Array 1 13232-14480 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAUD01000121.1 Streptomyces lushanensis strain NRRL B-24994 NRRL_B-24994_contig_121, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13232 29 100.0 32 ............................. CTCGCGTACATGGCGGCGCCACCGGCCACCAG 13293 29 100.0 32 ............................. GCGGGCGCATCCGGAGACATGCCGCCGGTCCG 13354 29 100.0 32 ............................. TTCTGCCGCAGGGCGTCGAGCGGTTGGTGTTC 13415 29 100.0 32 ............................. GCCAACCGGCCCGAGGGCTACAGCACCTTCGA 13476 29 100.0 32 ............................. GATCGGCCGGCCGGAGCGGCGCACGACTGCCT 13537 29 96.6 32 ............................A TCTCCATGGGCCACTCCGCGGGTCTGCGCACC 13598 29 100.0 32 ............................. TGCGCGCGGTGTGGTCGGCCGGTCTGTACGAC 13659 29 100.0 32 ............................. TTCGTGTCCGTGCGGTCCGTCGTGGTCATCCG 13720 29 100.0 32 ............................. GCGGCTCCGGTCCGCTGGCCCGGATGCAGGAG 13781 29 100.0 32 ............................. GCCCGCACCAGCGGTGCGGGCCTTCGTGGCGA 13842 29 100.0 32 ............................. CCGCATGCCGCACCCTCGACCTCCACGGCCTG 13903 29 100.0 32 ............................. TCGGCCAGCACCACGTTGTACGACTCGCCGTT 13964 29 100.0 32 ............................. GTGAGCCTCGATCCGATTTCCCACGTCGTCAC 14025 29 100.0 32 ............................. ATGCACGGCAACCGCAGCCAAGCCGTTGTTGC 14086 29 100.0 32 ............................. GCCGCCGTACCGGGTGCCTGGCCGGTGAAATC 14147 29 100.0 32 ............................. TCGGGGACGCGGCGGTACCTGACGCACACGTC 14208 29 100.0 32 ............................. CGGGAGCGCCGATCTGCTCGGACACGACCGGC 14269 29 100.0 32 ............................. AACTCGCGCAGCTTGTCCAGCATGATGCGGTA 14330 29 100.0 32 ............................. CCGGTCCGGCTGACTCCTGATATGGCGTACAT 14391 29 100.0 32 ............................. CCACGGGGGCAGGGACATGACGGGCTGAGCCT 14452 29 93.1 0 ..A.....................C.... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGGTCCCCGCGCAGGCGGGGGTGTTCCG # Left flank : GCGTCATAGAAGTCCCAGATCGAGAGACCCAGGCCAATTGGGTCCTGACCTGGGCCTCGCGTGGTAGGCCGCGTGGGACTCGAACCCACAACCAACGGATTAAAAGTCCCGGTCGGGTGGTGCCGGCCCGCTCCGCATGATGGTTCGCTGTCCAGAACCACCTGGTCAGAACACTCCACGATGCCGTGGGATCCACCCCGAAAACGCCTCGTGCCACCCCATCCGCTCACGCATCGCTCACGCAATCCACGCCCTGACCGGGTGCGTTTAGCTCTTCCGGTACTGCGGCAGTTCTCCCTGACCGGGCTAGGCCGACGACCTGTCGCGCGACCAGGTAGGCACTCGGTTCAGCCACGACCATGGAGGAGCACCGTTCCGCCTGGCCATCGCGCTTTCCTAGCGACGGGGACTTCACCACACAGCTCTGACACCATGGGGTTATGCAGACGAGCTTTGGTCAAGCAACGGCAAAACCCCTCTAACGCCGCAGCTCAGGAAGG # Right flank : GCGAATCACCGCGGAGCCACTCATCCGCCGGTTTACCCTCACCCGCGCGGGAAGCACTCATGGACGGAATCCGCACGGTCTCTTCCCTCCGGTTCACCCCCGCCCGCGCGGGAAGCACGCTTCCCGAGCTGGGGTTCTAGGCGCCGTTTGCCAGTTCCTGGTATTCCTCCGGGCGGAAGGCGACAAGGGTCAAGCCGTCAAAATCAGCCAGGGCTCTGCGACGTTCGCCCGCCGTGTGGAGGGTGTAGCCCTGTTCGTTCGCTTCCGGGTGGATCAGCACGGCGGCACCGGAGCCGATCGAGGCGCTGACCACGCGCCAGAGTTCGTCGCGGACGCGGGCGGAGAGCGTCCCGACGTAGAGGCCGGGGGTGGGCTCGATCATCCAGCGGGTGAGGGCACCGCGCACGTGGTCGGGGACAGCAGTGGTGGAGAGGACCGTCATGGACGGCATGAATCACCAGTTTCCTTGAGGGCTGGTAAAGGCTCGGGGGCCGGCGGGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCAGGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCAGGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 25014-27177 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAUD01000121.1 Streptomyces lushanensis strain NRRL B-24994 NRRL_B-24994_contig_121, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25014 29 100.0 32 ............................. AAACCTCCCCACTGTGCAACCGGGGCGCTCAA 25075 29 100.0 32 ............................. GCAACCCTTCCCCGTGGACACCCATTGTCCAC 25136 29 100.0 32 ............................. CCCGCGGTACGACATCGCTCCGCGTCAACAAA 25197 29 100.0 32 ............................. CGCGCCCGCCCGAACTGCCTTGATGTGGCTCC 25258 29 100.0 32 ............................. AGGATTGTTGGCCGGCCGTTGGGGTTGGACAC 25319 29 100.0 32 ............................. GGCCTGGGCATCGCGCTGGGCGCGCTGGTCGG 25380 29 100.0 32 ............................. TGGCCGCACAGCAGGGCGCCGACCTGAATGAG 25441 29 100.0 32 ............................. GATTCGCAGGGAAGGACCGTCTCCGTGACCGT 25502 29 100.0 32 ............................. CACCCCGGGCCGGAGTCGAACCGGCCCTGCGA 25563 29 100.0 32 ............................. CGCGCCTGGGAGGGCTCCCGCGTCGCGGGCTA 25624 29 100.0 32 ............................. CCCCTGGCCTCGGCCCTGGCCCGCGCAATACC 25685 29 100.0 32 ............................. GTGATCTGACCATGGCTTTCTTCCGTAACCGC 25746 29 100.0 32 ............................. GTGACCAGGTCGCCTACCGCGATGGAAGACAG 25807 29 100.0 32 ............................. CTGGGCGCGGGGCTGGGAGCGGGCCGGTTCCA 25868 29 100.0 32 ............................. GGGATCTTGCAGGTGTACGACGACATGTTCGA 25929 29 100.0 32 ............................. GCGACCGGCGCCGCGGCTGCGGCAGGACTGGA 25990 28 96.6 32 ..........-.................. GAAGCCCGCAAGGCCGTACCGCCCGCCTACAC 26050 29 100.0 32 ............................. GCGCTCCCGAGGATCGCGTCCGCTCTCGATGT 26111 29 100.0 32 ............................. ACCACCCCGGCTGGGGCTGCGGTCACTCCCGC 26172 29 100.0 32 ............................. TACTGCGAGTTGGCTGCCCGGCGCCTGTCGGC 26233 29 100.0 32 ............................. CCGCTCGGCAGTTCCGCCGCGACCTCGGCGTG 26294 29 100.0 32 ............................. GGGGCGTCGGGGGATGCCCCTGTCACCGTCGC 26355 29 100.0 32 ............................. GCTTCCACTTCATCGAGCAGGGCCGCGCCGTC 26416 29 100.0 32 ............................. TCGTACTGCGCCAGCAGGCGCGAACACTTCTC 26477 29 96.6 32 .....................A....... ACACCTTGGTCTTGTACTTCTTGTTGTACGCA 26538 29 100.0 32 ............................. TCGTCCTGGGTGACCTGGGCAACGCGGTACAT 26599 29 100.0 32 ............................. GGAGGGCCGCCCCAGCTTCACAAGGCGTCCTA 26660 29 96.6 32 ............................C GCGGCACGGTGAGCTGCTCCGCGAACCAAGCC 26721 29 100.0 32 ............................. CCGAGCCGGAGCCTGCCATGGCCAACTCGTGG 26782 29 96.6 32 ........A.................... CAGTGCTACGCAGTCGACCTGGCGGCGCTGGC 26843 29 93.1 32 ..........................TT. GTCCCCGTGCGGCTCATCGCTGAGCAGCACGT 26904 29 96.6 32 ......G...................... GAAGCCCGCAAGGCCGTACCGCCCGCCTACAC 26965 29 100.0 32 ............................. GGCGCGTCGTGGCTGACGGACACGATCGCGGG 27026 29 100.0 32 ............................. CGCGTTGGGCTCAGCGTACGAAAGGGCACGGC 27087 29 96.6 32 ........A.................... GGGCTGAACAGCGTCAACAGCAGCCCGTCTGC 27148 29 79.3 0 ..........TT.....AA...C..A... | T [27157] ========== ====== ====== ====== ============================= ================================ ================== 36 29 98.7 32 GTGGTCCCCGCGCAGGCGGGGGTGTTCCG # Left flank : AGTAGCTGTGGAAGCGCTCGATGAGTGGCGTACTCATGACGGACCTTCTTGACCCTGCTGTCATTCACCCGGTCATGCGTGTAAGCAGCCTCACGGAGAAATCCACAGTGAGCCGGCCTCTCCCGGACGGCCAAGTCCTGGAACTGCGGCATAATTTTCCCGAGGTCATGAAGCCCGGCCCAGAACATGACAACCCGCCGGGCCTGCTGTAACTCGACGCCTAACGCTTCCGCGACACTGAGGCGCTGAGCGGCAGTCAGGACCCCGTCCCAAACGGCCCCGCAGACCATCGCCGAATCCACGAGGTGCCCGATGACGGGGTACGGCTTCGCAAGCCCGTCGGACTTCCCCCAAAGACGCGCGTCGATCATGTCCCGCCCCTCCGAGTGCGTTGTCTCACTGAGGGGTACTTCACCACATGCCTCTGACACCATGGAGGCGTGAGGACGAGCGATGGTCAAGGAACTGCAAAGCCCCTCTAACGTCGCAGGTCAGGAAGC # Right flank : GCTGAGGACGCCGACGCCTGTGCGGACGTCCTCACACCCATGCCGCCATCAGAGAAAAGATGCCCGTCGTTCACGTCCTACGCACGGCGCAAAAGCGCCCCCGGGTGGGAAGGGCTCGGTCTGTCCCTACGGCCTCCCCCGAGCATGCGGCGAGTCGCCTCGGCGTGGCCGATCAGTCATCCGTATCTACGGTCGTATTGCATTTCTCTATCCGCCCAGCTTCGGGCTTGAAGAGTGGGACTTGCGGGCGGGCCGTCACCCTCGCTGGGCGCGGCCCACCCGCTGCACATCAGCTACTCGGCGAAGAGCAGTGTCGGCTCGGCGAGGATGTCCCGGTTCAGTTCGCTCTTGTAGATGAGGTCGATGCTGCCGTAGCGGGCCTGTTCGTAGTCGAAGCCGAGTGCGGCCACCGCTTTGCGGACTGCTTCTTCCGAGGGGCCTTCGATTTCGATGAAGGTGGCGAGGTCGGGCCAGGTGTCGAGGTCGTAGGTGATGTCGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCAGGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCAGGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5-949 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAUD01000021.1 Streptomyces lushanensis strain NRRL B-24994 NRRL_B-24994_contig_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 5 28 100.0 37 ............................ ACAGAGACCCGACCGTGTCCTAGAAAGACCAGCATGC 70 28 100.0 38 ............................ TCCGGGTCCGCCGCGGTGTTGCCGGTGTCGAGCCGGGC 136 28 100.0 39 ............................ GCGAGCGCGGCCCCGACACCGGGGTGCATGAGGGCGAGG 203 28 100.0 36 ............................ CCCAGCGATGTCGAATGGACCTCGAAGGGGCGGCGG 267 28 96.4 38 .........G.................. TACGCCGGGCGGGTGCCGCACGGTGCGATCGGCCGGGG 333 28 96.4 38 .........G.................. GCTGCGGCGAAGTCGACCTGCACACGGGGCTCTACGGG 399 28 96.4 37 ........................T... CGGTGCGCTCCTGGATCACCGGGTTGGTGATGTTGTG 464 27 92.9 37 .................-......T... GAGACAAGCCCGTCGGCGGGCGCCGCTGCCCCGGCAG 528 28 96.4 39 ...............C............ AGCAGCCAGGTTCCCTCGATCGCCCGGGAGGACTGGGGC 595 28 100.0 35 ............................ GCTGCCTGGTCTGCTCCAACCCCGTCCTGCCCGGC 658 28 96.4 39 .........G.................. GGGACGGTGCGGTTGCTTTCCCAGCCGCGGGCTTCCAGG 725 27 96.4 38 ....................-....... CTGATGACGTGGGTGAGATTCGGATCCTGCGTGGTGGG 790 28 96.4 38 .......................A.... CGCCAGGTGACGGTGAGCAGGAACAATTGGCCGGGCGG 856 28 96.4 38 ..............A............. AGCGCCTTCCGCATGATGATCTTGCCGGTCATCGCGTG 922 27 92.9 0 ....................-...T... | C [948] ========== ====== ====== ====== ============================ ======================================= ================== 15 28 97.1 38 TCGTCATCAACCCAGGAGGGTTCGCAAC # Left flank : GCGCT # Right flank : CCGGTCCGAGAGCGAGATGGCGCCGCTTCGAGCGGCCTCAGCCGACAGCCGCTACGTAACTCTGATCCGTCGGCCGAAAGAGCATGCCCGGCACCGATGCCCTCTGTCACCTCTGCTGCGGCGACAGAGAAGTGGCACCTGTCTCGCACCGCTGCCGCACCAGTAGAAGCGGTGAACCACGGCCAATTGCGGCACGTGGCGGCTGCTCCACAGGTCACGCCCAAGAGGCACTTAATTCGTTGACCTGCAAGGGAGCGAACAAAACGCCTGTGATTCCCAAGCTCAGAGCGCGAGTTTGATTCTCGTCACCCGCCCCGTAAGAAAGCCCCAGGTCAATAACCCGGGGCTTCGTTGTTGTCTAGACCATTTGCGGCTTGACCAGCCCTCCGCCAGCCCTATCCCCTGACGGAGGCCAGGTTCCAGCGAACTTCGGCACCGCCTCGATGCCTTTCCGCGCCAGGCTTCTCGAATGGCGAGACGCATTTCACGTGAACTGGTTC # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGTCATCAACCCAGGAGGGTTCGCAAC # Alternate repeat : TCGTCATCAGCCCAGGAGGGTTCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.70,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 2 21100-20295 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAUD01000021.1 Streptomyces lushanensis strain NRRL B-24994 NRRL_B-24994_contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 21099 29 100.0 36 ............................. CAGCGCTTGCAGGCCGTTGCCCCAGGACGGCGCAGC 21034 29 100.0 34 ............................. AACTTCGTAATGGTGCCGAGCACCCTGCCGTCAC 20971 29 100.0 36 ............................. TTGATCCAGAGGGACATCTCCGGCGGGAGCTGGGCG 20906 29 100.0 36 ............................. CCGGAACCGATGCTGATCACGTCCCAATGGCCCGAC 20841 29 100.0 35 ............................. GCGGGCGCCGGCGGGGCGGATACCTGATCACCGAG 20777 29 100.0 37 ............................. GTCCGCAGATGAAGGACGAGGAGCAGGCCATCACCAA 20711 29 100.0 36 ............................. TCGAGCTTCGGGCCCAGAACGCCACATGGGAAGAGA 20646 29 100.0 35 ............................. CCGGATATGCCCTGCATGAGCGCCCGACGGGCGCC 20582 29 100.0 36 ............................. GCGGCCGCCGCGCGGCCGGTGCGCCACCAGCTCTTC 20517 29 100.0 36 ............................. TGGTGACGCCGTACGAGGAGCTGCGGACGCCCGCGC 20452 29 100.0 35 ............................. CCGTATCGGCCACCGCCTTCACCACCTACGAACAC 20388 29 100.0 36 ............................. TGCCCGAGGATCTCCTGAGTGACGACTTCGGGCACC 20323 29 96.6 0 ...........................G. | ========== ====== ====== ====== ============================= ===================================== ================== 13 29 99.7 36 GCCGTCATCAGCCCTGGAGGGCTCGCAAC # Left flank : GCCCTTCCACCCCTTGTCATGCAACGACCGGGCCATGGCGGCGTCCTGGCTCCCCAGCAGCTCGTACATCACGGCACGCGCCGGCCCGTGCACGTCCTCCCACCGCAGGCTCGGCACGTCCGCTCCGACGTCCACTTTGACCCGCATCACACCCCCAACGTTTTTGACAGCAGCGGTCGTTGCTGCACCACGAACCGCACGACCGTGACTTGGTCGGAGCCTAGCCGGACAAAGGAAGAAAAGTAGCAATCGGCTATAAATCACACCAAAGAGTGAATTTCGCTGATAGGGGCACTATTTCAGTGCGAGCAGCGCTGAAGCTGCCTGCTGTGGGGCCGAACCCGTAAGCTAACGGGCACCACTGACAACCACCCCGCGACAGCCGTAGCCGCACTTCGCCCAACGCTCTGACCTGCACTGATGCATCACTGCCGGATCGCTGCAAAATCCGCCCCGAGACGCCGCTACAAGACGGCTCTGACCAGCGATTTTACCCTCGG # Right flank : GCGTCCGTGGTGAACTGGGCCAGCGCTATGGACTCCACCTTGCGCTCAGCTTGTCATCGAGCTGCCAATCGGAAGGCGAGACTTCCCAGGGTCCACTTTCACGCACCCGTTTCAGTGGGGAATTCTTATGTCACGCCCCTAGTTCTCCGCTGTTCGCATGTCGGCCAGTTCCAGGGCTGTTTGTTCCAGGGCCAGTGCGTTGGCGCCTTTGATCAGTACGACGTCGCCGAGTTTGAGCCGGGCGTTGATGTGCTGAGGAAGGGAGGGAGTGCGGTCGGTCTTGATGGCGCTTGCTCCGCCTTTGCGGATGGCGGCGGTCAGCCGGGTGGCGTGTTCGCCGCCGATGCCGATGGTCAGAGCGATCCCGGAAGCCAGGACTTCTGTGGCGATCTTGTCGTGCCATGCCTCCGTCTCGGGGCCGAGTTCGGCCATTTCGCCGAGGACGGCGATCTTTCGGCGATCTGTTCCGGCGATGTCCGAGAGGGCGGTGAGCGCGGCGA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGTCATCAGCCCTGGAGGGCTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.20,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 29657-29816 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAUD01000021.1 Streptomyces lushanensis strain NRRL B-24994 NRRL_B-24994_contig_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 29657 29 100.0 36 ............................. CAAAAGGAGGCACGGAGCGCGGTCGGCCACATCCTT 29722 29 100.0 37 ............................. ACCGCGAGGCCGATCGCCTGGGCGAGCAGCTGCACGC 29788 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 3 29 100.0 42 GTCGTCATCAACCCAGGAGGGTTCGCAAC # Left flank : CGACCGTCCACCACCGCACGCTCAAGCGCAAAGTCAGCTACGAGGAACTCATCCACCTCGAAGCCCTCAAGATCGTCCGTATGTGCCTCGAAGACAAGCCGTACAAGCCCTTCCGCCCCTGGTGGTGACCAGCCATCTTCGTGATCCTCGTCTACGACACCGCCGTCGAACGCAACCCGAAAGTCCTCAAAACCTGCCGCAAATACCTCCACTGGACCCAGCGCAGCGTCTTCCAGGGCGAACTCACCACAGCCCAGTACCGTGCCCTCATGGCCGCCCTCAACACCACCATCGACCCGGAATACGACAGCATCGTCGCCTACACCACCCGCTCCCCCGACATGATCGAATCCACCACACTCGGAGTCGACCTAGGCGGCCCAGGAGACATCCTCTGAACCGCTCTGACCTGCACAGATGCACTACCGCCGGACCGCTGCAAAACAGCTCGCGAAGCGGCCAATCATCAATGCTCTGACCTGCGGTTTTACCGTCGGGAG # Right flank : GAGGGAGCAGGGAGGGTGAGCAGGGGGCTGTAGTCGCGCTCGTCATCAACCCAGGA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCATCAACCCAGGAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.70,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 2232-1898 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAUD01000412.1 Streptomyces lushanensis strain NRRL B-24994 NRRL_B-24994_contig_413, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2231 29 96.6 32 .................A........... GCACGTCATCTTCCCCCTGGTGGAGCGCGAGG 2170 29 100.0 32 ............................. AACGACCCGGACGCCACGCTCGCCCTGTTCCA 2109 29 100.0 32 ............................. GTGATGACCGAGACGATGAAGGCGTTCGGTGG 2048 29 93.1 32 ..............C.............G ATGCACATGCCGAAGCACCAGTCGACCCGTGA 1987 29 89.7 32 ..........T...CA............. AAGAAGAAGGGCGCCACGGCTGCCAAGAAGGC 1926 29 79.3 0 A...........T.C..A...G....A.. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 93.1 32 CTGCTCCCCGCGCCTGCGGGGATGGACCC # Left flank : CACAAATGGCACCCCGTGGACCACGAGGGACTGACCCTGATCCTCCGCCCGTCGGAACGACCCGCTCCTGGAAGCGCGTCTTCTGCGGTGGATGCGGGTTCATCCGGCACGTCGGGCTGGAGCAAGGCGTCCAAGCGTCGAAGATTCGGCAGCCGCAACCGCAACCCATAGCCGCCACGACGAACACGCTGGGCGACGGCTCTCCGTTTGTCCACACGAGGTGCGGTTAACGCTGACCGCTCCGGATTCCGGCCGATGGGTGCTGCCTGAGTGCGTTGGCCCGGCCGCGCCCCGCTGTGGCTCTTTACAGCCCGTCATTCGCACTTAGCGCCTTGGCCATCCAACAAGGTAGGGGAGAGTAGGGGTCGAAAGTGGCGAGCGTATTGTCGCCAGCGCGAAGTCGGTGTCATGTGATTTCGCAACCTTTGCCACTTATGCCTGTACCTCTTGATGTTGTCGAAACTGGCGCTACCGCACACTAAACCCGCAGGTCACGCAGC # Right flank : TTCTCTTCCTCACCAGCGTTCGAGAGCCTCCGGGCCCCCTCCAACGTGGTCAGGTTACTGACCAGCTTCGGCAGCCAGTCTTGGGGCGATTCGTGCACATCGTGCGGCGTAGTCCTGGAGATGACGGGCCTTGAACTGCTCTGCGTCCCAGTCCTCGCTGCGGACTTCGCCGTCGGGCCAGACATAGGCAAGCCCGCGTCCTCCGGAGGTCAGGCGCACCTCGCGTAGGTCGTATCGGTCATCTTCGAAGGCGTCGAGGATCGCCCACTCCCGCTCACTGAGATCAGTGAGCAGCAAGCCAGGTGCCGCAGCGTCGGGGGACGCCACGAGCCCGGGGTAGACGCGTCCCTCCAGGGACGCCGCGCGCCAGCCGGGCGCGCTGGTTGTTTCACCCTGGGGTATTCGGTCGATCAAGGCTTCGAGTACGGCATCGAACCGGAGCGTCCCGTAAGCGAACAGGGCCGCGGCCTCTTGCGGAAGTCGGCGCTGGGGGCCAGGAG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCTGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCTGCGGGGATGGACCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 13322-12985 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAUD01000412.1 Streptomyces lushanensis strain NRRL B-24994 NRRL_B-24994_contig_413, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 13321 29 100.0 32 ............................. AAGCCGACCGCGACGAGCGGGACCGGGCGCGG 13260 29 100.0 32 ............................. GCGGCCATGGACGAGCGCGAGAAGAACGCTCC 13199 29 100.0 32 ............................. AAAACACTGACGGCCCCCGCCATCACGAATCC 13138 29 96.6 32 .............T............... GCCGGGGCTGTTCGGGACCAGCGGCCCCAGAT 13077 29 96.6 33 ..............T.............. ACCGAGGACGGGGGCGTCCGGCAAGGCTGGTGT 13015 29 89.7 0 .............TT.............T | A,C [12994,13005] ========== ====== ====== ====== ============================= ================================= ================== 6 29 97.2 32 CTGCTCCCCGCGCCCGCGGGGATGGACCC # Left flank : CCGCGCCCGCGGGGATGGACCAGCATCCGCTCAAGGTTCCGCCGGACGGAGGG # Right flank : AACTTGTCAGATTCCGAGCCGGTGGAGTCGCGTGGGGCGCCGTTCTTGGTTGAGCGGAAACCAGAGGTTTTTCCTAGGTGAGGCGAACGCTTCCCTGGCGATTGGCGGGCTTCCAAAGACAGGCGCACACAGGCAAGCCGTGGATTTGGCGCTGGGGATCCGCAGGACTGGTGACTGGCCGGACCCGCGAGTTGTCCGGGTTCGTGCACGGGTGCGACGTGAGCGAGGGCGCCACGGCAGCACGGACTCTCCGGACCCCGGCTCTGACGCTCGACGGATTGCACCACCAGCCGAGCAGGTAAATGACGATTGCCGGGCAGAGCTGCGAGACGGGCGCAGCAACTTCAACGGTCATTTTATCCGCCAATCATGTAATTCGCATTATCGACGAGCCTGGTACTGGCATGGCCCAACCGGGTCTGACGTTTTGAACTATGGCAGAGGCTATCCCTGAATTGCGGGCGTTCGATACCGCCGCGCCGTGAGTTAGATGTGTCCAA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCTGCGGGGATGGACCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1508-477 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAUD01000169.1 Streptomyces lushanensis strain NRRL B-24994 NRRL_B-24994_contig_169, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1507 29 100.0 32 ............................. GCCGGCGCCAACATGAAACGCCCGCGGCCCTT 1446 29 100.0 32 ............................. GACTGCCTCCATAACGGTCGGGTGGTCGGGCT 1385 29 100.0 32 ............................. ACCATGTGGATGACCCGGCCGAGAGCTTCGGT 1324 29 100.0 32 ............................. CCTTACGGTGTGCCGTACTGGTTCGAGTCGCA 1263 29 100.0 32 ............................. ACACCCTCTCGGAGAACGTCCGCAGGCTGTTC 1202 29 100.0 32 ............................. CCCTCGTCCCACAGGTCCAGGCCGGGCCGATC 1141 29 100.0 32 ............................. GACCGGGTTGGGGTCCTCGCCGGGCCGGATGC 1080 29 100.0 32 ............................. CCACTGCTGGTGACGCCGGTGGCGCCGACGCC 1019 29 100.0 32 ............................. TCGTCGTACTCGGTGACCGTTTCCCAGGTCTC 958 29 100.0 32 ............................. ACGAGGTCGTCGGGGTACAGCTCGGCTGGGTG 897 29 100.0 32 ............................. TCCCCGTTCTGGCGTCCGGACTGGCACAAGGC 836 29 100.0 32 ............................. AAGGACCGGGCCCGGGTTCGGAACGTGAGGTC 775 29 100.0 32 ............................. GACAGCGGCGGCCCGGCTGGGCGCCTGTGCTC 714 29 100.0 32 ............................. ATGTTGTCCAACGGGTCCACGTCCTCTTCGAC 653 29 72.4 0 ..................ATC.A.CAGT. - Deletion [625] 624 26 89.7 32 ---.......................... GGTGATCGGGCGAAGCCGGACGGCCCGAAGGT 566 29 100.0 32 ............................. GCCGAAGACTTCTACCGGCCCGCCCACAGTGT 505 29 79.3 0 ..................C....CCC.TT | ========== ====== ====== ====== ============================= ================================ ================== 18 29 96.7 30 GTGGTCCCCGCGCAGGCGGGGGTGTTCCG # Left flank : TCGATTCCGTTCCAGTGATGAAAGAACACCATTGACTGTCGCAGTTCTTGGGTGAGATATCCGGGGACCTTGTCGCGGTACGGATCAGTTCCCCTGGACAACACGAACGGTGGCCCGGCCTGGGGTCGTGTCCGGCCCGTTGCGGCCCGAGGTCGCCTACTCCGCAACCCGCCCTCGTGCCGTACACATATGGCCGCACGAAAGAACCCTCCAAGCATCAGCCAGCTGGGCCAAGCACCACGCTCCGCGCGCCACCACGCCACTCAAGTTCCTCGAACCACGCCTCTGCCCTCCGTTACACGGAGAGCAGGCGGTCCACCAAAAGATTGATCGACTCACCCATATGACGAAGGGCCGCGGTTGGACGGCCAACTTCTGGAACTGAGGCGTGATCTTGCTGATCGTGGAGCCTGACCGTGTACCTCTGACACCATGGAGTGATGAGAACGAACTATGGTCAAGTATTGGCAAAGCCCCTCTAGGATCGCAGGTCAGGAAGG # Right flank : TGCAGCCAGCGTCTGCCGATCAGTCGTCAGAACCGGATCAGCGCCTGGTTCAGGGACATCAGCGCCCCTGCCCCACGACTGAATCGTGGCCGGTCGGTACAGGCTGGTGCCACGGAAGAAGCCGTCGGCGAGGGCGGCTTCGGCATGCCTCTCCGTGCGGGCGCCTCCTCGCGCTCACAGGGCGCAAAGCCCGCCGCCTCGTGCTCCCGTGTCCGCCGTCGTCCGGCCCCTCCGAGGTCCGTCCGCTCACGCATCGCTCACGCACAGGCCCCGAAACAACGGAGCGCCCCTGCCCGGCGGGACCGGGCGGGGCGCTCCGTAGCAGGTCACGGGCGTAAGCCCGGCCCGCCGACAGTAGGCCGTGTGGGACTCGAACCCACAACCAACGGATTAAAAGTCCGCTGCTCTGCCAATTGAGCTAACGGCCCTCGGCGGGCTATGCTCGTGTGTGTTGTGTCGCAGGGCCGTTAGCTCAAT # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCAGGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCAGGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //