Array 1 162885-161048 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIJT01000002.1 Salmonella enterica subsp. enterica serovar Infantis strain SI757/13 scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 162884 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 162823 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 162762 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 162701 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 162639 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 162578 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 162517 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 162456 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 162395 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 162334 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 162273 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 162212 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 162151 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 162090 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 162029 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 161968 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 161907 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 161846 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 161785 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 161724 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 161666 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 161605 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 161544 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 161483 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 161422 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 161361 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 161300 29 100.0 11 ............................. CGGCCAGCCAT Deletion [161261] 161260 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 161199 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 161138 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 161077 29 93.1 0 A...........T................ | A [161050] ========== ====== ====== ====== ============================= ================================= ================== 31 29 97.8 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180783-179167 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIJT01000002.1 Salmonella enterica subsp. enterica serovar Infantis strain SI757/13 scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 180782 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 180720 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 180659 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 180598 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 180537 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 180476 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 180415 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 180354 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 180293 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 180232 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 180171 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 180110 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 180049 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 179988 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 179927 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 179866 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 179805 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 179744 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 179682 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 179621 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 179560 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 179499 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 179438 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 179377 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 179316 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 179255 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 179194 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //