-1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================= ================== 571094 35 100.0 44 ................................... GGTCTAAAGAAATCTAAAGGTTCATGAATTGCAAGTAAAGCTTT 571173 35 100.0 40 ................................... GATCCTCCATCAGCTGGGATCGTCTGTCTCTATAGTAATT 571248 35 100.0 38 ................................... GGGGGCCCTAGCCCCCGTAGTTTTCCTCGTACCAACGG 571321 35 100.0 37 ................................... AGGCCCGTAAGCTGCATAATCAGTTTTCCGTTAATAG 571393 35 100.0 42 ................................... CTAGCTGCTCGTCAGTTGCAGATTCAGGGTCTGAAAAATCAA 571470 35 100.0 45 ................................... GAGGGGCCCAGAGGGCCGCGCACCACCCAGGTTACTTTATTATTA 571550 35 100.0 45 ................................... ACATTGATGGAGCTACTGGGATAACAACTTGCTGGTCAATCACGA 571630 35 100.0 44 ................................... GTCACCGGTACTCCTCCGAGTGACCCGACCACCTCTTCCTTCTG 571709 35 100.0 42 ................................... ACTCCCGCCCTTCTCTTATCTTAATAATCTTCTCAATTTTTA 571786 35 97.1 43 ..............G.................... CTCGCACCTCCTCTTTTAGAGTTTTCGGGGGAGGAGGCGCGCC 571864 35 91.4 0 ...............................T.TT | ========== ====== ====== ====== =================================== ============================================= ================== 11 35 99.0 42 GTTGAAATGCCCGAAAAAATCGGCGGGATTGCGAC # Left flank : AGAACTCGGTCTAATTTGACTTAAGTTGTATGGTTTTATGGTCTTACCCTATCAAATTGGAAAAGTAAGTTAGTTGTTTTTCTACCGTTTATCAACCATGTTATGGTGATTTCTTCTTAATACGTGGAGCATTTGGATTCACTTGTTTCAGTAGGAGAAGGTAAATTAGCAGAAAATAATTCTGTTTATTGCAAAAACTTGTCTTCTAATTTGCGGCTATTCTGTTCTTTTGCCTGTGCTGGCAGCTAACAAACACCGGTAAGCTGTTATTTAATTAACATTAATGTCGGCCGATTTCCTGCTTTATGGTTAATTTACGGGTTAATTTGCTTCAGGTGAGAAATCTGCTAAAATTAGCGGTAGAAGTGGTCTTTCAAAACCGGATAGGCCTTTTGTTAGGGCTTGCTAACTTGTACTGGACCAAGCCTTTAGAAATTAATGGTATGAAGATTGAGCATGAAATGAATACCTTGATTTATAAGGATTATTACCCATCAAGG # Right flank : TTTTTTCTTTGTATTCTTTTTGATGAATTGATTCCCGATTTTTGGTAGTTTTTCAAGTTAAGATTGCTGTTTTGTGGGGAAACTTGAATGAAGCTGTTTAGCCGGATTCGGGTTGTTTATACTAAGGCTTTCTCTTCACAGTTTGGCCCGATATTTTCTGATTGGCCTTCTATTGTTTTGCTTTTTTTTATATTTCTCTTGCTTTCACTGATAACAGGTTGGATACCCGACGGCTTAACTGCCCTTTTTGAAGGTGAAAGGTTAAAAGGTCTCTTTATGCTCGGGGGCTCTTGTTCCATATTGCTTTTCCTTCTTGTTGCTGCCAAGTATCTTTTCGTTAACGTGAGGTTCTACGCGGTAGAGCGAACGCCTCTGAAGAGAAAAGCACTGATTCTTTTCTTAAGCGTTCCGGGTAAAGGGGGAAATTCCCGAGAACTTTTGGATGCCCTAAGAAAGGCCGAGACGATTGAAGAGAAACTGGAGTTAGTAAACGGTTCATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATGCCCGAAAAAATCGGCGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.10,-5.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 1049961-1050183 **** Predicted by CRISPRDetect 2.4 *** >NC_014926.1 Thermovibrio ammonificans HB-1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 1049961 28 100.0 38 ............................ CTCTTCTTTAAGAACTCCCTTACGGTCTCAAGGTCGCC 1050027 28 100.0 38 ............................ GTCGTCATATAGGGAACGCAAGTTCATCTCCTCCCCCG 1050093 28 100.0 35 ............................ TTGCGCTAAAACGTCGTTCCGTAGGCCCTGTTAAA 1050156 28 85.7 0 .C..................C.C...T. | ========== ====== ====== ====== ============================ ====================================== ================== 4 28 96.4 37 GTTTTATCTGAACAAGTGGGATTTAAAC # Left flank : GCTACGTTCCCGAGTTCGGAGCAAGACCCCTCAGGAGAACCATCCAGAGGGAAGTTGAAACGCCGCTTTCGGTTAAGATTCTCGAAGGCAGCGTGAAAGAAGGCGACACAGTAGTGGTAGACTACGACAAAGAAAAGGGTGAGTTCACCTTCAAAGTAGAGAAGGAAGAACTTCCACCCAAAGAGGCGAAGCTCAAAACGCCTGAAGAAGAGGAGAAGAAAGAAGAAAAGGGCGATAGCGATAAATAACTCTTCACTGCGCATACCCTAAAGGGGGGCTTTTAGCCCCTCTTTTTATTTTCTTTTTAGAAAATCTACTGCATTCCATCATAAAATCTTCAAAACCGGGCTTGTAGCTTGGGCCGCAATCCACTTAGAGTTTATATTAGATTATCATCATAAACTTAATGGAGGTCCGCTGCACTTAACCCCTTTCTCAGAGGTTTGTTATAATGGAGAAAGTGTTGTAGTTCTTTAACTTGAGAATATGGCCAAAGGTTG # Right flank : CACTCACAGTTTCCCAACATACCCCAGCTCTTCAAGTGAGATTAATTTCTTTCCCTATTTATCTACCTCAAAGCTGACCCCCATATCAGCGTTAAAATAACCCTGAGTAACTGGGATTTTACCTCTGAAACTCCTAACTACCTACCTTAATTCCTCTTTTATTAGAACCTGGCCATTCCAGTTGCCGGCCCTTGCAAGCTCTATCCTCAATTGCGCCTCCAGCTCTCTTTTAGTTGAGGATAGAGCAGACAAAAGAAAAAAGTGGCAGGAATTGACAGGTTTTCGTTTCGGATAGCAGAAATTTTGAAACGAAAGAAGGGTTTTATTTCAAAGGATGAAGAAAAATGGGAAAGCCGGCCTCGGCCGGCCAGATTAGGCGGTTTTGACAGGTTGTTTAGAAGAAGAGTTTTTTGCTAACTTTATAATATCTTCAAGAAAGGCTTTGGCTATTTTGTTGTAAGGAACTTCAGGGTCTACATTTTTAACTTTCTCCCAAGTTT # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACAAGTGGGATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 4 1168350-1166769 **** Predicted by CRISPRDetect 2.4 *** >NC_014926.1 Thermovibrio ammonificans HB-1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================== ================== 1168349 28 100.0 35 ............................ TACATTTTCTTGTAATCAGATATGGCTCTTCAGGA 1168286 28 100.0 37 ............................ CCGCTTGCTCCGTACTTTGACCCCAGAATTGAAACGG 1168221 28 100.0 36 ............................ CTATTATACTGTCAAACTACAGGGAAACGGTTTTCT 1168157 28 100.0 36 ............................ TCAATAATGGCGTTTACCTTGTTGTAGGTGAGAATA 1168093 28 100.0 36 ............................ AGCGTAACGAAATCGAGAGTAGGGAATCCCCAGCTA 1168029 28 100.0 36 ............................ TGAAGCTGAAGAAAATCTTCCAAGACCTCAGCAAAA 1167965 28 100.0 37 ............................ CTTTTTTAAGGGCAACGAGGCCCTTCTTCTGAAGTTG 1167900 28 100.0 36 ............................ GTCTCAGATTGTTGAGTAATCTGAGATTCATCGTTA 1167836 28 100.0 40 ............................ CTTAGAGTAAAGGCCTGGGCAGACTTCTGTGGAAACTCCA 1167768 28 96.4 37 .................A.......... AAGGCTGAACTATTTTGACACAATCGTCTGCAGTAGC 1167703 28 100.0 37 ............................ TTTGGCTACGCCCTCGGCACGGTTGCGGCTGGAGCAA 1167638 28 100.0 38 ............................ AACTACCGTGCCTGCATTAGAACAGTTTGGAAAGGCGT 1167572 28 100.0 36 ............................ GTTCCCTTCCAGTCTGACTGGACTGTTCCCAGTAGT 1167508 28 100.0 36 ............................ GTTCCCTTCCAGTCTGACTGGACTGTTCCCAGTAGT 1167444 28 100.0 37 ............................ GTTTTTTCGCCTTCATCTGCTCCTTGTTGAGCTTCCA 1167379 28 100.0 38 ............................ CACTCGGCAATTGAATTTTCCAAACTTTGCCCTTGCCC 1167313 28 100.0 38 ............................ TTCTGTCGAAAATCTTTGTCGCTAACTCTATTATTTCG 1167247 28 100.0 37 ............................ CAACGATAAAAGCTTGCTATTGAGGCGTTTTCACCTA 1167182 28 100.0 37 ............................ AACGTGATAGCTGAGGCTTACAGCGCAATAGAAAAGT 1167117 28 100.0 39 ............................ TTGCAATATACGGGGAGGCTCAGGCCGGGAGTTTTGGAG 1167050 28 100.0 38 ............................ TTTTAGAGCAGAAGAGTTTAAATGTCCGTGTTGTGGCG 1166984 28 100.0 39 ............................ GAAATTTGACCCTGAGCTCCTGAGGCTAACCCTGGAGGA 1166917 28 100.0 35 ............................ CTTTCTTAACCTTCGGCCAACCGTTAACAGGGCAC 1166854 28 92.9 29 .......C...................T CTGGATTCAACGTTCCTACAAGTATAGAC Deletion [1166798] 1166797 28 71.4 0 A..A..GC.TTT.......A........ | C [1166791] ========== ====== ====== ====== ============================ ======================================== ================== 25 28 98.4 37 GTTTTATTTGAACAAGTGGGATTTAAAC # Left flank : GCCGAGAGCCTCGGCCTTTACCTACCTCAGATGCTGGTTCCCTTATTCTGCTGTCAAGGACGCAGACACAAAGCCTGGTGCCCATAGCGGCGGGGAAACACCCGTGCCCATTCCGAACACGGAAGTTAAGCCCGCCAGCGCCGATGATACTGCCCGCGGGAGCGGGTGGGAAAGTAGGGCGGTGCCAGGCTTTTTTTTATTTTTAGAGCCCAACTTTCTTACAGCTCATCGAGCAAATCAAATCCCAACCTTTTCTACTAATCGCGCCTTGTATCTACTTCCGAATCGCTAATAAAACAGCTCTTTAAGAAATTTACTGCATTTCATCATAAAATCTTCAGAACCGGGCTTGTAGCTTGGGCCGCAAGCTCCTCAGAGTTTATATTAGACTATCATCATAAACTTAATGGAGGTCCGCTGCACTTAACCCCTCTTCCGCCGGTTTGCTATAATGAGAAAAGTGTTGCAGTTCTTTAACTTGGGAATATGGCCGAAGGTTG # Right flank : ATTTTTGAACAGGTAATTAGGGCTGTAGGTGAGTTTGGGAGAGGGCAGGAGGCCCTCTCCGGTGTTATACGTCGAGGTTTCTTACTTCTTTTGCGAATTTTTGGATAAATTCTCTTCTCGGTTCGACTTTGTCGCCCATTAGAACCGTGAACACTTCGTCTGCGCTGACGGCATCTTCTACTGTAACTTTGAGGAGTGTTCTGTTTTCCGGGTTCATTGTTGTTTCCCAGAGTTGTTCCGGGTTCATCTCGCCGAGTCCTTTGTATCTTTGAATGTAGATGCCTTCGCGGCCGGAGTCTATGAGGAAGGTGTAGAGCTCTTCAAGGGTTTTAAACGTTAGTTCTTTTCCCTTCTTCTGGGCTTTGTAAGGGGGCTCTCCGAGCTTGGCTCTTATTTCGCCTTTGAGTTTTCTGGCCTGCCTGTAGAGGTCGGATATGAGGAGGTTTTCGTCTATTGTTACTTCTTTTTTGAGGTATTTGTCTAACGGAACTGTTGCAATG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATTTGAACAAGTGGGATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 5 1211026-1212134 **** Predicted by CRISPRDetect 2.4 *** >NC_014926.1 Thermovibrio ammonificans HB-1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =================================================== ================== 1211026 35 100.0 43 ................................... TGGACCTCTCTACGATATAGAGGTTCCACCCTTGGGAGTCTTT 1211104 35 100.0 38 ................................... GCAGGGAGGGTCACCTTGAAAGCTTCGGCTACTACCTT 1211177 35 100.0 45 ................................... CGTGTCTGAGTACTGGGTGTTCTCCTCCCATCTTCTATCTTCATA 1211257 35 100.0 45 ................................... AATCTAAAAGATATGAATCAAAGGTAATAGTATAGCTACTGTTGA 1211337 35 100.0 36 ................................... TTTCTGCTTTCCTCACTACTCTCATTCTGCACCTCC 1211408 35 100.0 37 ................................... AGTCCTTTGTCTTTGAGTTGAGAGGCTACCCTGAGTA 1211480 35 100.0 43 ................................... TCATGTTCCACCTCCTCTTGATTTTTAGATTTCGGGAGCTAGG 1211558 35 100.0 41 ................................... CAAAATCCTACAACAGATAAAATTGAAATCAAACACTATCC 1211634 35 100.0 45 ................................... CTGGGCCTCCAAGGCTGTCCTGCCTTCGGCGGTAAAGAATCCTAG 1211714 35 100.0 35 ................................... GCAATCCGCGTACTGGGTGTTCTCCTCCCACCTCC 1211784 35 100.0 45 ................................... ATCATATTGATGGGGGTAATATTCTTCTATTATTATTTCCTGTAA 1211864 35 100.0 43 ................................... TTTTCAACACCACTTCCTTTATTTCGGAAGTGGTGGTATCAAA 1211942 35 97.1 51 ...............................T... GATTGCGACGCCCAATATCCTACGTCGATTCCAAGAAAATCTGCCTCTCTT 1212028 35 85.7 35 ......G........G.......T.......T..T GTAAACCAGCCTTTTCATTTCTGTTCCTCCTTTTG 1212098 35 80.0 0 T..T....T.T.......A..AG............ | T,G [1212102,1212105] ========== ====== ====== ====== =================================== =================================================== ================== 15 35 97.5 42 GTTGAAATGCCCGAAAAAGTAGACGGGATTGCGAC # Left flank : CCATCTTGTTCTCGATAATGGCTACACTTCCGCATCTAACGAGCCCCAAAACCCTGCAATACTGGTAGAAGTGAAGGAAAACGGAAAAACCATATATGCCGGCCCCATATACCAGAAGTTTCCCACAATGTACAACATCAACCATCCCCGGTACGAGCTGATACTTAAAAACATCTCTAAGCAGTAAATCTTATTAGGAGGGGAGGTTTTCCCCTCCTAACTCCAAATATTCTGAATTTTTGCTCAAATTTATTCCTAAAACCCCACTTTTAAATAAGTTAAAGGTAGCGCAAAAAGACCGATTTTTACACAAAATCTACCCCAGTTGAAAAGGACAAAGGGAACCATTAAAATTAGAAATAAGGTCGGTCTTTCAAAATCGAATAGGCTTTTTGTTAGGGTTATCTAACTTGTACTGGACCAAGGTCTTGGGAACCAAGAGTATGAAACTCAAGCCCAAAATGAATACCTTGGCTTGTAATAGCTATTACCCATCAAGG # Right flank : CATTTCCCCTTTGCCCTCAGGGTTTTCGAACGGTGAAACGTTCGTGGACGCGGCAGGCCTGCCTCTCGGGAAGGCATTAAATTAAGAGTTGAGGATGAACTTCTAAGAGAGGTGGAGCATGCCGGTAAGGGACTTAATCAGGAGGAAGGTGGTAGTTATTGAGCCCGACGACACTGTAAAGCTTGCCGCCCAAAGGATGGAAGATAAAATGGTGGGCAGCTTGGTGGTTATAGAGGGGGATAGACCGGTAGGCATAATAACAGACAGGGATTTAGCCCTAAGGGTTATAGGAAGAGAGCTTCCCCCCGACACCCCGATAAAGGAGGTGATGACAAGGGACCCGATAACAATAAGGGAAGACGCCTCTTTCTTTGAGCTAACAAAAACTTTCCGCGAAGCAGCAGTCAGAAGGTTAATTGTTGTTGACAAAGATGGTAAACTGGTGGGGCTTATCTCCATAGACGACACTATGGAGCTTCTGACCACCGAGTTTGCCAACC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATGCCCGAAAAAGTAGACGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.90,-4.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 6 1494258-1493917 **** Predicted by CRISPRDetect 2.4 *** >NC_014926.1 Thermovibrio ammonificans HB-1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 1494257 35 100.0 42 ................................... CATTCCTACAGCGTATTGTAGGAATGACCCAGAAAGCATTAT 1494180 35 100.0 36 ................................... GAGGCAGCACTGTGTTTCATCTCAATTACGATCTGC 1494109 35 100.0 44 ................................... ATTACAATATCTTCCCTCAGTATATTATTATTGTTGTTGTTATA 1494030 35 100.0 44 ................................... CGATACTTATCATATCCAATATACTTCAACCTCCACATCTTCAT 1493951 35 94.3 0 ................................AG. | ========== ====== ====== ====== =================================== ============================================ ================== 5 35 98.9 42 GTTGAAATGCCCGAAAAAGTAGACGGGATTGCGAC # Left flank : GGCTTACCCGCAGAAAATTCTTTTATTTTTTAAGAGATACTCTCGAAATGGAAATAAAAAGCGGTAAATTTTCCAAGTATCTTCTGGTTTACGATATTAGTGACAACTTGATTAGGATAAAATTCTCAGATATTTTGGAGGAGTTCTCCGAAAGAGTTCAGCTTAGCGCCTTTGAGGTTCCGGCATCTCCTAATGTTATCGCAAGAATAGCAGTATTAGCTATGCAGTTTGCCGAGATAGATGATAATTTGAAGGTCTATCTCTATCCTATAGATAAGGGTAGTGAGAAGAAAATTATTCGTATAGGAAGCTCCTACCTTTCATTTAGGGATATCTTGTGAATTGGCCGAGAGTGTGTTATCATTTTAATAAGGTCTTTGAAAGAAGAGAATATGTTAGTATATCCTAACCTGTACTGGGGAGAAGCCTTGGGAACCAATGGTATGAAAGCCGAATGTAAAATGAATACCTTGGCTTGTAATGGCTATTCCCCATCAAGG # Right flank : AGGAAAGGTTTGGTAGCAGGGGATTTATGGAATTAGAGTTAAGGTTGTAACCTATTCTCTAAAGGTGTCTATGATACCTTTGATGATAATCCACATAATGATTAGGAATACAAAAACATCCATTAATTTCATGGTTTTCTCCTTGTATGGGGTTTAGGAATTTCCTACAGCAACTCTATTTCGTCACAGTATTTGGATATCTCTGGGAGTAAATGGTGTTCCTTTTTCTTTTACTCTGCTTTTGACTTTATCTTCGAGTAGGTATATAAAGATTTTGTCTCTTTTTGAGCAGTATTTTTGGATAGTTGCTTTGAGTTTGGGGATTTGTGTTTTTGAAATTTCTATCTCGAAAACGCTTCTTTGGATTCTAACTCCGTATTTTAGAAGTTCTTTAGCAATTCTGCATCTTCTTCTGTAGTCTGAGGATACCCACGCACCTTGATATTCTTCTTCAAAGTTGAAAATGTCGTAGATAACTACATAGGTGGAGTTTTTTCTTC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATGCCCGAAAAAGTAGACGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.70,-4.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 7 1539364-1539979 **** Predicted by CRISPRDetect 2.4 *** >NC_014926.1 Thermovibrio ammonificans HB-1, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 1539364 28 100.0 37 ............................ TAGATATTGGGGGTAAGCAAATTCAAATAAATCAATG 1539429 28 100.0 37 ............................ CACGAAGAGGAGATGAGATATTTCCACATCTACTACA 1539494 28 100.0 39 ............................ TTCTTGTCCTGAAAGAGGCCATTGAGAACGCCCTCAAAG 1539561 28 100.0 37 ............................ TTGGCGTAGCTATTCACAAAAGCCAGCTCTATCGTGG 1539626 28 100.0 35 ............................ TTAGGAGCTTCTGCCTGAGTTTCTCTATTTTGTTG 1539689 28 100.0 38 ............................ CGGGGGAGGAGATGAACTTGCGTTCCCTATATGACGAC 1539755 28 100.0 38 ............................ GGCGACCTTGAGACCGTAAGGGAGTTCTTAAAGAAGAG 1539821 28 100.0 37 ............................ GATTACGAATACGAGGTTACCACCGCCACCTTTGAGG 1539886 28 100.0 38 ............................ GAGCAGGAATAGAACTCAAGAGAGAAAGGCCGTTTTAG 1539952 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================= ================== 10 28 100.0 37 GTTTAAATCCCACTTGTTCAGATAAAAC # Left flank : TGTAGTTGTTAATCGGTATGGAGAGAAGAGAATAGGCGTAGGCTTCATAAAAGGCTTCAACCTTAAAAGGGGAGCCTTGGCAATGTCGATAGCCCACGACCACCACAACATAATAGCCCTGGGAGCTTCCGACCGGGAAATAGTTCAAGCAGTTAACCGGGTAATAGAAGTCGGTGGCGGCATAAGCTTACACGCCGGAAACCGCAACATAACAATTCCCCTACCCATTGCGGGCCTTATGAGCAACTCAAACGTTAAAAGCTTAGCCGCTAAAGTGACCGAAATAAAAACCGAGCTTCAAAACCTCGGCTGCCGGCTGAAAAACCCCCTAATAACACTGTCTTTCATGGCTCTTGAAGTGATTCCAAAACTCAAACTAACCGACAAAGGCCTTTTCGACTCAGAAAGGTTTGAATTAACTTTCCTCTACTGCTGACTTTAAGAGAGCAGCAGCAATATAAAGCGGAAGTGCCTCCCAAGTAAAGCTAAATGCTTTTAAC # Right flank : CCAACCTTTGGCCATATTCTCAAGTTAAAGAACTGCAATGCTTTTCTCATTATAGCAAATTGGTGAAGAGAGGGTTAAGTGCAGCGGACCTCCATTAAGTTTATGATAATAATCTAATATAAATCCTGAAGGGCTTGCAGCCCAAGCTACAAGCCCAACTTTGAATATTTTATGATGGAATGCAGTAAGTTTTCTAAAACTATATTTTAGATACAGGAACTCCGAAATACAGGATAGAGCGGAACCGAAGTTAAATAAAAAAGGCGGGGCTTAAAGCCCCGCCTTCCGGTGTTTCACTTCAGCACTTAACCTTCGGCTTCTGCCTCTTCACCCTTTTCTGCTCCTTCATACTCGGGGCAGTACTCCCAGGTAACTTTCCTGTACTCTTTCCTTCCGGTTCCTGCAGGTATGAGCCTTCCGATTATAACGTTCTCCTTCAGGCCCCTAAGGTAATCCCTCTTTCCTGCAATTGCAGCTTCGGAAAGTACCCTTGTTGTCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATCCCACTTGTTCAGATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 8 1609896-1610642 **** Predicted by CRISPRDetect 2.4 *** >NC_014926.1 Thermovibrio ammonificans HB-1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================== ================== 1609896 28 100.0 35 ............................ CCAAAAAGGCTCCGGAGCTTCCTAAGGAGCTCAAG 1609959 28 100.0 38 ............................ TATAAAACTCAAAGAGCTTGAACTAAAACACGAGGAAG 1610025 28 100.0 38 ............................ GAAGATAGAGTAAAGTTTCATTAAGTAGCGACGGGCGG 1610091 28 100.0 40 ............................ ATTTCGGACTGGTATGTTTTGAACCTGCCCGCCAAGGACC 1610159 28 100.0 39 ............................ TAAACCTTCTCAACTGTCTCAATCGTCCTTTCGTAAGAA 1610226 28 100.0 35 ............................ TCCAATTATACTCCTAAATATTCTTTTTTAAACCA 1610289 28 100.0 38 ............................ GCGGCATGGGAGCTCTTAGAGAGGAGAAAGAGGGCACC 1610355 28 100.0 35 ............................ CATATACAATATCTATTCCTTCTATCAGAGATGCT 1610418 28 92.9 39 ...............A..A......... TGCAGGGCTACTACCCCCTTGTTGTGGAAGAGGAAGCTG 1610485 28 92.9 36 .......C...................T CAAGCTACGGCGGTTTACCTGCCATAGCTTCTATCC 1610549 28 92.9 35 .......C.........A.......... GATAATCAGCTTCGTCCCTAAAGAGTTGATAAACG CAAG [1610565] 1610616 27 89.3 0 .......C.............-.....G | ========== ====== ====== ====== ============================ ======================================== ================== 12 28 97.3 37 GTTTTATTTGAACAAGTGGGATTTAAAC # Left flank : CCGAGAGCCTCGGCCTTTACCTACCTCAGATGCTGGTTCCCTTATTCTGCTGTCAAGGACGCAGACAATAAAGCCTGGTGCCCATAGCGGCGGGGAAACACCCGTGCCCATTCCGAACACGGAAGTTAAGCCCGCCAGCGCCGATGATACTGCCCGCGGGAGCGGGTGGGAAAGTAGGGCGGTGCCAGGCTTTTTTTTATTTTTAGAGCCCAACTTTCTTACAGCTCATCGAGCAAATCAAATCCCAACCTTTTCTACTAATCGCGCCTTGTATCTACTTCCGAATCGCTAATAAAACAGCTCTTTAAGAAATTTACTGCATTTCATCATAAAATCTTCAGAACCGGGCTTGTAGCTTGGGCCGCAAGCTCCTCAGAGTTTATATTAGACTATCATCATAAACTTAATGGAGGTCCGCTGCACTTAACCCCTCTTCCGCCGGTTTGCTATAATGAGAAAAGTGTTGCAGTTCTTTAACTTGGGAATATGGCCGAAGGTTG # Right flank : GGCGATAAGGGGCTATGCATAATCTTAATAGATACATAATAAGCAGTTTACACAAATATTACTGTTATTTTCTTTCCGAAAGCTTTGTAAACTTTATCTCTAAGCTCAAGACTTCTTTCTATTGACGGTCGCTTTTTAAGATAGACCACAATAGCTGAGAAGCCGCATTGGATATCTTCTATCTCATTGGGTTTCAGAAGTTCTTTTTCTATAAAGTATTTTATCTCTTGAAGGGTTGGAAAATCTCCTACACACATTCTATATCACAGGATTAGGATTCAATAGTTTTCAGAGAAATTTATATCTAAAGGTCAAGCCATCTTTTTATAAAAAAGCTTAATGTTCAAGCTTAAAGTTGATAACGAACTCAAGCTTCACTCTTTTGTTAGTTGGCGGTTTAGGGAAGGAGCAATTATTCAGTATTTTGACTACGGCGGAAGTCAGAATTCTTGAAGGTGACGAGAGAATTCTCAGAGAGCTTAGTTGTCCTTCAGGTGAGA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATTTGAACAAGTGGGATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //