Array 1 215103-212938 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCQF01000011.1 Salmonella enterica strain ARS-CC273 NODE_1_length_654705_cov_112.543_ID_13974, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 215102 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 215041 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 214980 29 100.0 32 ............................. GCATTGATGTAACACTCCTTAACTGCGGCGGC 214919 29 100.0 32 ............................. CGGTCTGTAGTCGCATGGCACGTCCTTCGGGG 214858 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 214797 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 214736 29 100.0 32 ............................. ACCATGCATTGAAATGCCAGATGAAAATTGGG 214675 29 100.0 32 ............................. CTGCGGGTATCAAAGCGTTCAACGTTCTTGTC 214614 29 100.0 32 ............................. TTTCTGACTTTTGAGGGGGATATTTAGACGGG 214553 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 214492 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 214431 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 214370 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 214309 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 214248 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 214187 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 214126 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 214065 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 214004 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 213943 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 213882 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 213821 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 213760 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 213699 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 213638 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 213577 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 213516 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 213455 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 213394 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 213333 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 213272 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 213211 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 213150 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 213089 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 213028 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 212967 29 100.0 0 ............................. | A [212940] ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 235021-232735 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCQF01000011.1 Salmonella enterica strain ARS-CC273 NODE_1_length_654705_cov_112.543_ID_13974, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 235020 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 234959 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 234898 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 234837 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 234775 29 100.0 32 ............................. CCTTTCGTGTCGTCTGCCTCGCTGGTTACCGT 234714 29 100.0 32 ............................. CCTCGCATAAACGAGGCTCGCTCTGAATCTGG 234653 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 234592 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 234531 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 234470 29 100.0 32 ............................. TCTCGCAAACATCCTTCAGGCAAAACCACGGT 234409 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 234348 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 234287 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 234226 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 234165 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 234104 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 234043 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 233982 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 233921 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 233860 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 233799 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 233738 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 233677 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 233616 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 233555 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 233494 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 233433 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 233372 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 233311 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 233250 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 233189 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 233128 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 233067 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 233006 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 232945 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 232884 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 232823 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 232762 28 79.3 0 ..G............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 38 29 97.8 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //