Array 1 766412-767305 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040422.1 Dolosigranulum pigrum strain KPL3050 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 766412 36 100.0 30 .................................... TGATTAGCTTACTTATTGTTAGGTTGAGAT 766478 36 100.0 30 .................................... ACAGCGGAGCTTGAGAAGTATCTGAATGGG 766544 36 100.0 30 .................................... GTGAGCAGAAGCGATTTGACTTATCGCTTT 766610 36 100.0 30 .................................... AATTGACGTTGGTGTGATGAGTGGCTTAAT 766676 36 100.0 30 .................................... GAATATATTAAAACATCAGGACAGGGGTAA 766742 36 100.0 30 .................................... GTCAGACCTCGTCAAGCCATCCATAGCTTT 766808 36 100.0 30 .................................... GTTGACAACTAAATTTAGATCTGATATACT 766874 36 100.0 30 .................................... TGATCGCCTGCTTTTGTTATCGTCTTCATC 766940 36 100.0 30 .................................... TACAACGCTGCTCTCCCATAAATTCGCACG 767006 36 100.0 30 .................................... TCGCCTAAATCTAAACCGTCAATATCTCCA 767072 36 100.0 30 .................................... GGATGTTATTTTTGAACCGTGTCTACCAGC 767138 36 100.0 30 .................................... AATCGTTAAAGAAGTACAGCGCGGTATTCG 767204 36 100.0 30 .................................... TCGCCTAATGCTTCATTAAAGCCGTCAATT 767270 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 100.0 30 GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC # Left flank : ACTAATCAAATTACTGAACTGATTAATGCAGAGGTACTGAATCATGAATTAGATTTAGAACTTGATGAAATTACAATCCAGGAAGTACTTATCGCTTTAGGAGTGAAGATAGAAGTTGATACAGATACACTATTTGAAAAGATGTTGGAAATTTTTCAAGTCTTTAAATATTTGCGAAACAAAAAGTTACTGATACTTGTAAATACAGCTTCATATTTTACAACCGAGGAGCTTAATGAAATGGCACAGTTTGTCTCATTGTTACAGATGAATGTGCTGATGATCGAACCAAAACTGACTGATGCCAATATTACACAATATATCCTGGATTCGGACTTCTTTTTAACCATCAAACATGGTAAAATGAAGTAGAAGATAAACTAGAAAAATAGGAGTCGTTTAAAGCTGAAGTTTTGCATGGACGAATGGCGCGATTACGAAATTTTGTGCAAATTTCTTTTTAAAAACCATGATTTTTTAGAAAAGAAATACTGTGCGAG # Right flank : CTTGTCCTAGCAGAATACTAGCTGATGTCTGTGAGCTAATTTAGCAGATGATCCCCTTGCTAGACTATGAACTGACTGCTCTTGACGTCGATACACGCGATTAAAAACTGAAAAATTGGATAAAAAAAGAAAAAAAGAAGGCGTTTAAAAAAAGGGGTGTTTTTTTATGATCAAGCTTTTTTTTAGGAGTTTGACATAACCCAATAAAAAACAGGACTAAGACCAACTGAAAAGTTGGAAAGAAAAAAGACCCAACGCTAAAAGTGCGCTGAGCCTTGTGGTAAAAGCTTTTCTATTCATTTTCTGAGTTTGTCATATTTAGCATTAAGACAAACTGCCACTTTAAAAATTATAAGCTATCCAGCGACGCATAATACTAATAATGCACAATATCGACTACCAATTTTATTTTCTATACTTTATGAATATGGAATTTGCTACATAATTTAATTTTTATCTCTACAGTCCTTTTAGATATTTAAAAATTAAGGCTTGGCTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 769204-770428 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040422.1 Dolosigranulum pigrum strain KPL3050 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 769204 36 100.0 30 .................................... TGATTAGCTTACTTATTGTTAGGTTGAGAT 769270 36 100.0 30 .................................... ACAGCGGAGCTTGAGAAGTATCTGAATGGG 769336 36 100.0 30 .................................... GTGAGCAGAAGCGATTTGACTTATCGCTTT 769402 36 100.0 30 .................................... GTGAGCAGAAGCGATTTGACTTATCGCTTT 769468 36 100.0 30 .................................... AATTGACGTTGGTGTGATGAGTGGCTTAAT 769534 36 100.0 30 .................................... GAATATATTAAAACATCAGGACAGGGGTAA 769600 36 100.0 30 .................................... GTCAGACCTCGTCAAGCCATCCATAGCTTT 769666 36 100.0 30 .................................... GTTGACAACTAAATTTAGATCTGATATACT 769732 36 100.0 30 .................................... TTTTATTCTTCGAATTAGTCATGCTATAAT 769798 36 100.0 30 .................................... TGATCGCCTGCTTTTGTTATCGTCTTCATC 769864 36 100.0 30 .................................... AAAAACTAGTTGACAACTTATGATTATAAT 769930 36 100.0 30 .................................... TTTCTTGTCAAGTACTTTTCTAAAATTTAT 769996 36 100.0 30 .................................... CTTGAAGAGATATTCACTTTGGATTGGCGT 770062 36 100.0 30 .................................... TTCCGTATCCACGTCTTTCGTGTCATCGAT 770128 36 100.0 30 .................................... TCGCCTAATGCTTCATTAAAGCCGTCAATT 770194 36 100.0 30 .................................... CTTGAAGAGATATTCACTTTGGATTGGCGT 770260 36 100.0 31 .................................... AATCTTTTACGTGTATAATAAGTGTGCAAAT 770327 36 100.0 30 .................................... AGTCAATTAATCGATATGGAATTATTCGAT 770393 36 91.7 0 ..............................T...TT | ========== ====== ====== ====== ==================================== =============================== ================== 19 36 99.6 30 GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC # Left flank : ATCAACTTTATCAGGCTATAAAATATGCGAAAATAAATAAAAATAATATGAATGATATAAGTTTTGAACAGTTTTTATCATTGTTTAATAGCTATAAATTGTTTAATGGATAAATCTAAAGGACTGCCTGAAAGCAGTCCTTTAGATTTATTTGTTGCATATAATACTACTAATGTTCATCAATTTTCAGTATTGAGTTTTACTCAATTCTTATTGTGACAAACTCATTTTCCCTTAAGTTTTTTAAAGCGTTCTAAACTTTTCTTAAATTTTATTTGAGCTTCTTCTGACATTGTATCATCAGTTTTCACTGGATCAGATGCCCACTCAGGCAAGTTTTCAATTTTTCTCTTACGTTTTTTATATTTATATTTCTTCGCCAGTCATAAAATTAATCATTGGTACTGGATTCGGATCTTCGTATTCTTTAAACCGAATAACGAAGCGTTGAATTTTATTTCCTTTTTTTGCTTTGATTTTTTCAATCGAAAGTTCATCAA # Right flank : TGATTGGTCAGATAACTTATGAGATTTAAAGTTATAGTGTATTGATTTTTGATGTAATAATTATTAATGAAACATATAATCCTGTTTAATCTTCTAGTCAAACTAGCTAATTAGATAGGATTTTTGTTTATTCAGGAGACAAGCTACTTGTGAAGTATTTCCCGTGATTATCAGTCGAAATTGTGGTGGGAATATGCGATAATGTAGAGCAAGGAGTGATGGCTGTGAGTAAGGAATTGTTAGTATTGATTGATTATGAAGTGGATGTATTAGAGACGTTTCGAGAGATAGCTAGTGAGTATCAGTTGGTGAGTGAGTTTGAGGAAGCTGATTTTTCGAAGGTTGAGATCGTATTGGGGTGGGATGAGCGGTTAGTTGAAGTGCTTGAGTCGGGTGAACATCAATTGAAGTGGATTCAACTGCCAACAGCTGGCGTGGACAAGTTGCCACTTGATTTACTGGCGCAAGAAGGGGTGCGGTTGACTTCAGCAAGCGGGATG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.50,-2.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //