Array 1 280598-280390 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZIK01000001.1 Xanthomonas albilineans strain Xa23R1 Xal-Xa23R1-G1-Mol001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 280597 28 78.6 32 ACAAC.......A............... CTCGCCTGCTTTGCTGCCCTGTGCCGGCGCTG 280537 28 96.4 32 ..................C......... TTGCAGGGCGCAAGGCAAAACAAGAGGTGTTG 280477 28 100.0 32 ............................ GGGAGAGATCGGCAGCGGGAGTTGATACATTT 280417 28 92.9 0 ....................A...A... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 92.0 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : GAGGCAGCGCTGGATGGGCATCTGCATGCGACCCAAGCGCAGTGGGACCCGCGCCCATCGCTGGGGGTGGTGCTGGCCGCCGCACCATATCCGGACACACCCGTCACCGGCGAGCCGATCACCGGCCTGGAGGCGGTGCCCGCCGATGCCAAAGTGTTCCATGCTGGCACCGCGCTGGATGCGCAGGGGCGCGTGGTCAGCGCCGGCGGCCGCGTGCTGTGCGTCGCCGCGCTGGGCGATAGCGTGGCCGATGCGCAGCGCCGCGCCTATGCCGGCGTGGCCCGGATCCACTGGGCCAGCGCTTTCCACCGCCACGACATCGGCTGGCGCGCCATCGCGCGCGAACGCGGCGCCTAGCGCATGTGAGTACGACATCCAGTCACGACAGGCATGATCGGTAACGCCCGTGGACAGGACGTCGCTGTCCGCACAAACGGCAGCGCCTGCGCCGGAGCGCTGCGCCAGGTGTGGATCCGCATCCGCGCATCCGCCCGATGCCC # Right flank : ATCAGGCACTGGATTGCCACGCCAATGCCTCCCATTCACTGCCGCACCCGGTGACGGTGATCGCGTCGCGCCAACCACGGGTGCGCTATCTTGTTGCGGTGCACACAGCCTCGCTCGAATCCCACCTCAGCCGCCTCTGGGCCCATGAAAAGGCCAGCTACGGCCTACGCGTGTTCATCGCGCTGGCCGCGGCGATGGGTCTGTGCTGGCATCGCCAGCAGTTGGATGCGCTGCCGGCGATCTTCCTCGGCACCATCGCCAGCGCCATCGCCGAAACCGACGACAACTGGCTGGGGCGGATCAAGTCGGTGCTGCTGTCGCTACTGTGCTTCGCTGCGGCCGCCGCCGCCGTGGTGGTGCTATTCCCGTATCCGCTGGCGTTCGCTGCCGGTCTGGCGCTGTCCACCTTCGCCCTGACCCTGCTCGGCGCGCTCGGCGAGCGCTATGCGTCCATCGCCCAGGGCACGGTAGCGCTGGCGATCTACACGATGATCGGCATC # Questionable array : NO Score: 3.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.5 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3300964-3304535 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZIK01000001.1 Xanthomonas albilineans strain Xa23R1 Xal-Xa23R1-G1-Mol001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3300964 28 100.0 32 ............................ GAGTGGGTACGCGATAGGTGCTGCCCAGTGTT 3301024 28 100.0 32 ............................ TCAACTCGGGACTTTTTTTGATACGTTACACA 3301084 28 100.0 32 ............................ GCCAGACCCGGGGCTGATCGCATTATTGCCGG 3301144 28 100.0 32 ............................ ATCATCTCGTCCGGCTGCAATAGCATTCGCTC 3301204 28 100.0 32 ............................ AATGCGCGCGCGCGGAATTTGAATCGAACCAT 3301264 28 100.0 33 ............................ ACACACCAACAAACGCGCCGAATGCGATAGCAA 3301325 28 100.0 32 ............................ GGATGGGTGGGCCGTCGAGCTTGCGCAAATTT 3301385 28 100.0 32 ............................ AGGCCTCCTGCAGCCAGCGCGGCGACGATCTC 3301445 28 100.0 32 ............................ CAGCCCAAGGAATCGCGCGCAGTTCGCGGGGT 3301505 28 100.0 32 ............................ TTTATTTGGCCCCAACGAGCTTGTCCCACGCA 3301565 28 100.0 32 ............................ TCAATCACGAAGAATCCAAGGTTAGCGCTGCA 3301625 28 100.0 32 ............................ CGCGTGCGCCCGTCGTCATCGCGCTCGCTGTC 3301685 28 100.0 32 ............................ AGAGGCATGGCCCAAATCGCAGACGCATCCGG 3301745 28 100.0 32 ............................ TGACCGGTGTGGCAGTCGATGCTTCCAACGCC 3301805 28 100.0 32 ............................ AGCGTGCGAATTCGCGCAGCAGCGGTGTTGCA 3301865 28 100.0 32 ............................ TTCCTGGCCCGGGCTATGCTCGAGCGGGTGTC 3301925 28 100.0 33 ............................ TGCTCGGAGTCGGAAACCCTCTTGATTTCTTCC 3301986 28 100.0 32 ............................ AGGCAGTGACGAGGCAGTCAAACTCAACGCAG 3302046 28 100.0 32 ............................ TCCGCCAGCGTGGCGATGCTGGTGGACTGCGA 3302106 28 100.0 32 ............................ AGTGGCTACTACGAAATCACCTTTCTTCTTCC 3302166 28 100.0 32 ............................ GGTTCGGTACGTGCGGCAGTCGATGGCGCAAC 3302226 28 100.0 32 ............................ TCGGAAACGCAAAAGCCCCGGCACTGGGCCAG 3302286 28 100.0 32 ............................ ACAGGGCAAGGTGCGTGGCACCGAGGAAAGCG 3302346 28 100.0 32 ............................ ACCACCGAATGCTTGTTGTACCACCAGCATCC 3302406 28 100.0 32 ............................ TTGAGCGCCTTGTCCCACTGCTCGCCCGGCAC 3302466 28 100.0 32 ............................ TGCTCGTCATCATGACGCTGCTGCACGCACTG 3302526 28 100.0 32 ............................ TCCCGCACCAGCGGCATACATCACCCCGCCCT 3302586 28 100.0 32 ............................ ATGCGGGTTTGCCAGCCTGGGCCAGTGGCCGT 3302646 28 100.0 32 ............................ TGCCTGACGCCGATAGCCGGGTTGGAGGCGCA 3302706 28 100.0 32 ............................ TAACTAACTGATTGTGGTGGTGGGCCGTGATG 3302766 28 100.0 32 ............................ ATCCACACCATTACCGCCCGGCAAGTTTTTGA 3302826 28 100.0 32 ............................ GTGACACGATGGGCAGTTCCGGGGACATGCGA 3302886 28 100.0 32 ............................ TCGCGTCGGCCGCATCTGCTGCTTGCCGCCAC 3302946 28 100.0 32 ............................ ACATCAAGCAAGGACAGCATTTTACCGCCGTG 3303006 28 100.0 32 ............................ TCCTGCATCCAAAAATCCATCCATCCCGCTGC 3303066 28 100.0 32 ............................ TACGCAATGCCAGCCATCGGCCAGTGCTCTGT 3303126 28 100.0 32 ............................ AGTGCAAAAAAAGACCGACATCAAGTCGGTCC 3303186 28 100.0 32 ............................ CTTGATCGCTTCAGCAGCGCAGAGCTGATGGC 3303246 28 100.0 32 ............................ TGGATGCGGTTGGGCATGAGTACCCTCAGGCA 3303306 28 100.0 32 ............................ GTGGCCACGCCGCCGCGCAACAACTGCACGCG 3303366 28 100.0 32 ............................ TATGCGGCAGTACAGCAGCGATAGCTACACGC 3303426 28 100.0 32 ............................ GTCCCGCGAGCGATGGGCGCGGGTCTATCCGG 3303486 28 100.0 32 ............................ TGGCAACTCATCAAGCCAGCCGAGCGCGGCGA 3303546 28 100.0 32 ............................ ATCCGGCACACCCTGCAGGCGCTCGCACTCGG 3303606 28 100.0 32 ............................ TATGACATGAGCAATCCACAAGATGTAGAAGC 3303666 28 100.0 33 ............................ TCCTAAGGGGTTACGGCTAACAGCAGTCCTTAT 3303727 28 100.0 32 ............................ GACCAGCAAGCAGTATGTAGGCCGCCTGGAGA 3303787 28 100.0 32 ............................ AACATGGTCAACCCCTCGCGGCCCAACGCCAA 3303847 28 100.0 32 ............................ ACTGTGTAGTCGCCATCCACCGTCGCGCCCAA 3303907 28 100.0 33 ............................ TCCTGTGCGGCGGCGACAAGTCCACTCAGGCCA 3303968 28 100.0 32 ............................ AACACCATCGGCATTCGCCGATAACTCCCATC 3304028 28 100.0 32 ............................ GTGAACCGGCCGCTGTTCGAATGGCTTGGACG 3304088 28 100.0 32 ............................ TGCTGCTGTCGCTCGCCGGCTGCGGTCAAGTG 3304148 28 100.0 32 ............................ GCTCAGCACGGGCCATTTCTTCCGCGCGTAGC 3304208 28 100.0 32 ............................ TGATGCGAATCGGAAAGGAAGGGATTGCTGTC 3304268 28 100.0 32 ............................ TGGCCCAGCGCAATCTTTGCCGCGTTCTGGTA 3304328 28 100.0 32 ............................ TGCTTGCGAGGCGCAGGGTGAATAGGAGGTGG 3304388 28 100.0 32 ............................ ACAACCGCAGCCGACTGCGCTGCAACAACATC 3304448 28 100.0 32 ............................ TGTACAACAAACAGTTCTGGGCCTATTTGGAG 3304508 28 82.1 0 ......................TGTC.C | ========== ====== ====== ====== ============================ ================================= ================== 60 28 99.7 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CCTTCACCATCTGATGGCAACCACCTGGCTGCATGGCGTTCGCGACCATGTGACCATCACCAGCATCGGTGCCGTGCCATCCGAGGCAGTGCACCGACAAGTGACGCGTGTGCAGGCCAAAAGCAGCCCTGAACGCCTGCGTCGGCGCGCCATGCGCCGACATGGGATAAGTGAGGATCTCGCCGTCCAACGCATTCCAGATTCGGCGGCAGAACAGTTGCGACTTCCGTTCGTCGTACTGGGCAGCCGCAGCACCGGCCAAACCGCGTTCCCGGTCTTCGTACGGCATGGCCCCGTACAGCAAGAACCCGTACCTGGCGACTTCAGCAGTTATGGACTCAGCCGGGGAGCCACCGTTCCCTGGTTCTGACCCTTTTTTTCTTACGACCAAACCCACCAAGGAAAAACAAACACTTAGCAGCCGCCCCAGAAAAAGGGGTTGGCTGCTTTTCTTTATGCGTTTATCTTTCAAGTCAAAGGCTTGGATAATAGAACGCCTA # Right flank : CCAGCACTTTCAATCTTCATCTTCATGGCGTTGCGCATAGAAATCTGCCGCCGCCTCGATCAGGTAGGTATAGCGTTTCACCATCGCCTGCCAGGCCAGCGCCTCCACTTGGTGTTCGACGTGGATATCCTCCGGCACCTCGCTAACCTCATCGATCAGCTTCGGGACTTCATGATTCCACCAACGCAGCATCAGGTCTGGCCGCTGATGCGTGCGAATCAGCGACTCCACCAGCGACTGCATCGCCGCGAATTGCCGCACCGTGCGAATGCGCTGGCCTTCCAAGAAGTGCGTGCGCTCCTGTTGCTCAGCCAACGCCTCTTCCAGGGCATCCAGCCGCTGGCGGAGGTCAGCAGGCCCTCGACCGAAAACTCTCATGCGATTACTCCCCGCCCAGCGCGAGCCGGGGCACCTGCGGTGCTTTCAGCAACAGCTTCTTGAAGTAGCTGTCCTTGTAATAAAAAATCTTGTTGGCCAGGATCGGATAGCCAATGCCCTCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //