Array 1 500-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIMFD010000024.1 Streptococcus gallolyticus strain BSJ27 BSJ27_Scaffold24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 499 36 100.0 30 .................................... CTGGTAGTCGTACTGGTTGCGATAGTAATC 433 36 100.0 30 .................................... ATTGCCGAGTATGCCCACTGATGGTCCTTC 367 36 100.0 30 .................................... TAGCCAAATTGATGCATATTTGCGACTATC 301 36 100.0 30 .................................... TCCGCAAGTTCAAAAAAAGACCTCTTTTGA 235 36 100.0 30 .................................... TGTCTATCTGAACCGTCAAAAAGACAAGGA 169 36 100.0 30 .................................... CTTTCAAATGTAGCAAAGACAGTTATTGGT 103 36 100.0 30 .................................... CTATACGGAAAGGATGGTGGTTAGATGGCT 37 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTTTTAGAGCTATGTTGTTTCGAATGGTCCCAAAAC # Left flank : ACGGAATTGATCGCTTTTGAGTGTTTAGAAAATGAATTGGATTTAGAATATGATGAGATTACTATTTTAGAGCTCATTAAAGCACTTGGTGTGAAGATTGAAACGCAGAGTGATACTATTTTTGAAAAATGTTTTGAAATTTTACAGATTTATAAGTATCTGAGTAAAAAGAAATTGCTTGTATTTGTCAATTGCGGTGCCTATCTGACTCATCATGAGCTAGAAAAATTATTTGAATATATTCGTTTGTCAAATCAAACTGTTCTTTTTTTAGAACCAAGAAAACTATATGATTTTCCTCAATTCATTTTGGATACAGATTATTTTCTATTAACAAATGGGGAATAGGTGGAGTAGCTTGGTAGAAACGTTGATATATTCGCGTTTTTGCGGTACAATATATAAGATAGAATGATAAAAAATGGAATCGTTCGAAGCTGAAATCTGGCTGAGATGAATGGCGCGATTACGAAATTTCGTGATGAAAAATGGTCCACGAG # Right flank : CT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTCGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 4094-3859 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIMFD010000041.1 Streptococcus gallolyticus strain BSJ27 BSJ27_Scaffold41, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 4093 36 100.0 30 .................................... TTCGTATTTCTGGCTAAACCATGAACTTAA 4027 36 100.0 31 .................................... CCCCCTACCGTGATGATTGTCCGCTTGGTCT 3960 36 100.0 30 .................................... GTCGAGATTTCTTTTACTATTGTCGGTTAA 3894 36 88.9 0 ...............................CC.CA | ========== ====== ====== ====== ==================================== =============================== ================== 4 36 97.2 31 GTTTTAGAGCTATGTTGTTTCGAATGGTCCCAAAAC # Left flank : | # Right flank : TTTTCTCCCACTTCTAATCTTAGTTGCTCTCTCATCTGAAATTCTGTGCTATAATAATATATAAGTAAACCAAGGTGGATATATGATGGATAAAAGGCTCTACTGGTTAGCGGCAACCGTTTTTTTGGCGACGGGAGTGGCTATGGCAGGTGTTTCTTATATAGGAAGTTATGGGATGACGCTCTTGTCAGAAGTGACTTCGGATGTAGATGATAATCAGAAAAAGATTATACTTGAACATGATAAGGCGGCCTCTAATAGTGATGAGGTAGTGATACATGGTAAGGATATTGAGATTACAGCTGGAGGAGAATTCTATATTTCGGGGATTGGAAAAGAAGTCTCTATTCAGGTTGCAGAGCAAGTGACAGATGATGTTACCTTAGTTCTAGATGGAGTAGATATGGCTTCTATTTCCATGCAATCGCGAGGGACTAATATTGTCCGACTGGAAAAAAATTCTAAAAATAGCTTGTCTAATGTTGAGACGGGGATCACAG # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTCGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.06%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //