Array 1 9284-8763 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTYY01000006.1 Ruminococcus sp. TF08-4 TF08-4.Scaf6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================== ================== 9283 29 100.0 39 ............................. GATTTGTGAACTATTTAATTACTTTTTTCTCTTTGGAAG 9215 29 100.0 36 ............................. GCAACAACTTTAATTCCATATTCCTTAGATAATTCA 9150 29 96.6 38 ............................A GTTCTTGAAATGGTCATGGTTTTCTTGTGTCATAACAG 9083 29 100.0 38 ............................. AATCGCAGTTGTCATTTTTTCATAGTGCTATTAATTAT 9016 29 96.6 62 A............................ AATTGTGAATTAGAAATGATATATTGAGAACTGATAGAACTGAATGTCTATCGGTTGTCCTC 8925 29 100.0 37 ............................. GTGAGCATAACACGGTTATAGATTGTATGAGCAATAC 8859 29 100.0 38 ............................. GCTAAACTTGTTTTAATTGCTGCCAAAACTTTGTTGAG 8792 29 93.1 0 ......T.....................T | T [8767] ========== ====== ====== ====== ============================= ============================================================== ================== 8 29 98.3 41 GTAATACCGTACCTATAAGGAATTGAAAC # Left flank : TTGAAGAAAAGGAATCAGGTGCTATTTATTTAAACAAAGAAGGTAAACGAATCTTCATTAAGGCTTTTGAAGAAAAGCTTGCAGATAAAATAAAATTGGGAGAGAAAACGTATACATATAAACAAATAATTGAGGAAGAGATAAGAAAATTTCAAAGATATATTGTGAAAGAAGAGAAATATAAACCGTATAAATATTGGTGATGTTAAATGGATTTATATAGCTATCAAGAAGAATATGCTCAAAAAGTCTGTCTACCCTGAAAGCCTTGAAAATACTGGGAAAAACGACAATCGAAGCAGCTGAAAACAAAGGAAAAAGCTATAAAAATCTAAAAAAAATGCAAAAAAGTCTGTCTACCGAGACGAAAAAATATTTTTTTGAAAAAAGCTTGATTTTTCAAGGGAATTTGCGATAATAAAAAAGTGAGGTCGACAGACTTTTTGAAGAGTTTTGAGACGAAAAAAGAAGACAGCGCCGGAAAATGGCGAAAGTACTGT # Right flank : ACTTCTGATTCACATCTTTCAATCAAACATCCACAAAAATGTAATATGATATCATTTGAAGATACTGAAAATCAATTGGTGATATATGTTCGAGAATTTGATGCGAAGAATCAAATTCTTATCACGAAGTATATAAAAGAACTTGTTGATAAGCAGAAGAACGGTGATATTCAAGATGTGTGTGTTTCTGTACTACTGGTATCTACGTAGAATCTGAGGTAAAGATAAGGGGAAAAGGACATTTTTATGAATAAAAAAATTAAATATGGAATTATCTGCGTTGTTGGAATCGTAATTTTGATTTCTATGTGTTTCGGCTGCAAAAAGTATGATGAAAAAAGGCAAATAGAAAGTATGAAAAAGGAAGAACAGCAAGCGGTTGAAGCAGCGAATATTGCTGAACAATATGTGAAAAAGTATGCCAATAGCTTACAAAACAGTATGGCAATTGCTCCGCTTACAGATTTAAAAGTCGAATATCAGGAAGTGACATGGGGTGA # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:-0.22, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATACCGTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 2 12350-11851 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTYY01000006.1 Ruminococcus sp. TF08-4 TF08-4.Scaf6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 12349 29 100.0 39 ............................. GGAAGAATACTCCCAACCATCCTACAATACCATAATTTG 12281 29 100.0 37 ............................. TTCTTTGTAACCTTTAATTTTCCTCAGTTACTTCTTT 12215 29 100.0 35 ............................. ACGACATTTTCCGTTTCGTCATCTCCTTTTACTGC 12151 29 100.0 39 ............................. TCCTGTTACCATTGTTGTGTTACCATTTTCCATCATAAT 12083 29 100.0 36 ............................. ATAATATTTATACATCCTATCCACTCTCCTCTCATT 12018 29 100.0 41 ............................. ACATAATTATACCCTCTTTCCGTTTGCCTTTTAGAAATTTT 11948 29 100.0 40 ............................. ACTGTGTCATTTTCAATCTCCGTTACTGTTGTTGACAGCG 11879 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ========================================= ================== 8 29 99.6 38 GTAATACCGTACCTATAAGGAATTGAAAC # Left flank : CAACAGAATGCATATAATAAATATACTGCATATTATGGAGTAGAACCGGATTCGTATATTGAAATTCAAAAGATTCAAAATAGTGTTGCTAAGAAAATGGTGACTAAGTATCAAGGACATTACATCATTGCGTGGTATGGAGAGTATATTTTGTCAGGAAAAAGAAAATATCTCGATTTCTTATATCAAGTAGGAATAGGTGCAAAAAACTCCCAGGGGTTTGGAATGATAGAAATGCTGTAAAAAAGTCTGTCTACCTCGAAAGCCTTGAAAATACTGGGGAAAATGGCGATTGAAGTGGCTGAAAACAAAGGGAAAAGCTATAAAAATCTCAAAAAAATGAAAAAAAGTCTGTCTACCGAGACGAAAAAATAAACTTTTGAAAAAAGCTTGATTTTTCAAGGATATTTGCGATAATGAAAAGTGAGGTCGACAGACTTTTTAATGTGATTAGAGGGAGAAAAAAGAATACAGAGTCGGAAAACGGCGAAAATACTGTT # Right flank : GTGAATCCTCTTTCCACTACTTTAAATGACGCTAAATGTAATACCGTACCTAATAAAGAAGAATACAAAAGGGAGCTAAAATGTTTGTAATTGTTGTTTACGATATAAATCGTAAAAGAGTAGGAAGGGCTCTTAAAATATGTAGAAAATATCTTGTCCATGTGCAGAAATCGGTATTTGAAGGAAACATTACAGAGGGTCAATTAAAACAGTTGAAAAACGAACTGTTCCAACTGATTAAAATTGAAGAAGATGCAGTTTGTATTTATAGATTTGAATCACCGAAATATGCAAGAAAGGAAGAACTTGGTACAATAGAACGGAAATCTCATATAATATGAGCAGTGTAAAAGTGAGGAGGCAATCAGATGTTTTCAATGGAAGAAATGCTTTCTAAGAAGAATCAGAGAGAAGCTTTTTCATTTCTTAAGAATAAGAAAGATGGAATAGGAGCAGATGGGATGCCCCTGTCAGAACTTGAAGATTACTGGAAAATTAAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATACCGTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 3 43207-42566 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTYY01000006.1 Ruminococcus sp. TF08-4 TF08-4.Scaf6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 43206 29 100.0 38 ............................. GCACCGACAGGGTTCGATTCAACAATCCAATCCAATAT 43139 29 100.0 39 ............................. TAAATGCATCTTCAGACACTGGTTGTCCATACCATTTAA 43071 29 100.0 39 ............................. CAAACAGAATTTATAATATCTGCTTTATTTGTTCCAACA 43003 29 100.0 41 ............................. GATTTGAAAAGGATATCTTCTAATTCCCCTTCATACTCAGC 42933 29 100.0 38 ............................. TTGTAAGTTTTTTCAAAGTTGGGTCATTAGCTGCAGAT 42866 29 100.0 38 ............................. AATAAATGGTTTCTTTTTTCTTTCCATTTTCTCAATAG 42799 29 100.0 41 ............................. AATGCTTCCTGTCCCTACAGAATTTTTCGATTTTACTTTGA 42729 29 100.0 40 ............................. CCTTTTCCATAATTCAAAGGCTCCTTTCTATTTTGCAGAA 42660 29 100.0 37 ............................. GGAACCTCACTACCAAATGCACTTTTTGTACGTGAAA 42594 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================= ================== 10 29 100.0 39 GTAATACCGTACCTATAAGGAATTGAAAC # Left flank : ACAAGAACAGCTGTCAATATCACAGGTGATGCTGTATGTACAACAATCGTTGCACATCAGAATAAAGCTCTGGATAAGAAAGTCTTTTATGAGACAGAGTAAGAGTGAATAGATAGTATATGTACTGTCTATGGTATAGAATGATATAAGAGAAACCCCTGGTTTACGTCTGGAATGATGTGAAACAGGGGTTTTATGACAATAGCGAATGTAACACATAATCATCCGGAAGAAATTTGCTCGAAAAAGTCTGTCTACCTCAAAAGCCTTGAAAATACTGTGGAAAATGGCATTTCGACCTTAAAAAAAGATAACAAAAGCCATAAAATACATGAAAAATCGAAAAAAAGTCTGTCTACCTAGCAGAAAAAATAAACTTTTGAAAAAAGCTTGATTTTTCAAGGAAATTTGCGATAATAAAAAGTGAGGTTGACAGACTTTTTAATGAGATTAGAGGAGAAAAAAAGAAGACAGTGCTAGAAAACGGCGAAAATACTGTT # Right flank : CTTTTATTTGCAACAGCAAGTAATCCAAATGAAAAAAGAAAAGATTTGTAATTAGCTTGCGACCAATTCAATTTTTAGAAGGACTTCTAGAAGTTTAAAAAAGGTATTAGAGAAAGAAAATAGAAAAATAATCATTCATGTGTTTGTCGTGCGAACGCCAATATATGTATTTTTTTTAGTAACTACATGCTACAATATATGACAAGAAGCGATCTTTTTCTTTGGATGACGAGTGTAATGGAAAATACGAGGAGGAAATATATGGATGTCAGTTAAAACAAATTATTTAAGTCTCTTGAATTGACGGGAGTAGATAAGGAAACACTATCTGAATATCTTGTGACTTATGAATATCTTACAGAAAAGATAGAACGTCTTGATAACAGGATTGGAGAACTTGCTTCCGATGAGAAGTATAAAGAAAAGTTTCAAAATATGGGATGCTTTCTAGGTATTAAAGTGCATACAGTGTTGTCATTGATTGTAGAGATTATAGATGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATACCGTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA //