Array 1 85319-86489 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBJD02000015.1 Enterobacter sp. RIT 418 RIT418_S9_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 85319 28 100.0 32 ............................ ACCCTCTACCGCCGCAGCGGGAAAAACTCGAT 85379 28 100.0 32 ............................ ACCGGTGTTGAGATGGCGGCGCGCCAGGAACG 85439 28 100.0 32 ............................ ATGAAATCGACATGATGCGTTTGAGCATCATG 85499 28 100.0 32 ............................ TGGCTGGAGTCCCAGCTATGAGGCGTTTATGA 85559 28 100.0 32 ............................ GACGGCAATGAGAATGTTGTTGAGAATGCTAA 85619 28 100.0 33 ............................ CAAAGGCTGAAAATCTTTCACGCGAAGCCGCGA 85680 28 100.0 32 ............................ TATCGCGCCAGAGGAAACTCAATGGCGCACAC 85740 28 100.0 32 ............................ CGGTGGCAGCTGCAATGCCGCTGGATAATTTT 85800 28 100.0 32 ............................ TGCGTCGTCATGACCAGATTAACGGAAAAGAA 85860 28 100.0 32 ............................ GAACGCGTGTTTTAACGCGGGGTTTAACTTCG 85920 28 100.0 32 ............................ TCTCGCAGCAGTCGCAGGTGTACGCCAGCCAG 85980 28 92.9 32 ...........GA............... ACAAGATGAAAGACTACACCGTCTATCCGTCT 86040 28 92.9 32 ...........GA............... CGTGAGGGGGGATCATCAATCCTTTTGGGTCT 86100 28 92.9 32 ...........GA............... TTAGTCGATGCGATGCCATGGAATGGCTTGCT 86160 28 92.9 32 ...........GA............... TCGGCAAACGAGTGACCGGAGGCCCGCGCGAT 86220 28 92.9 32 ...........GA............... GCACCCGTCATACCGCATTACACCATCAACTG 86280 28 100.0 32 ............................ GGTTGTGACCAGAGTCGGCCGGGTTGTTATTG 86340 28 100.0 32 ............................ CTTACGTCAATCACGTTTAAGGCCCGCGCCGT 86400 28 100.0 33 ............................ CGAAATCCGAAGGGGGTTGGCGGAGCTTGGCGG 86461 28 89.3 0 ...........TT.......T....... | G [86485] ========== ====== ====== ====== ============================ ================================= ================== 20 28 97.7 32 GTTCACTGCCGAGCAGGCAGCTTAGAAA # Left flank : CGCCAGCACCGGCACGCGGTTGCGGTGGCAATCGAACAGGCCGTTAATCAGGTGCAGGTTGCCCGGCCCGCACGACCCGGCGCAGACGGCCAGTTCGCCCGTCAGCTGCGCCTCCGCGCCTGCGGCAAACGCGGCGACCTCCTCATGGCGGGTAGGCATCCATTCGATTGTTTTCATTTTATTGAGGCTATCGCTCAGCCCGTTCAGGGAATCGCCGGTCACGCCCCAGATGCGCTTAACGCCCGCCTGGTCGAGGGTTTTAGCTATATATGCAGCCACGGTTTGTTTCATGGGTGTCCATCTCCTTTAAGTGATCTCGCTTACAAGCTTAGAAGAAAGAAAGCGGCTTGCCCGGCAGAAGATGCGCAGACCCTTTTTTTTGCGTGATTTGTAATCTATTGATTTGTATAGCGGGAAAAGAGAGCGCTGAAAAAAGGGTTTACTGGCGAAAATGCGGGGGTTGTATTTATTTTACAAAGAGATAAGCGTAGATTGGTCCA # Right flank : ATAATCGAATCTATGGGATCGGTATCATTCGCTCTGCCGTACAGGCAGCGCTGTATCAAGCAAGTGCAGAACCCAAAAGCCCGGCAGCGATATCGCTAACCGGGCTTTCATTTTACGTTAACCGATTATGCCAGAACTAAATCACCCTGCGGATGGCACGAGCAGGCGAGCACGTAGCCTTCGGCGATTTCCGCGTCCGTCAGCGTCATGGTGCTGCTGACGGTATAGTCGCCGGACACCACCTTCGTTTTGCAACAGCCGCACACGCCCGCGCGGCAGGCGGCCGCTACGGGCACGCTGTTGCTCTCCAGCGCCTCAAGCAGCGTGGTGCCCACGCGGCCAAAGAAGGTTTGCGCAGGCTGCAGCTTGGTGAACCTGATGCCGCTGGTCGCCGCTTCCGCCACCGGGGTGAAGAACTGCTCTTTGTAGAAGCGCGTCACGCCCAGCGCCTTCACCTCTTTTTCCACGATATCCATATACGGAGCCGGGCCGCAGGTCAT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGCAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGGACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 100679-103117 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBJD02000015.1 Enterobacter sp. RIT 418 RIT418_S9_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 100679 28 100.0 33 ............................ AGAAGTCCTCAACTTTATCAAACATACCCTCAT 100740 28 100.0 32 ............................ CGCAAACCCTGCACGACAGATTTGAACAGCTA 100800 28 100.0 32 ............................ ACTGCGCAGCTGCTGAGCAGCGCAGCAGAAGA 100860 28 100.0 32 ............................ GACCGGAGACGTCATAGAGTCACCCTCTACAC 100920 28 100.0 32 ............................ GTGATGGGCAGCGTACTGATGAGCCTACGCCA 100980 28 100.0 32 ............................ AGAAAATATTCAGGCGCTTTTTGAGGCGTCAG 101040 28 100.0 33 ............................ AGCGCGATGCGCGCCAGCTCCAGTTCTTCCTCA 101101 28 100.0 32 ............................ TCCGTGAGGTGAAATAGAATGTTCAGGTGGTT 101161 28 100.0 33 ............................ CATGGAGCATTCAGCCGCAATAGCTGACTGGGA 101222 28 100.0 32 ............................ CGTTATTTTGCGTGCGGCGAATACGGATCAAA 101282 28 100.0 32 ............................ TATATTGGCTGGAGGTGGGCGGAGAATATGAG 101342 28 100.0 32 ............................ ACAGAGAGCGCCATTGATGCGCCGATTAAGCG 101402 28 100.0 32 ............................ TTTGATATAAGGCGCTTTGAACGTTTCTTTCG 101462 28 100.0 32 ............................ AATCACTGGAAAGCGACCTCTCCCCGGCTTAT 101522 28 100.0 32 ............................ TATCATTGTGCACGCTCCAGAAAGTCGTTAAC 101582 28 100.0 32 ............................ ACGTCGGCCGCCGTCGGTATATTCGGATCGTT 101642 28 100.0 33 ............................ AATATCAAGCACTACGGGCGGCGGCACCGGCTC 101703 28 100.0 33 ............................ TGACAGCGTGGTTAAACCAGAGGGCGAAGAAAT 101764 28 100.0 32 ............................ TAATGGTGGCGGTGTTGAGTGCGGTATTTCCA 101824 28 100.0 33 ............................ GAGCTACTCAAAGCGGCGTAATAAATTAAGGTT 101885 28 100.0 32 ............................ GGAAAACTACCCGCTTGAGAATGGCAAGTTAC 101945 28 100.0 33 ............................ TCGAAATTACTGATTAATAATTTCCGGTCTGTC 102006 28 100.0 33 ............................ GCTCGGGACACGTGTGATGTTGCTTGAATACGG 102067 28 100.0 33 ............................ GCTTGCGCATTACACCTTTACCCTGACTGATCC 102128 28 100.0 32 ............................ TATAAAGTCTCACCTTGAGGTTGTGGAGCATC 102188 28 100.0 32 ............................ TTTAATAACTTCTGCATTTTCGTACCCGGTTG 102248 28 100.0 32 ............................ AGGCGGCCAGCGATATGCTCGACGAAGTGATA 102308 28 100.0 33 ............................ GGAAAAAGAGTCAATTTTAAACGCCATTTTCTT 102369 28 100.0 32 ............................ GCGCGAACCGGTTCAAGGACATGGCGGGCATC 102429 28 100.0 32 ............................ AGCAACCACGGTCCCGAGAGGTTTATCAAGGC 102489 28 100.0 33 ............................ GACTGCCGGCTCGAGCGTGATCGGCAGGCTTAT 102550 28 96.4 33 ..................T......... CTGGCGCGCAGAGGGTGAGGTGCACGGCTACCG 102611 28 100.0 32 ............................ AGGCTGCTTCCGTTCACGGCGTAAATTATGGA 102671 28 100.0 32 ............................ GCTTGTCGCGGTGCCTCGCGAGGTGTCAGTAA 102731 28 100.0 32 ............................ AGAAAGTGCGGATTCTATTTTAGGTCGCGTTG 102791 28 100.0 32 ............................ CGGCGGCTCCATGAAACCGCCGTAGTGAATTT 102851 28 100.0 32 ............................ GGCAACAGCCGGGTAAATGTTTCTTGCTTAAG 102911 28 100.0 32 ............................ AGAAAATTTCGCCGCGCTACACGTGGCAATGT 102971 28 100.0 32 ............................ CGAAAGTCGTCACCGGCGCGGAGGATGCCAGC 103031 28 100.0 32 ............................ ACATTGCAGACGGCACCGGCACCACCGATGAA 103091 27 85.7 0 ....................-.C.AT.. | ========== ====== ====== ====== ============================ ================================= ================== 41 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCAATTCGCTGCCGCAAACGCAGCCTGTATGCCGCTGCCTCGGTGCCTATCTGGATGCAGTGAAGGAAGGGCTTGCGGAATCGATGAGCGATTTTCGCGTCGTGGAATTTGAAGACGAGCAGCCGCAGCACAAGGAGTGGCTGCTGGATGATACGGAAACGAAGTGCGATTACTGCCGCGCGCTCAATCACGTCCTGCTGATTTCGCATTTTGACCGCGACATGCTCCCGCATCTGACGGGCCTGCTGCATGACATTACGCACTCAATGGCTGATGACATGGTTGTGCCTCGTTGCCAAAACACGGTTGTGCATCTTATTCCCTGACGTGAAAGAGTTTGTCAGGACGTAAACTGACGCATAACTGCGGAACCCTTTTTTTGAATGCCTTTCTAAGTTATTGATTTATGAATAATGAAATTAATGGCTGGAAAAAAGGGTTCAGACAGAGAAAGTTGATTTTTTTCTTTTAGAACAATAGGGTATTGTTGTTTTCTTCCA # Right flank : ACAAATTAATCAAGGAAAAGATATGAAGATTCTTAAATCCTTATTAGGTTTATGGTTAATAAGTTTGGGAAACAAGACTGAGGACCTGTCAGTCGTAAAACTATATGGAAGACCATTATGGCTTTAAATGGAACTATGATGCTTAACGGTGCTGACTACGCGCCCTTTAACCTCTTTGGTGTTGGCGTGTTCATGGCCCATTCTGGGAAAGGAGCCTACCGTAACAGCGGCTCTTGTGGTGCAATAAAAGGTGCGGGTCCAATTCCCCCGGGTAAATACTGGATTGTTGATCGTGGCACAGGAGGGGTCTTTTCAGGATTGAAAGCTAAGGCGCAAGATCAGTGGAACAAAATCAGATTTGGGGCTGAATTTGGACGTGATGAATGGTTTGCCTTGTATAAGGATGATTGGGGAATAGATGATGGCACCTGGATTGAAAACGTCTACCGTGGATTGTTCAGACTTCATCCCGGAACGGTGTCAGAAGGTTGTATAACGAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //