Array 1 815095-813802 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJKZ01000018.1 Cronobacter dublinensis subsp. dublinensis LMG 23823 cddub187_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 815094 29 100.0 32 ............................. GGATTACCAGTCATCCAGTTGTAAAACAGGCG 815033 29 100.0 32 ............................. CGTTTGTATAGCGAGTTCGGATACCCGCTTGA 814972 29 100.0 32 ............................. TGCGCATTTGTGTAAGCCAGGCTTTGCTGGAT 814911 29 100.0 32 ............................. ATGGCTGGTTGATGCAAAGTCCAGCCATCATG 814850 29 100.0 32 ............................. TGACCATATAACGGACCTTTGTCGGCATTACC 814789 29 100.0 32 ............................. GTTGATAATGAGTCGTCAGAGAATACTTCTTC 814728 29 100.0 32 ............................. TTACGTCGTGTTGTGCAGCAGTACCGAATTCG 814667 29 100.0 32 ............................. GCGATAAATACCCTGGCTGTAACGCCAGGTGC 814606 29 100.0 32 ............................. GATAAGCTCCCACGTCGCGAAAAGGCCCGGGG 814545 29 100.0 32 ............................. AGTTCTATTCTGGAGGGCGCGGGCGTCGGGCA 814484 29 100.0 32 ............................. GTGCGATTAGTGAACTTCCCTGAGCTTAGTGA 814423 29 100.0 32 ............................. CACCACGTGAGTGGAGCCTTGACCGCCGTGAG 814362 29 100.0 32 ............................. GACCCGCGCGCCGCTACCAGCTCAATCGTAGT 814301 29 100.0 32 ............................. TATTCTTTCCCGCCAGCATCAAAATCGGCTTT 814240 29 100.0 32 ............................. ATGGAAGGACTCAAACCGTATACCCGACAGAC 814179 29 100.0 32 ............................. GTCTGTCCGCCAAATTTGGTGCCGTCAGGTAA 814118 29 100.0 32 ............................. ACAGATCACAAAAATAACGAGTACGGATTTGT 814057 29 100.0 32 ............................. CGATTCATTGAGTTGAGCGGCACCCAAGACGG 813996 29 69.0 13 .................ACAACGTC..G. CGCTGGAGGCGGA Deletion [813955] 813954 29 100.0 32 ............................. TCGATTCTCTCAACTCTCAGTTTGCAGCCAAC 813893 29 100.0 32 ............................. GATCGTGTCGTAAAGGGTTAATTCCATATTTC G [813872] 813831 29 86.2 0 ............T.......A.G.....T | G [813807] ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.0 31 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GAGGTGCTGGCGGCCGGCGACATCGAACCGCCGCAGCCCGCGGCGGATATGCTGCCGCCTGCTATTCCACTGGCGGATTCGCTGGCTGAAGCGGGCTTCAGGAGCCGCTAATGAGCATGCTGATGGTTGTCACCGAAAACGTGCCGCCGAGACTGCGCGGGCGGCTCGCTATCTGGCTGCTTGAACTGCGCGCCGGGGTTTATGTCGGCGACGTCTCGAAGCGGGTACGTGAAATGATCTGGCATCAGATAACCGAGCTCGCGGAAGAGGGCAATGTCGCGATGGCCTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTATGGCGTTAACCGACGTATTCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCATTTTTACCCCTTCAGAATCAGTAGGTTAACTGCTCTTTAAAAATATGGAGATGTAATAAAAAAGTTGGTGGATTGTTGGGTGTGAAAAATTTCCATATAGAACAGTGATATAGTTTTAGA # Right flank : TTGGAATAATTCAAACGAAGGTTTAGATTCTTCGGGAACTAGAGTTGTGGTTATTTTTTATAAATATGATAAAACTTCTTAAAATAGCTAATTTTTATTTTAGTTAATGGCTTTTAAAGCTTTATTACAATGTTTTTTTCGAAAATCATATAGTATCCCCTGATCATTTTTTTAAAATTAAATTTTATATGGCATGGGGTAAATATGCGGCGATAAGACACGTGCGTGATCGTGCTTATAGCCAAAGTCATCATAAATGCGAACTCTTTGTTAAAGAGGCTATTATTGCGGGTGGAGTAAATATCTATCCCACACCCTCAGCAAAAGATATGGGCAAGGCGTTGATAAAACCAGGGTTTTATGAGGTTTATGGCGAGCCTGTTGCTGGTGATGTGGCGGTGATCCAGGCAATACCCGGCCATCCTGATGGCCATGCATGCATTTATGATGGGCAAATTTGGATAAGCGATTTTCGACAAAAAACGCTCTACCCCGCAGAG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 842551-841546 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJKZ01000018.1 Cronobacter dublinensis subsp. dublinensis LMG 23823 cddub187_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 842550 29 100.0 32 ............................. CGTCACGTACCGGCATTCAGACATACCTCGCC 842489 29 100.0 32 ............................. GCCTGTTAACGGTGACCGAGAATGGCTGAGAT 842428 29 96.6 32 ............................C CCGTCGTTCTCGCCGTGAATAACAAAAATGGC 842367 29 100.0 32 ............................. TTTCCGCTTTCGTCGGCAGGCGCATTAAGCAG 842306 29 100.0 32 ............................. ATGCTTACTCTCCAGCGCTGGGCGGCGGAAAT 842245 29 100.0 32 ............................. CGCGTCACCATACCCGCCAAAACAACTGTACA 842184 29 100.0 32 ............................. CTGACTGTGAGTTAACAAAGTCAGTCATGTAT 842123 29 100.0 32 ............................. ATTTCGATTCTGGTAGCCATATCTCACCAAAT 842062 29 96.6 32 ............................T TCCTGCTACCGCCTTTCGCTATAATTGCCACC 842001 29 100.0 32 ............................. ATGATATAGGTTAACCTATAATTTATTTCATC 841940 29 100.0 32 ............................. TGGCGGATAATCGCGCGCTGGTCAGCCTTGCT 841879 29 100.0 32 ............................. ATTTTTAGCGGTACTGACGGAATTAAGTTTGA 841818 29 100.0 32 ............................. AGCGCGCGGGCTTTCAATCAGCCGCTGCTGCT 841757 29 100.0 32 ............................. CCAGGGTAGTTTTTCACCCGATACCATAAAAT 841696 29 100.0 32 ............................. CGAATAAATTGCTAACCATGCTGCGCCTGACC 841635 29 100.0 32 ............................. CAAGAGCGATATTGGTTACCTGGCTCATACTG 841574 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACGAAAGCTTTAAATGGATGATGGCGCACAACATCGCCTTTATTGTCGTCAATATCAACATCAACTATCGCCGTCCTGCGGTGCTTGGCGACATGCTGACCATCACCAGCGAGATGAAACAGCTCAATGGTAAAAGCGGGGTGCTGAACCAGGTGATTACGCTGGGGCCCGAAGACGGGGTGGTCGCCGACGCGCTCATCACGTTCGTGTGTGTCGATCTTAAAACCCAGAAAGCGCTGCCGATTGAAGGCGAACTGCGCGAAAAACTGGAAAATATCACAGGGTAAATTCTGCAATCACGCTGCCTGTGCGTGTAGTCATGGACTTCCACTTACCGAAAGCGAACAATCCGGTAGATGTTATCGGCTCGAAAGCACGCTGAAAAAAGGCTTTTAAAATCAACAGGGCAGCCGCTCTTTAACAAGATGGGTTGTGAAGTAAATGTTGGTAGAATGTTGGGGTCGATAAAATTTTAAAGAAAACAGCAGGTTGTTTTTAGA # Right flank : AACCCGTTCGCCGCGGCGCAAAAAACGCATCTCTGTCACTCGTGCCAGCCCGAATATCCAGCTAACCACCCGCCAGGGCAATCCCTCCCAAACCCCATATTCTTCAGCAGCGTTTATACTTCAAAGCCAACATGAAATTTCGCAACACTGCGCAACGAAGGAGAGGCTATGCGGGTACACCATCTTAACTGCGGTTGTATGTGTCCTTTTGGCGGCGCGCTGTATGACGGCTTCAGCAAAGGGTTGCACGCGCATCTGATTTGCCACTGTCTGCTGATTGAAACTCAAAATAACGGACTGGTGCTGGTGGATACTGGCTTCGGCTGCGACGATATGCGCCATCCTGGCCGTCGTTTGCCCCTCTTTTTCCGGGCGCTGAATAACATTCAGTATCGCGAATCATTAACGGCGCTGCATCATATTAAGTCGCTCGGTTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGCGGCAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //