Array 1 317334-319375 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZDY010000007.1 Salmonella enterica isolate 8488_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 317334 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 317395 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 317456 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 317517 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 317578 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 317639 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 317700 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 317761 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 317822 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 317883 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 317944 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 318005 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 318066 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 318127 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 318188 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 318249 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 318310 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 318371 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 318432 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 318493 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 318554 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 318615 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 318676 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 318737 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 318798 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 318860 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 318921 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 318982 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 319043 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 319104 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 319165 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 319226 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 319287 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 319348 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 335508-336495 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZDY010000007.1 Salmonella enterica isolate 8488_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 335508 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 335569 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 335630 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 335691 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 335752 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 335813 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 335874 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 335935 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 335997 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 336100 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 336161 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 336222 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 336283 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 336344 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 336405 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 336466 29 96.6 0 A............................ | A [336492] ========== ====== ====== ====== ============================= ========================================================================== ================== 16 29 99.6 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //