Array 1 3986940-3984349 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011292.1 Salmonella enterica subsp. diarizonae strain 11-01854 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3986939 29 100.0 32 ............................. AGATGAACGCCAAAAAACATGACGAACAGCAG 3986878 29 100.0 32 ............................. GGCCATTGTGGGACGTATGAACCATCAACATA 3986817 29 100.0 32 ............................. GGGATCTGAGCAATACAGCGGGGAAATCAGCC 3986756 29 100.0 32 ............................. CAGCTATTTCCCAACATTGCCCGTGTTATTGG 3986695 29 100.0 32 ............................. CTTAACGGCGAGAGCGTGAAGGTGTATCGCTA 3986634 29 100.0 32 ............................. CCAGACAAACCCTGCTCGTTTCAGATGCTGCG 3986573 29 100.0 32 ............................. TGACTTTAACGCGAGCACCTTTGGTATTAGTT 3986512 29 100.0 32 ............................. GCAACTAATGTTAGTAAAAGTTAGCTAATAAG 3986451 29 100.0 32 ............................. ACAGCACGTTAAAGATGCTGGCGGTATCTGAA 3986390 29 100.0 32 ............................. TGGACGAGCTGATTGCTGCAGGACTTATTATT 3986329 29 100.0 32 ............................. ACTGTTAGGGTGACAACGCCGACCACAACGTC 3986268 29 100.0 32 ............................. GTACTGCTCTTCACCACAGTGCGGACACGGTA 3986207 29 100.0 32 ............................. ATTATGAAACTGCTGAAAAATTAGTTGTTGAC 3986146 29 100.0 32 ............................. GAATTGCAATCAGGCCTTTCTTCAGAACAAAT 3986085 29 100.0 32 ............................. TGTAATTTCATCTTCTCGCGGCGATCCAACTG 3986024 29 100.0 32 ............................. GCTGTTGATTATATTGGTAACTTTAACGATGG 3985963 29 100.0 32 ............................. TTACCAAAAAAGGAAATACCATACATGGATAA 3985902 29 100.0 32 ............................. CATAATTAGTCCCTCCAGATTCCTGGGCTTTT 3985841 29 100.0 32 ............................. AAAAATGAACAGGCATTATTAACATGGGATAA 3985780 29 100.0 32 ............................. GGTGTGTAACCACGTATAGGGTATAGCCCTGT 3985719 29 100.0 32 ............................. GCTTTCAGGGATTCTATAGTATTTATATATTT 3985658 29 100.0 32 ............................. ATATTAGTGGGCGCAATCAGTGTCACCGTCCC 3985597 29 100.0 32 ............................. GCTATTCAATAAATAAATCAATAACTGCATAT 3985536 29 100.0 32 ............................. TGCTGTATCTCGGTTGGTTCGATGGCAATCCG 3985475 29 100.0 32 ............................. TCCGTTAACCAGGGAAATGCCAGATGACAGCA 3985414 29 100.0 32 ............................. CCCTCAAATCAGACGCCGTTACCATCGCAGTT 3985353 29 96.6 32 ..........................A.. TACGCGTACAGGTCTGGCAAAATCAGCTTCAT 3985292 29 100.0 32 ............................. ACTGGTCCCGTGATCTTAACGCCAGGATTCAG 3985231 29 100.0 32 ............................. GCTACCGCCGATAACACGAAACGCATCGGCCC 3985170 29 100.0 32 ............................. CGCCCGGTTATCGCCAAAGAACGCCAGAATCA 3985109 29 100.0 32 ............................. TACATATCGAACTTGCCCATTACTAACACCTC 3985048 29 100.0 32 ............................. AATGGTTTTCCACCTGCAGCAGGAACGAGCTG 3984987 29 100.0 32 ............................. TTAGTTTGTGTTTTGTTGCTATGGGTTAACTA 3984926 29 100.0 32 ............................. CGTACAGCAACGGCGGGTAATGGCGAGCGAGG 3984865 29 100.0 32 ............................. CTGTTCCCGCTCGTTCAGGTCGGTAACCGGAC 3984804 29 100.0 32 ............................. TATGCACAGCAACCTTTTCTATCGGTGAACAC 3984743 29 100.0 32 ............................. CCGGAAAAACCACAGGCCAGCTTAATGCGATG 3984682 29 100.0 32 ............................. GGCTGATAATCCGGAAGATGTTGTTGTGGAAA 3984621 29 100.0 32 ............................. GAACATCAGACCTTATCACCTGGTGGCAATCG 3984560 29 100.0 32 ............................. CAGGAAAAAACCGGGGAAAACGGCAGCCGCGT 3984499 29 100.0 32 ............................. TTTGCGCTCGCTGACGTCAACAGCTTCTACGC 3984438 29 96.6 32 ............T................ CTGCCGGTCAGGCTGCTGAAGTTACTGTGGTC 3984377 29 86.2 0 ............T............G.TA | ========== ====== ====== ====== ============================= ================================ ================== 43 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCTGAGCCGGAATCTCTGGGTGACAGCGGACATCGGGGGCATGGTTAATGAGCATGGTGGTGGTGGTGACTGAAAACGTACCGCCGCGCCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGGGTTTATGTTGGCGATACATCAAAACGCATTCGGGAGATGATCTGGCAACAGATTACACAACTGGGTGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCAGGTTTTGAGTTCCAGACCTGGGGGGAGAACCGCCGTATTCCGGTAGATTTGGATGGACTCAGATTAGTTTCTTTTCTTCCCGTTGAAAATCAATGAGTTGAACGTTCTTTAATAATAAGAAATTGTTATCTTAATGTTGGTGGATTGTTGGGTGGCAAAAAAGGCTTTCTGGAACAAATATATAGATTTAGT # Right flank : TTTTTACCAGCAGATCAGGATGTCTTTTCCGTCTTCGCCAGCTCTTTTACTAGCGGCAGCATTATCCGTACTACGTCGCGACTACGGCGCTCAATTCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAAGCATTTTTCGCGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTTGTCGCCTCAACGGAAAGCACAGAAATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGAGCCCCGGATTGGTGCTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGATTATCGAAATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //