Array 1 16882-16553 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKMQ010000093.1 Providencia rettgeri strain 2020EL-00093 NODE_93_length_16920_cov_36.142321, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 16881 28 100.0 32 ............................ TCAGAAATAGCAAAGAATCTCACGATTTCCGA 16821 28 100.0 32 ............................ ACTGCTCGCAATCCGTTTTCATGCTCCTGCGG 16761 28 100.0 32 ............................ TCACTATTAATAGCGATATGAATGATTAAGTG 16701 28 100.0 32 ............................ CTAACACCCCTCATTTAAAGCTGGTATATCAG 16641 28 100.0 32 ............................ AGTGGATTAAAGAGCTTAATTTATCAACTTAA 16581 28 89.3 0 ...T......A.........T....... | G [16555] ========== ====== ====== ====== ============================ ================================ ================== 6 28 98.2 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TTAGAAACTAGGAACCCGATCACCCTCATGCATAGCTA # Right flank : GAATATTAAAGAATAGATATCTAGATTCTCTAATTGGTGAAAAAAATAAATGTGAGTTAAAGCTAGTTTTTTGTGAAATAAGTAGTTATACCATCTTTATCTTAAGTTAAATTTAATATCAAATATAATACGTATCTATCATTCGATAGCTTAGAAATGAAATATAGAACGGGTATTATATTACTGCCACAAAGGCAGATTTTGATTAGAGATAAATACCTGAAAAATAGACCGGGTAATCAGATAATAATAGAGATAACTAGGAGGGGTTATGAGCTTTGAGTTTGAAATAAATTGTTATTGGTTTTCAATCATCATTCGATTTTATAAATAATTTTATAAACCTGCATTTAATTAAAAAATACAAACATCACGACTCAAATAAACAAATTAAACATCAATGACAATTGCTCAAAAGCTTGGTGGATAAGGCGTTCAGTATATCGGGGAAGGATGGAGATAATTACCCCTAGCATACTGATACCTATAGTTAAGGTGAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 848-40 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKMQ010000029.1 Providencia rettgeri strain 2020EL-00093 NODE_29_length_41558_cov_41.861794, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 847 28 100.0 32 ............................ ATTATACCGCAAGCTGAAGTGGGTATTTATGT 787 28 100.0 32 ............................ GCAACCGAATACTTCGACGCAAAACCAGACTA 727 28 100.0 32 ............................ GCGATGGTGACTGCACTTGATGTCCGTCATAA 667 28 100.0 32 ............................ ACATGAAAATCGCCAGTGAATGCCTCTTGGTT 607 28 100.0 32 ............................ CCCATTGAATGCGAACGCCTACAGGGCTTTCC 547 28 100.0 32 ............................ ATTTTTTGCCGTTCCACTTATCAAATTCTGTT 487 28 100.0 32 ............................ GAAGATTTAATTTCCCTTGGCAATATCAACCA 427 28 100.0 32 ............................ ATTGAAGTTAATACTGGTGTAGCCGCTGTTGT 367 28 100.0 32 ............................ TTGAAATTTCAATTCTAGCAGATGATATTTCT 307 28 100.0 32 ............................ AACTTGCGATCTATTGCCTTAATTTCCTCGTC 247 28 100.0 32 ............................ CTAGGAACCCGATCACCCTCATGCATAGCTAA 187 28 100.0 32 ............................ TCAGAAATAGCAAAGAATCTCACGATTTCCGA 127 28 100.0 32 ............................ CTAGGAACCCGATCACCCTCATGCATAGCTAA 67 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 14 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATTAAATCTATTCAAATCGTGCCAGAGCAAAGTGTTCCTGTCAGTTATATTCGACGACATGTAAAAGGTCAAAACCGGATAGAAGCCGATATGCAGCAAAAGGCACGTTTATGGTCTGAAAAATCAGGTCAGTCAGTGGCGCAGTGCTTGGAAGTGTTATCTAAAAGTCGGCCGAAAGCCAATAACCGTTTACCGTTTATTTGGGTTACAAGTTTACATGCAAAGAATGAGAAAACCGGAAGCCGGCCTTTTCCACTCTTTATTGAAAAAGTGATAGCAACACAAATGCAAGCTGGGATGTTTAATTGCTATGGTTTAAGCCAGCTTTCAAATGACCAAACGTTGGTTGCAACGGTTCCTCATTTTTAACCATTATTTTTTGTTCTTTAAAAAATAAGTTTTAAATCAGCATGTTATAATTATTCATAAATTAAAGGGTATTTTATAATAAATACCCTTAACTAATTGTTATAGCATGATTATTATATTAAATTGCATA # Right flank : ATCAGAAATAGCAAAGAATCTCACGATTTCCGAGTTCACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10713-9485 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKMQ010000029.1 Providencia rettgeri strain 2020EL-00093 NODE_29_length_41558_cov_41.861794, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10712 28 100.0 32 ............................ ACAGGAAATGATTTAAATGTGATCTCTCCATT 10652 28 100.0 32 ............................ TAGCGCACCACGTAATGCACCGCCTATTGTAA 10592 28 100.0 32 ............................ AACTCAACTCCATCATTTCCACTCGGCATCGT 10532 28 100.0 32 ............................ AAGTGAAATGTCTTCATCATCGAATGTATAAT 10472 28 100.0 32 ............................ ACATCGGAATCGTGGCGTGATAAACAATCAGG 10412 28 100.0 32 ............................ CCTACCCGATGGATCGTACGGTTTTATCTCAA 10352 28 100.0 32 ............................ AGTCAATGAACCTATCATTGAACCTAATAAAT 10292 28 100.0 32 ............................ CGACTATTGCGCCTTGTAGGTAACTGTTCTCA 10232 28 100.0 32 ............................ GATCACCGGTGAAAATCACAATCAACATAATA 10172 28 100.0 32 ............................ TCGCACAATTGCTGCAAATGGTTGCCGTAAGC 10112 28 100.0 32 ............................ TTTATGGATGCACTCATTACCGGTCGAAACCA 10052 28 100.0 32 ............................ TAATGGTATGCCAAGCGCTACCAACGAAATAA 9992 28 100.0 32 ............................ AATTACATGGCACCCTTGGTCTACACTCAGAT 9932 28 100.0 32 ............................ TGACAAATCTAAAATTTTCAATGTCAACAATA 9872 28 100.0 32 ............................ TATCAAAGTGGGTAAAGGCGAAGAGTATGAAA 9812 28 100.0 32 ............................ ATCATCGAAAACGAACTCTGAACCTTTTAAGT 9752 28 100.0 32 ............................ ATCTATCACTATTGGTGATTCACTGATTGCAT 9692 28 100.0 32 ............................ AGTCATCCTCTTTATCTATCGTGTAGATGATG 9632 28 100.0 32 ............................ TCATGCTGATGAATGGGATCAGGATGTTCTCT 9572 28 92.9 32 ..........G..T.............. TCTTCATTGCATCCCTGCGAGTTAAATTAATC 9512 28 89.3 0 .............A........A.A... | ========== ====== ====== ====== ============================ ================================ ================== 21 28 99.2 32 GTTCACTGCCATACAGGCAGCTTAGAAA # Left flank : ACCAAATTTCTAATATTGAAGCGAAACAAGGCTTACAACTGCAAGAAATTGATAAATTAGATTTCTTGGCAGATACCCGTTCGATTCAAAATGCAGCTCGTAAAAGTGAGCTGCTTGAGACCAACTGGACGGGTACTACGACGGATTACTATAAAGAAAAGGCGATGTTTGATGCATCCCAAAGTATTTTTAAAGATTTAAACAGTATGTCACTTTTTGGTAGCCGTTAATAAATTAAAGGTTTAATTTTACTCACCGCGCTTTGGAGTGATTCGAGCGCGGTTTTTTTTATTTTGAGGTACCTTTATTTACGCACTATTTTTGTTTAGTGCATATTGCATAAATCCCGATTTGTTTTACCCTAGTTTAACCTTTATTTTTTGCTATTTAAAAAATTAATTATTAAACAATAAGTTAGAATGCCCTCCCAAAACAAAGGTATTTTGGCGTTTATAAAACTAGTACATTGTTTTTCTTTGTTTTATCTTATTTAACTAATA # Right flank : CAGCCAAGGAGTTATTTTTACTGGATATTCTGTGAAACCCCTCGCAAATTTGGCTTTAGTGATAATTTAAGGCTTGTTTCATTGGTTAAAGCTTATTCTAATAAGATTGATTCAAAAAACTTATTATTTAAGGGAGAATTCAACTGCTTATGGATGACTTTTCACCTAGTGACTTAAAAACCATCTTACATTCCAAGCGCGCTAACATGTATTACTTAGAGCATTGTCGAGTGATGCAAAAAGATGGTCGAGTGTTGTATTTCACAGAGGCAAAAAATGAAAACCTCTATTTCAATATCCCTATTGCAAATACAACAGTTTTGTTACTTGGTACAGGAACATCAATTACCCAAGCCGCAATGAGAATGTTATCTCAAGCGGGGGTACTAGTTGGGTTTTGTGGGGGTGGTGGTACACCTCTGTATATCTCTACAGAAGTAGAATGGATGACACCACAAGGCGAATATCGGCCAACGGAATATTTACAAAGCTGGTTATCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //