Array 1 100953-100272 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNYP01000002.1 Streptomyces vinaceus strain NRRL ISP-5257 contig2.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 100952 30 100.0 31 .............................. ACCTGCCCCGGATGCCCGCCGACACCCGGGG 100891 30 96.7 31 .............................A CGGTCAAGTGGGCGCTGGGGCAGCTCAAGCG 100830 30 96.7 31 .............................A TCAGCGACGTCCGCACCTTCACCGTCGCCGC 100769 30 96.7 31 .............................G GGAAGACCACGCTGTCGGGCGGCATCGCGGT 100708 30 100.0 31 .............................. TGTCCCGGCGGATCAGCCCGTTCATGGTGCT 100647 30 96.7 31 .............................G GTGGCTGCCTTCCACTCCAGTTCGACGTACC 100586 30 100.0 31 .............................. CGATGTCGGCGGCGAGGGCTGTGCCCGAGTC 100525 30 100.0 31 .............................. TCGGCAGCGCCTTCACCGCCGACGCCACCAA 100464 30 93.3 12 .........................C...C TCGCACGCGGGG Deletion [100423] 100422 30 93.3 31 .........T...................C TCGCCGTTCACACCCCGGCCGCCTTCGTGAA 100361 30 96.7 31 .............................A GGCCGCCCTCCTCGAACTGGCCGAGCCCTGC 100300 29 93.3 0 .........................-...A | ========== ====== ====== ====== ============================== =============================== ================== 12 30 96.9 29 GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Left flank : CACCGACAAAATCCCACCCCACATCCCCGGAACGGCAGAAGCCCGATCACCGGACGCCAAGCAGCCGACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGCCCGCCGGAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCACCACGCGCACACTCACGGCGGCGAGTCCACCGCCCCCACCCCGGACGAAGTCGCCGCCGTCAAAGCCCACATCGCCAACCTCCGCCACCTCCTCAAACCCGTCTGACCCTCGCCAGAAGACGGCCCTTGGGGCAGGGCAGGCACACCACACCCCGGGAACAACCCCACGGAAGGCAGAGCCACACACCTTCCACCGAAGCGGGGACGATGAGAGCAGTAGTGGGCAGAATGACATCAGCCGAACCACACACATGACCACTATGCCAGGGAAGGCCAGATATGTTGGTTTCTCAACAACATAGTAAAAACCGCCTCCCCGCCACCTAAACCCCCAGGTCACAAAG # Right flank : CGCACCATCGCTTGCGTGAGATCACGGCCTCGAAGCCTGGAAGGGCGGAACCTACGGCCCCTACTCCGGCAGGTTCCGTGACCATCCGAGCTCCTGCCCGCCGGCCCCGATCCGGCGCTCCGGAAGGCCGTAGATCCCGAAAGGCGGGAACAGGTCGACGCGGCGCGGATAGTCGCCCTCCGCGCAGTCCCGACACAACAGATCCCGGCCCCGATCGGTGTGCCGCACGGCAGTCACCGGAGCGCGCCAACACGCTTCGCACGTGCGGACATCCGTGGTCGGCAGATCAGGGCTCATCCGGAACCCTCAAGCGCAGTGGCCCCCTCATGACACGGACAGGCGCACGCTGGCAGACGGCACAGGGCGTGCACACCGGCCAGGTCTGTCACCAACGCGCTGCGGCACACCACGCTGCACGGACCGTCCGCACCGGCCGACAACGCGTCCAGCGCTACAACCGGCTCCCCGGCCTCGTCGGCCCCGGTGATCGGATCACCTCG # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.15, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 105474-105080 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNYP01000002.1 Streptomyces vinaceus strain NRRL ISP-5257 contig2.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 105473 29 93.1 33 ..............T..A........... CCGGCCTTGCTCTTGGGCGCTGCCTTGCGGTGG 105411 29 96.6 32 ..............T.............. CAGCCAGGGAACGCGTACCTCAGCGCGAGCGG 105350 29 100.0 32 ............................. GGCACCCAGGCCGTCATCGACGTCGCCATGCG 105289 29 96.6 32 ..............T.............. GTGCGGGCCATGCTCGTGGGGCGGATTCCGGT 105228 29 100.0 32 ............................. GCCACCCATTTCCTTGCCGCCGGGATGAACGG 105167 29 100.0 32 ............................. CCGTACAGGATCGGCTCGCGCCGATAGGGGTA 105106 27 82.8 0 ..............--.....T.A.C... | ========== ====== ====== ====== ============================= ================================= ================== 7 29 95.6 32 GTGCTCCCCGCGCGGGCGGGGGTGGTCCC # Left flank : GCGCGGGCATGCGTGATGGCTCCTGTGACGGACACGGGGACGGCCGACGACCGGGGAGGGAAGAGCCCTGCGCGAGCGAGCGCTGGGCGGTGGCCGCGCGATGACCGCGGGTCCCCCGGCTGCCGGGTGGCCGAAGTTGACGCGTCGAAGTCTCGCCGCGCACCACCCACGGGGTCGTCCCCCCAGCAGCCGAACCACGCCCTGCCCGAAAGTGCCACACCCGGCCGACCGACACCCCTCGGAAGTGCTACCGCCGGGCATCCTTCTTCTGACCGATCCTGGCGACCCGGGGGCGACGGGCTGCCGCCAACAGTCCGGAGTACGACCGAAGTACGGGACAGGGCGCTGGGTGAACTGGCAGGCTGAGAGACGGATCCCGGGGGGGGTGCTGACCTCCGCCCACCTGGCAACCCATTCAAAACTTAAGGCCACATATGCCCGACTCTCAAGAAGTTCCCCAAAACGACCTCTCGACCGGATAAACCCGCAGGCCACGAAGG # Right flank : TCCACACCCCCACCCGGCTCCACCCAGCCGGGTGCCCCTCCCCCCATCGCGATACGTACACCCACGCCCCCGTCCACCCGACAACACCGCAGGTCGCGTGCCCTATGGTCTCCGTTCATGAGCCGAACCACGCCGCCCCGCCCGGTGAACATCGAGGCGCTCTTCCCGAAGCTGGGCGCGTTCCGCGGTATGACGACGCGGCTGCACCCGCGGCCCGGCCGTCCGGACGCGGCGGCCAGTTCGGTCGGCGGCCCCATGCTGTGGCCGGCCGACGAACCGTGGCCGGTCTGCACCGAACCGCACAAGCGCAGCAGCGGGTACCGCATCGCAGACGTACGACGCGAGCGCCAGGTACTCGCGGACGCCTGGGCGCGGGACCGCCCCACCGATGAGGAGCGGGATCTGCTCAAGGAGCTGGGCCACAGGCACCGGCAACGCGAGATCGCCGACACCGGTCCGATCCCGCTGGTCGGCCTGGCCCAGTTGTACCGGCGGGACGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGGGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGGTGGTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.70,-14.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 20250-20462 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNYP01000031.1 Streptomyces vinaceus strain NRRL ISP-5257 contig31.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 20250 30 83.3 31 .CA.......T.............A....A GGTCCCGGATGTGCCACTTCCGGCGCTGGGC 20311 30 90.0 31 ..A.....................A.T... GCGCCACGAGCTGGAGAACTACGCTCTCATC 20372 30 96.7 31 .............................G GGGAATGGGTCCTGCCACCGCTCGTCACGAT 20433 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================== ================== 4 30 92.5 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Left flank : CGGGACCTGGCCTTCCTGCATGACCGCACGCGCGTCAATGAGGGCCGCAAGCAGACCTACGGCACACAGATCGCCGGCGTGAAGGACGGGGCGCCAGTTCCGTGGCCCTGCGACGAGCCGGAACGCATGGACGAACTCCGCGCCGAAGTCGGTATCGAACCCTTCGACAAGTACGTTGCCAAGTTCTCAGTTGCCTGACGCCGACCGCGTCCGGCGGGTCATACCCTGAGGCTCACCAGCCATGGGCAAGAGCCCTCGGACGGCATCTCCACCCAGCTCCTCGCGCCGCGGAACAAACGCGCCACACCCCGGGGCCACCGCCTACGGAAGGCGGAGCCTCACCGCTTTTCGAAGCCGGTCCGGCGAGGCCGGTGACGGGCAGAATGGCATCACCCGAACCACATCCGTGACCGCTTCATTCCGCAGAGCGATGTATGCCGCTTTCTGACCAAGTGAGTAAAAACCGCCTTCCCGTCACCTAAACCACCAGGTCACGAACG # Right flank : TGCTCCAGGTCCGGGCCGGGGAACAGGAGGTCGTGGTCCCCGCACGCGGATTCCCCGCCACAGCGGACGGCCACAGGCAGGGCAGGCCCCGCCGTACGCGGTGGAGGCTGTGCCTCGCCGCCGCCTACGAACGGGACCGGCGGTCGCCCGTACGTCACCGCGCCCAGCGGACTACGTCGCAGGTACCGGTTGGCCACCGTCTTCCGCCTGATACGCCCCCGGGGCCCGCTGGCTAGCGTCGTCCTCATGCGTATCGGACTGCTCGGCACCGGAAATGTCGCCCGCGCCCTGGCCCACGGCTGGCGCGCCGCAGGGCACGACGTCCTCCTCGGATCGCGCCACCCGCAGGAGCGGGGTGACCTCGGTCTGCCCGTCGCGGGGCTCGGCGAGACCGCCGCTCGCGCGGACGTCCTGGTCAACGCCACCCCCGGTGGCGTCTCCCTGGACCTGCTCCGCTCCATCGGAGCGCCGGTCCTGGCCGGCACCCTGCTGATCGACGT # Questionable array : NO Score: 3.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 624325-624173 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNYP01000005.1 Streptomyces vinaceus strain NRRL ISP-5257 contig5.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 624324 30 90.0 31 .A..........................CT CGCCGGCCAGCTCCTTCAGCCCCCGGCTGAT 624263 30 100.0 31 .............................. AGTGGGGAGAGATGGTCACCTTCGGGGTGGC 624202 30 93.3 0 ...........................G.T | ========== ====== ====== ====== ============================== =============================== ================== 3 30 94.4 32 GTGGTCCCCGCGCACGCGGGGGTGGTCCGG # Left flank : CACCCCACATCCCCACGACGACAGAAGACCGATCACCGAGCACCGCCAAACCCACCCACGAAACCCTCCTCGAATGCACCAACTGCCGCCGCCCAGGACCGCCGCAAGCCCTACCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACCCACGACAGCGACCCCACCACCCCCACCCCAGAAGAAATCGCCACCGTCAAAGCCCACATCACCAACCTCCGCAACCTCCTCAAACCCGCCTAACCTCCGGCCAACAGACCGTGGCTGGACGGGTCAGGACAGGGCTGCACACGGCACCAAACCCACTTGCCCAACGCCTACGAAAGCCAAAGCTTCATCTCTTCTACCGAAGCCGGGCCGACGAGGTCGACAGCGGGCAGAATGACATCAGTTAAGCCACACGCATGAACCCTTTGCGACAGAAGGCTGGATATGCCGGCTTCTCAAGAAGTGAGTAAAAACCGCCACCCCGCCCCCTAACCCCCCAGGCCACGAAGA # Right flank : CGGGCCACCCGCCGCACCTGCCTCCGGCCGGGGAGCATCCAGGCGCGGCCGGCCCGAGGCCGCCACCCTCGCCCCCGGAGCACCGCCCCTACGCTTCCGACGCCCCCGACACCGCCACCCGGAACCCGACACCGATCGCCGCCAGGTCCTCCTCGTACGCGCCGTGGCGGCGGGCGCAGCGGGCCAGGTCGCGGTCGTGGCGGAAGGCGCCGCCGCGGGTGATGTGGCGGTCGAACGCCCAGTCCTCGGTCTCCGGGACCCCGGCGGGCGCGCCCGGGTACGGAGCGTAGAGCGTGGACGTCCACTCGTCGGCGTTGCCCGCCATGTCCAGGACGCCGAACGGGCTCGCGCCCTCCGGGAAGGAGCCGACCGGCGTCGTCGTGCCGACGCCCAGGTCCACCAGGTTGGCCAGGCCCGTGCGGTACTCCTCGCCCCACGGGAACTCCCTGCCGTCGTCGCCGCGCGCGGCACGTTCCCACTCGTCCTCGGTGGGCAGGCGT # Questionable array : NO Score: 3.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 83486-82969 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNYP01000027.1 Streptomyces vinaceus strain NRRL ISP-5257 contig27.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 83485 29 100.0 32 ............................. ACGACCTTGCCACTGCCCGACGTGGGCAGGCC 83424 29 100.0 32 ............................. CCGCTCGACTGGCAGGACATCGAGCTGGACCA 83363 29 100.0 32 ............................. CGCGCGGACATCCACGCCTGCACCATCGCTCG 83302 29 96.6 32 .................G........... GCGTCGAGGGCGTCGCTGGTGAGGTCGTCGAG 83241 29 93.1 32 ..............T..G........... ATGCGGCTCAGGGTGGACGTCGAGCGAGTCGT 83180 29 96.6 32 .................G........... GAGCCGCTTAAGTACGAGGGCCAGACCGAAGA 83119 29 89.7 32 ...T.......C.....G........... TCCGCCTGGAGGAGCCAGAGTCGTTGTTCGGT 83058 29 86.2 32 .................G...G..C...G ATCGCACCGGAGAGGTCGACCTCATCCTCCGC 82997 29 69.0 0 G.C........CGG...G...G..T...G | ========== ====== ====== ====== ============================= ================================ ================== 9 29 92.4 32 CTGCTCCCCGCGCCCGCAGGGATGGTCCC # Left flank : GAGCGACAGAGGCCTGCATGTGGCGTCCGGAGTGAACTACGGAACGGACGAGCACGAAGCAGCAATCTGGTGACCGTGATCGTCCTCACCAATTGCCCTCCAGGCCTGCGGGGCTTCCTCACCAGATGGCTCCTGGAGATCTCCGCCGGCGTGTTCATCGGTAATCCTTCATCCCGCATCCGAGACGTGCTGTGGGACGAAGTCCAGCGATACGCCGGACAAGGCCGTGCGCTTCTCGCCCACACGACCAACAATGAGCAGGGGTTTACGTTCCGTACCCACGACCACGCCTGGCACCCCACCGACCACGAAGGCCTCACGTTGATCCAGCGCCCCATCGACAGCAAGGGCGCAACGAGTAGTACGAAGAAGCCAGGGTGGAGCGCAGCATCCAAGCGCCGCCGATTCGGAAAGAGATAGGCGAAATCTCCGCTATCTCGGAATTGGTGAAAGTGTTCGAGGAACTGATGAGCCCACGGTAAAGCTGCAGGTCATCAAGT # Right flank : ACGTACGCACCGCCCTCAAGGGCGACCTCCGGGTTCTCCCCGCCGAGGCTGTCGTACAGGGCTGGCGCAGAGGTCGGGCCGGGCAGCCGGAGGGGGCGTGCGTTAGCTCGTCGAGGGGTTGACGGTGAGGGTGGCCGTGTTGTTCGTCAGGTCGGGGTCGTAGGTGCGGACAGGGGGTTCGTAGGCGTCTTGTAAAGGGCGGCGCGGCCGGTGGCGTTCGGGATGGCCTCGTTGATATGGAGGGTGAAGGGGAAGGTGTGGGCGGCGGGCTTGCCGGATTCGGTGAGGTAGATGGGGGTGTTGCAGCGGTAGCGGGTCTCGGACTGGGACCAGCAGCTGTCGGGGGCGGAGGCGACCGAGGGGCCGGCGGGGATGTCGATGTCGACGGTCGCGGCGGGTTCGCCCGCTCACCGAGAGCAAGCGGATGCCTTTCCGGCCTCCGAGGTCGGGCGGGCCTGGGGCACTTCGGTCGCGGCACCCCACTGAGACCGGCCTTCGGT # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCAGGGATGGTCCC # Alternate repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCAGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 93116-95767 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNYP01000027.1 Streptomyces vinaceus strain NRRL ISP-5257 contig27.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 93116 29 100.0 32 ............................. GCCTTCGCCTGCGGCTTCCGGCTGCGGAGGAT 93177 29 100.0 32 ............................. AGCGACGGGGTGTGGTGCAGCTCGGCCAGCCA 93238 29 100.0 32 ............................. TACCTGGACCTCAAGTCCCTGGACGACAGCCT 93299 29 100.0 32 ............................. GGAGCCGCCTGCAAGGGCTCGTGGACGCGAAT 93360 29 100.0 32 ............................. CCGGATCGCGGTCCCGCCGAACAGGCCCCGGG 93421 29 100.0 32 ............................. CTGACCAGTCGGGCCTGAACGACTGGTACAAG 93482 29 100.0 32 ............................. CTCGACATCCACCTCATCAACCGGCTCGGGCT 93543 29 96.6 32 ............................T TTCAGCCGTTCGGGTGCCGCTCATTGAAATTC 93604 29 100.0 32 ............................. ATGGTCCGCGACGCCAACCGGTCACTGAACAA 93665 29 100.0 32 ............................. ACGCGGGTGCGGGACTGGGTGCACGCCACCCG 93726 29 100.0 32 ............................. TCAACGACGTCGGCGTCGGTGTGGGCGAGGCC 93787 29 100.0 32 ............................. TGGGAGCGGGGGGCGTCCGAGCCGACCCCGCC 93848 29 100.0 32 ............................. TTGCTGAGCAGCAGCGGGGGGCGGCCGTTGTC 93909 29 100.0 32 ............................. TTCCGCCACGAGCCGGGCCCCGTGCCCACTCG 93970 29 100.0 32 ............................. CGAGGGCTGCTTCGACCTTCTTCACTGAGGGG 94031 29 100.0 32 ............................. GACGTCATGGTCCAGGCGTGCGGGAGGGGTTG 94092 29 96.6 32 ............................T ACCAGCAGGCCCGCGAAACCCTGATCTACCGG 94153 29 100.0 32 ............................. ACCATGACCGCTGAGCACGACCACTGGAAGGC 94214 29 100.0 32 ............................. GCGCTGGCGTGGCTGTTCCCCGACGACACCGA 94275 29 100.0 32 ............................. CTCGTCTACAACCCGTCCGCCGAGGTCGACCT 94336 29 96.6 32 ............................G TCCCCCACCCCGAAGAAGTCCACCAAGCGGGC 94397 29 100.0 32 ............................. GCCTCAGCGGCCCCGTCGGGGTTGTAGCGCAG 94458 29 100.0 32 ............................. TGAAGCGCCTCGTGCGGGTGCCGCTCCTGGTG 94519 29 100.0 32 ............................. GTGATGCCCGTGCCCTGAGACCGGCCGAGCTT 94580 29 100.0 32 ............................. GGCCTCGCCGGGGTGGTACGTCAGATCGACTC 94641 29 100.0 32 ............................. CCGACCCACTGATCGAGCAGGCCCGCGCCGAG 94702 29 100.0 32 ............................. GTGGCGCTGCACAGCAGCAGCACCCACAGGCT 94763 29 100.0 32 ............................. TGCCGCTCGGGGCGGCGTCGGAGTTTCCCGTC 94824 29 100.0 32 ............................. GGCCGCCCTTCCCGGCCGAGTCCTTCTCCTGG 94885 29 100.0 32 ............................. GCCGGCGGCACGGACTCCGAGGCCACGACCAA 94946 29 96.6 32 .................A........... TCCTGCGAAGAGGTGGAAGCCGGGCCCGAGGG 95007 29 100.0 32 ............................. GACCGGTACCACGAGGCGCGGGCAGAGCTAGG 95068 29 100.0 32 ............................. AAGGCGCAGCGCGACAGCCTGTACGCCGGGGC 95129 29 100.0 32 ............................. GTCACGGTCAGCTACCCGCACGCGAGGCTGTC 95190 29 96.6 32 .................T........... ACCACGTTCACCGACACCCGGATCAGCCAGGT 95251 29 100.0 32 ............................. CGCGCACAGGACGTCAAGGACATCGACGGCTA 95312 29 96.6 32 ........T.................... CCGGACGAAGCCCTCCGCCGCGTCCTCACCAG 95373 29 100.0 32 ............................. GGCCATGCGGATGGTCGCTGTGTCCTTCGGGA 95434 29 100.0 32 ............................. GTCCCCGTCGCCTCCCTGGAGCCGACGACCGA 95495 29 96.6 32 ......................A...... ACCCCTGTACGAAGGAGGAGCGCGATGCTCCA 95556 29 100.0 32 ............................. AACGGCGAGCTCACCCCCAAGCAGGAAGAGGC 95617 29 96.6 32 ...........G................. GTTCCGCCGGTGCTGGTGGTCTGGACGCAGGC 95678 29 89.7 32 ..................A..G.....T. GAGTGGCGCGTGACCACCGGCAACCCGGTCGT 95739 29 86.2 0 ........T.......A......T....A | ========== ====== ====== ====== ============================= ================================ ================== 44 29 98.8 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : TTGCCTTCCCGATGTCATGCACCCCAGCCAGCCACACCAACAGCCGCCGGGCATCCTCCACCCCGCCGGGCAACGGCCCCGCGATCACATTCCGAACCTGCTCAGGCAGCCACTCGTCCCACAACAGCCCCGCCACAGCGGCACTGTCCTCCATGTGCCGCCACAACGGCAGCCAACCCTCCGTATCCCGATCATGCTTCGCCCACACCCGCCGAACAGCACCCTGCAGCCGCCCCCCAAGGCCCGAACAGGCCCCACCCTCATCAGCCATGTCAGATGAATACAGGCAAACAACCGAACAACACGCCCTGATCAAAAAATCTGATGGTTCTTCGATCGACAACGTCACGTCAACCGACAACTCGCCGTAAGATGCGCCGACGTAATCCGCGACCTAGCACAACGGGCAGCAGGAAGATGGCGAAATAATCCATATGCCGGAATCAGTGAAAGTGTGTGAGATCTCGGTCCTCCCGCTGTAACGCTGCAGGTCAGGAAGT # Right flank : ACGGCGGGGTCCGGAGCCGCAGCGCGCGGCCGCCTGCTGGCTTACGTGTCTCAAGTAGTAGCAATTCTCGCTGATTGCGCACTGGAGATTGGCAAAGGCGAGCATAATGCGCCTAATAGTGAGCAAGGTTGGCTATTGCAACACGGAAGGCATAGAGAATCAGTTACATCTCTCACTACTCAATGGTCCCTGCAGAGCCAGGGATGACCCCACGGAGGGCATCGCAAGTACGTGCTCCCTGCGCACGCAGGGATCTTCCGAAGCTCAGCCGTTCCTCGACAGCTCGACATCATCAGCAAGCATGCGTGGACACGGCACAGGCAGGCATGATGCTGAGTAGCTCAGTCACTGAGATGGACGGAAGCAGGACTTCATGACGAGTGCACCGGACTACAGCCAAGGCGTTGATGCCGAACGCGCGTTGAAGTTCGCTGTTCAGCGCATCCGTGGAGACCGAGTCCAAATCATCGAGGGGATCATCGAGCCTGTGTCACCGACCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 97939-98977 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNYP01000027.1 Streptomyces vinaceus strain NRRL ISP-5257 contig27.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================================================================= ================== 97939 29 69.0 201 .........A.G.A..T.AAAT...T... ATCGGCATGGGCGCGGTCGCGCTTGCCCCCTCCGTGATCGCCGGCCAATGGGCGCGATTACCTGGCGAGACCAGAACTGTCCACCGGGTGCTGGGATAGCCTTGTCGTCACGGCAGGAGAAAGCCAATGGTCGATATGTCGGATTCGGTGAAAGTGCTCGAGAATCACACTTTCCGACTGTAACGCTGCAGGTCAGGAAGC 98169 29 100.0 32 ............................. CCGAACCGGACACGAAGGCCGCCGGGCCCGCT 98230 29 100.0 32 ............................. GAGGTGAAGGGCCGGGCCACCCAGCTCAAGGT 98291 29 100.0 32 ............................. GTCGGCGCGATCCTCGCCGAGAACAGCCAGGT 98352 29 100.0 32 ............................. CTGCTGCACACCCCGCACGCCCCGGGAGAGTC 98413 29 100.0 32 ............................. GAGCGGAGCAGTCGACCGGACACGCAAGCGGC 98474 29 96.6 32 ........T.................... ATTAAGGCCCAACTTGCTCCGACAACGGAGGG 98535 29 100.0 32 ............................. CGGTCGGCAGGCGAGGGGGGTGCGTCCAGGAC 98596 29 96.6 32 ............T................ CCTCCAGGCGCTCGCCCTGGAGTACGGCGTGA 98657 29 100.0 32 ............................. GTGAATATGGTCGAATCCGGGCCGGTGGCGGC 98718 29 96.6 32 .........................T... GCCGGACGCGCCGACCGCGAGGCCGAGGCCCG 98779 29 96.6 32 .........................T... GCGCGTTAAGGAGAAAGAAAAATAGGGGTCCA 98840 29 93.1 80 .........................TT.. ACAGCGCGCGGCGTGCCGGTGCGGGCGAGCCCCTGCTCTCTCTTCCCCCCCGCCGGGCACGGGAGCAGGGGCCAGAAGGC 98949 29 69.0 0 .C.........G.A..T...CC....GGG | ========== ====== ====== ====== ============================= ========================================================================================================================================================================================================= ================== 14 29 94.1 49 CTGCTCCCCGCACCCGCGGGGATGGCCCC # Left flank : AGCCGACTCCGCGGCCAGTGGGAGGCCCGCCTTCGCCTGGTCGGAAAGCCGCGAAGCGGCCGTCCTCTTCACGGGTTCCCGTGGTACGGCCGAGGACGGCGTGGTCCTCCGACACATCTCGGGCAAACGTTCCAGCCCCGACCCCAGCCCCAGTGCCGGTGCCGGTGCCCGTTACGGAAGTGCGTCCGGTTCTTAAGGACGTTCGGGCGTCGGGGTATCTTGGGGCGGGACGGCTCGCAGAGCTCGCGACGGACCTGCGGCCGCTGCTGGAGCAGACCGCTCGGGCCGGAACGACCACTACTTGGAAGGCGATCCGCCAGCGTCTGCCCGCCCTGGCGCGTCTGCACCGCGACGACGAGAGCGTCCTGCTGTGGCCCCCGCCATCGCTGAGCAGCTCGGCGTTACAGCCGGACGCTATCCGACGCAGCAGCGCTCCACCTGGAACTACGAAGTCCTGAAGTCTCATCAGCGCTGGCGCCACCGGAACTGATGCTGAAAGT # Right flank : GCCAGGTCGACACCGGATACCTGGCCGCCGCTCACGACTGCCCCCAGGTGGAGTAGCTGAGGTTTAGGTGCCCGAGCCCGTATAGGTGCTGCGCCTGGTCGACCAGTTGGTTGCTGAACAGTCGCCTCGCTGATGGCTCGCTGTAGCGGTCGATGTGGTCAAAGACGACGCTGTGGTCCTTCATCGCCCGCACCCGCCAGTTGCGCACCTGGTCGGGGGTCAGGTCCTCGAGGACGAGCTCCTGGTCGTCGTCGACGTCGGCCGTCTCTGGACACAAGGCCGGAACGACGGCGGCAGCGCGCGGGGCGGGCAGCATGACCGGTGCCGCCGGCGCGGCTGGGACCTCACCGGCCGGCTGCTCGGCGGCGGCTTCGGCGCGGGCGGCTTTCGCTTCGGCCTTCTGGGCGCGGTACTGCTCCCACTCGGCCGCCTGCGCCCATGCCCTGGCCGTGACGGTCTCGTGCAGTTGACGGTCGGTGACCGCCCGCCGCTCGGTCTCG # Questionable array : NO Score: 4.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-1.53, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [9-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //