Array 1 2729-2089 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLSC01000144.1 Candidatus Hakubanella thermoalkaliphilus strain S44 HKBW3S44_000000000144, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 2728 37 100.0 39 ..................................... CTCTCAAGCTGCTCCATTACCGCTAACAGCTCTTCACAC 2652 37 100.0 37 ..................................... CTCGTTTCACGAACTCCGGGAAACTATTTTATTATTT 2578 37 97.3 39 G.................................... CTTACACTTGGGACAGATGCGGACTTCTTCTTGGTGTGT 2502 37 97.3 38 G.................................... GGAGGCTAACCATGCCTAATAGCTATATGGGTCAAACC 2427 37 100.0 40 ..................................... AGTGCGAAAGAAGGGTTGTAAGCGTAACGGGTTCGAGCCC 2350 37 100.0 42 ..................................... AGTTGTTGTAGGCAAACAGCTTCCCTACGACAGGGCGGACGG 2271 37 100.0 35 ..................................... TGGTTATTCATGGAGTACAGCCTCCCGTCATACTC 2199 37 100.0 37 ..................................... CGGATGAGCGCCTCCCCCAGCGGGTCTTTTAGATTGG 2125 37 94.6 0 G...........................A........ | ========== ====== ====== ====== ===================================== ========================================== ================== 9 37 98.8 38 ATGAGAAAGGAGACCGATACCTAAGAGGGATTGAAAC # Left flank : GCTACATAAGTTACAATATTTCAGGCACATGCCCGAAAATAATGAATAAAAACCTATTCAAAGCCTATTATATTGGGCTGC # Right flank : TTATTCTGCTTTTCTTGCAGGGCAAGATCTTCAGCAAAAATAGTCCTCTGGAAAGATGCCGAAATTCATGAAAAAGAGGCAAAGAGGGGAAACAGGAAATTGGGTGCCAAGACATGAATGATAGTAAATATCACAAAAACCTACAGAGGTTACCAAAATTTTGAGCGTGCCCAGCGAGGAGACGTTGACATGTTGGGAAGCTTTGTGGTCCGGGTGCGGCCAACGAAAAGCGTCTGTTATCAGTATTCCACAGGCAGACCTCTGCATGGTCTCTTTTTGCATCTTATAGAGAGAGTAAAATCGTCCTCTGGCTCGGGAACTTCATGATGCTAAAGGGCAAAAACCATTTACCGTCTCTCCTCTGTTCGGGCATTTCCTGACCGAATCAGGGGCAAAAAGGGCGGTAGAGGAAGAGGAGTATTGGTTCCGATTTACAGCACTAACCGAAGAGTGTTGTGAGGCCTTGGTGAGGGTTTTCTATGGAGAGGCTATTGCCAATG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGAGAAAGGAGACCGATACCTAAGAGGGATTGAAAC # Alternate repeat : GTGAGAAAGGAGACCGATACCTAAGAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 1413-2056 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLSC01000177.1 Candidatus Hakubanella thermoalkaliphilus strain S44 HKBW3S44_000000000177, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 1413 37 100.0 37 ..................................... GGGTGGGGCAATTTGAGTATGACAGTATCCCAGGTAG 1487 37 100.0 39 ..................................... TTCAGTAATCCACTTTTTTCTATTTCGGAAATCACGAAG 1563 37 100.0 39 ..................................... AGTTCTCTTCTGTTACACGAGACAATTCGTTCTTGCTCC 1639 37 97.3 40 .........T........................... CAACTTTCCAAGATTCAATCGCCAAGAACTACCAGAGGAC 1716 37 100.0 40 ..................................... CAATCTCAATTATCTCAATAAGAACTTGGATCTGATCACC 1793 37 100.0 43 ..................................... TCCCAGTAGATCCGTGGATCATCAGGATTCGCGCGATATTTCA 1873 37 100.0 35 ..................................... ATCAGATACCGGAGATACTGGTTGCGGTTGCGGCT 1945 37 100.0 38 ..................................... GCTCTCACCTTGGGAACATCAGCCTCAGGGATGTCTAC 2020 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 9 37 99.7 39 ATGAGAAAGGAGACCGATACCTAAGAGGGATTGAAAC # Left flank : GAGAAAGAGCTCGAGTCTTTATAACGTTGAGGTGACCAGGGATATAGGATGAGGCAAGAATCTTGATATTAGAAAGGAAGGTAGTAAATTAAAGATGCCAGAACTAACCAAAGGTGCAAAGGAGGTTTATGAGAATTTGATGGTTGGCTTTGGTTGGGTTGGAATAGAAAGAATAAAGGTTCTTCTCCAAAAATAGTGGGTAAGAACCAGAATAGATGCGGACAACAATCTGGAGTTCCTTTGACACATAAAAGAATATATGCAAACTTTCTGAATTTTATCTGTATATTTCTCGTCGCCTTGCGGGCTTCTTGCCAATTTACAAAACACCTGGTCAACGCGGTAGATGCCCGCAAGATGATAATGCCTGATAGGAGTACATTTGGCAGTACAGAGAGGGGCAAAAACCCGATGTTGTGCTACATAAGTTACAATATTTCAGGCACATGCCCGAAAATAATGAATAAAAACCTGTTCCAAGCCTATTATATTGGGCTGCT # Right flank : | # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGAGAAAGGAGACCGATACCTAAGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 585-160 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLSC01000412.1 Candidatus Hakubanella thermoalkaliphilus strain S44 HKBW3S44_000000000412, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 584 37 100.0 43 ..................................... ACAAAATAATATCGCCCCCCCTTACCCTATTTACAACGTAGTC 504 37 100.0 38 ..................................... CCTGTTATCTTATCTCTCCTTATTTGGGCTTTTAGAAT 429 37 97.3 43 .............T....................... AGTACGGCTTCCTGAACCCGCGGACCACCGCGATGGGCCACTC 349 37 97.3 40 .............T....................... TTCACCGTGCCGGGCAATGATCGGTGCCAGCGAGGCTACT 272 37 100.0 39 ..................................... TCTACAGTCCAGAGGGCTGTAGTATAGCCAAGTTCTTGG 196 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 6 37 99.1 41 ATGAGAAAGGAGACCGATACCTAAGAGGGATTGAAAC # Left flank : AGCCTCAGGGATGTCTA # Right flank : CTTATTCTGCTTTTCTTGCAGGGCAAGATCTTCAGCAAAAATAGTCCTCTGGAAAGATGCCGAAATTCATGAAAAAGAGGCAAAGAGGGGAAACAGGAAATTGGGTGCCAAGACATGAATGATAGTAAATATCAGAAAAATCTAGAGAGTTTACCAAAAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGAGAAAGGAGACCGATACCTAAGAGGGATTGAAAC # Alternate repeat : ATGAGAAAGGAGATCGATACCTAAGAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 1 83-492 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLSC01000471.1 Candidatus Hakubanella thermoalkaliphilus strain S44 HKBW3S44_000000000471, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 83 37 100.0 38 ..................................... TAAGAGATTCGAACTCTCAAGTCTTCAAGGTTCAGAAC 158 37 100.0 39 ..................................... GGCATGAAAACAACAGGCTGAAACGAAAGATAGTTTCCC 234 37 100.0 36 ..................................... CCTCCGTTCCTCAGGGTTAACCGACTTGAATACACC 307 37 100.0 38 ..................................... TGGACATAGCGTTTCCCCTAACAACACACTTTTTTATA 382 37 100.0 37 ..................................... ATTATCTATATGGAGCAGGAGCCGGGCTCGGCCGGGG 456 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 6 37 100.0 38 ATGAGAAAGGAGACTGATACCTAAGAGGGATTGAAAC # Left flank : GCTACATAAGTTACAATATTTCAGGCACATGCCCGAAAATAATGAATAAAAACCTACTCAAGGCCTATTATATTGGGCTGCCA # Right flank : CTTGCAAAGCTCGCGGATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGAGAAAGGAGACTGATACCTAAGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA //