Array 1 9099-5213 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMXH010000011.1 Clostridium perfringens strain 1001175B_160314_F9 NODE_11_length_58562_cov_48.7339, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 9098 29 100.0 37 ............................. GTTGTTCAAGTTTCAAATGTTAAATTTATTAAAAAAA 9032 29 100.0 37 ............................. AAGGATATATTATTATAGTTGCTATAGTTATTATTTT 8966 29 100.0 36 ............................. GAAGATTTTATAAATATAGTAGCAGATGCTGAAATA 8901 29 100.0 36 ............................. ATTTGAAAGAGAACAAGAACGATGGATAATATTTAA 8836 29 100.0 36 ............................. TGCAAAAACACATGGTTTATCATACTCTTCTAAAAG 8771 29 100.0 36 ............................. TCGTAACTTAAAGATTGATTACTTTTAAGTCCATTC 8706 29 100.0 36 ............................. GAAGGATAGTGTCCAAATAATGCAGTTACAGAACCA 8641 29 100.0 37 ............................. CAGAAATAAAGACCATATCCAACTAGTTTATAAAACT 8575 29 100.0 37 ............................. ACCAATCAACTCCTAATGGAGCTTTTGTCTTTGCTAC 8509 29 100.0 36 ............................. AGAATTTTTACATTAAACATAGTCCTTTGGTTCTTA 8444 29 100.0 36 ............................. TAATCAAGTTGGGCGACAAGTGTATCAAGAACCAAA 8379 29 100.0 35 ............................. TGTCATAACAAATATTACCGTCATTATCTAAACCA 8315 29 100.0 36 ............................. ATCTTTAAAAAAGACTTAAAATCTTCTTTATAAGGA 8250 29 100.0 36 ............................. AAGAGAAATCTTAGGTATTCTTACATATTGGAGGTG 8185 29 100.0 38 ............................. AGGAGAAGGCTTAGAAGCACTTTCCAAAGCTAACTTGT 8118 29 100.0 36 ............................. TATAAAATCACTTTGTATAAAAGAATACTTTTTACG 8053 29 100.0 37 ............................. TTTGAAAAAATGCAAGGTTTGAATAGGAAAGTTAGAG 7987 29 100.0 37 ............................. TTAGTTCCAGTTATAGAACAAGAACTTGCACCAATTA 7921 29 100.0 37 ............................. TTAATTTTGTACAGCGAAATGACTACACCAGTGGAAC 7855 29 100.0 37 ............................. CTAGTTCTTTCACTTTCAAGGAATGCAGCATTTCTCT 7789 29 100.0 36 ............................. ACGACTATCGAAAGGATATCTATAAAATAGTATTTA 7724 29 100.0 39 ............................. ATGTGTGGTGGAGTTCTAAAGATGTTAATATAAAAGAGT 7656 29 100.0 36 ............................. CTTTGTATCACTCCCATATATTGTAATTTATTTACT 7591 29 100.0 37 ............................. TCTTAATGGGGAAGGAGAAAATGAGATGGTTGAATTA 7525 29 100.0 36 ............................. CGTGGGTATAATTGCAATAGTTTTTAAAAAGTTTTT 7460 29 100.0 37 ............................. TCTTAATGGGGAAGGAGAAAATGAGATGGTTGAATTA 7394 29 100.0 36 ............................. CGTGGGTATAATTGCAATAGTTTTTAAAAAGTTTTT 7329 29 100.0 37 ............................. TCTTAATGGGGAAGGAGAAAATGAGATGGTTGAATTA 7263 29 100.0 37 ............................. TTTTCTAAAGTGTCATAGTCATAATCATCTCTTTCAG 7197 29 100.0 35 ............................. TTATGTAACTAAGATTACAACTTTTATGAAATGGT 7133 29 100.0 36 ............................. TTTAATTGATATTTAGTAGTTTCATACTCTGCTTGT 7068 29 100.0 36 ............................. CTTCAAAAATTCAAATATTTTCAAAATTAACACCTC 7003 29 100.0 36 ............................. GCGCAAATAATAACATCTAAGGAAGCTTATATGAAA 6938 29 100.0 35 ............................. CAAGTTTCTTGTATTATTAATTACAATTAGATATT 6874 29 100.0 35 ............................. TTAGTTATACTGGTAATTATCTTACTTGCAACCTC 6810 29 100.0 37 ............................. CGGTATTTTCTTTTAAAAACTCTTTTAGTTGTTTCAA 6744 29 100.0 36 ............................. TAAGTACATAGATAAGATTTTGTACTGCTTCAACAT 6679 29 100.0 37 ............................. AGCTAGAGGAACCTTATAAAAGTACTCTAGAAGGTTC 6613 29 100.0 36 ............................. AACAAGGTAGCTACACCAGAAATGAAGTTACTTCAT 6548 29 100.0 36 ............................. TATAATAAGAATGTGCAATAAAGAAAGATTATTTAA 6483 29 100.0 37 ............................. AGTGATAGAGTTAAACCTAATAAGATTTTTTTTGTTA 6417 29 100.0 37 ............................. GAATTTATTTATACTTTTACTATAATGGGTACTACTG 6351 29 100.0 37 ............................. TGAAAGAAGGAAAATACTACTTAATAAAAGGCCTTCA 6285 29 100.0 35 ............................. GTAGGAGATATATAAGAAGTACCACGAATAAAAAA 6221 29 100.0 36 ............................. TTAGAAGAATTTAAAGCAAGCTTAAATTTAAATCCT 6156 29 100.0 37 ............................. TAGGATATTTATCCTCATTTATTACATACTTTTTATA 6090 29 100.0 36 ............................. GCTATAGATTCATTTTCTACTATAGCTTGGGTAACT 6025 29 100.0 36 ............................. ACAAAATATTCTGATGAATAAGACATATCTCCTTGA 5960 29 100.0 37 ............................. CATCCATACTTCCAGTAACAGTTGTCACAAATAGCAA 5894 29 100.0 36 ............................. TTTCTCTACTCAAAAATAGTATAATGGTTTTAGGGG 5829 29 100.0 36 ............................. GAAAGATTACCAGTCAGTAGGAGCTATCATTTGTGG 5764 29 100.0 36 ............................. ATACAAGAATCTGAACTTAAAGTAAGAACAGGAAGG 5699 29 100.0 38 ............................. TTCATCTTTGCAGTTTGAGTTTTAATCTTATCTTGTTC 5632 29 100.0 36 ............................. TATTACATGAGATGGTACATTTATATCATAATGTTA 5567 29 100.0 36 ............................. TCAAAATCAACTGTCCAAGATTTTAAACCCATTATG 5502 29 100.0 36 ............................. TGAAGCTATAAGGATAAAAGATGTAAGAAGAACTGA 5437 29 100.0 36 ............................. TTACTATTTTTAATAACTCCATTTAAAGTTATATCT 5372 29 96.6 35 .............C............... TAGTTAATCTATGTGCTTCTTTCATTATTAAACTC 5308 29 100.0 37 ............................. TTGCTTTTTAAGACACACTCTAAATATGTGCCTTCAT 5242 29 86.2 0 .................GAA....C.... | T [5215] ========== ====== ====== ====== ============================= ======================================= ================== 60 29 99.7 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAATAGAGAATGAGTCTATTACTAGCTTTTAGCATTTTGAAATTTGGG # Right flank : ATATATAAAGCATCTTCAAACTTAAAATCATACTTTTAAACTTATAATTTTTTGTTTCAATAGCAAGTGAACCTAATGAAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATATTTCCAACATATATGGTAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATAAGTAATTTTAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGATATCTGTCCATTTTTACTTAATTATTGATATATACTTATTAAATTTAGAACTTTGAATCTAATAATCTATATATTTAGCAGTTTACATCTAATATCTCCCTTGAAATTTCCTCGAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCATTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //