Array 1 22151-23558 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAZQZ010000022.1 Acinetobacter johnsonii strain AJ1 NODE_22_length_59739_cov_136.541383, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 22151 28 100.0 32 ............................ ACAGCACCACGACGAAGTTCACCTGTACGATG 22211 28 100.0 32 ............................ TGAAGAGTTAGACGTAGCAAAGTCGCTGGGTG 22271 28 100.0 32 ............................ AATCATCAGGAGCAAGTTTAATTCCTGTATGT 22331 28 100.0 32 ............................ GTGCTGCATAGAGGGGAGAGGCAAGTTAGACA 22391 28 100.0 32 ............................ ATCACCCGATACCGCGCCACCACCACTTCCAG 22451 28 100.0 32 ............................ TAGACCAAGGTGTTTACCGCGATCTAACAATT 22511 28 100.0 32 ............................ TGTTACTTGAATTGTCATGCTACCCATACCCC 22571 28 100.0 32 ............................ TGTGGTCACAAGCTTACTCATACTTTCACTAA 22631 28 100.0 32 ............................ GTGATGGCCCAGTACGCGGCTCGCCTGTAATC 22691 28 100.0 32 ............................ AGCACCAACCAACATAGTCACAGCTTCGGCAA 22751 28 100.0 32 ............................ TTTACGGCTTTGACGATCAATAAACTCTTGGT 22811 28 100.0 32 ............................ TTACTATGTTGATGGGGATCAATCACACTACA 22871 28 100.0 32 ............................ TCGTACATAGTAAATAAGTGTTGCGATATGGT 22931 28 100.0 32 ............................ CTTATAAATCTCAAGCAATTCCTTATCACCAA 22991 28 100.0 32 ............................ AGTGATTGTTTCAGTTAAAAAGTCTAACTCAG 23051 28 100.0 32 ............................ ACTAGCGGCTTGCCCTGTTCAATTGCTTGCTG 23111 28 100.0 32 ............................ TGATGAGGATATTCCAAGTGACCCAATCCTCT 23171 28 100.0 32 ............................ AACAAGTATTGAATTGGAAAGATGCACCGCTA 23231 28 100.0 32 ............................ TTAGAGGATGGTTATGAAGTTGTACTGAGTCG 23291 28 100.0 32 ............................ ACCTGAAAGTTGGCAAGAAGACCAATGGCCAC 23351 28 100.0 32 ............................ TGTATTCAAACGTGGTTCGTAGTGAGCATTCA 23411 28 100.0 32 ............................ TGAAGAACTGGCAGGAATGACCCCACAAGAGC 23471 28 100.0 32 ............................ TGTTTTCTTAAAATGGTAACTGACTGCATCAA 23531 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 24 28 100.0 32 GTTCACTGCCACATAGGCAGCTTAGAAA # Left flank : TCAAGCTTTACAAAGGCTTTAATTAAGCAAAGAATTGAGGTGGCTCGGCATAACTTCTGTGAGGTGTGTGATGGCTTATTACATTTAGATAGTATTGAACACGACCATATTATCGCACGCTCTGTTGGTGGTCGCGGTGATGTGGATAATGGAACCTTACTGCATCCATATTGTAATCGCTTTAAAGCAGATCGTGAGTTAGAAGAAGCTCGGGCTGATTTATTTGGCTGAAGCTTTGCTGGGAATGCTTGATCATGTTTAAAGCATGATCAAGTATGATGTATTTCTTAATTGAGCTCGATTTTAATGTACAAAGTAGATATTCGCGTTGGACAAGGGTAAAAATTAGATAAACTAAGCCAAAAATAACCCAATATTTTTTAGCTCTTTAACAGTTTAATAAAATCAATAGTTTATGATTATGGTTTAAAATTTAGGTCTTTTTAAAGATTCAGGGCTTAAATCATTGTTATAGATTTATTTTTTACGCTAAAATTACT # Right flank : ATACAACAATGGAAGCCATTACTAGGTTGTTTTATACGAAGATTTAAACTAGAGCGACATATTGTGTCGTATTGTAGAATTATCATTATGTTATAAGTAAATGAGTCGTTTATAATGCAAGGTATTCATTCTAATCATACTTATAAAGATGGAACAACTAAATCCTTCAGACTTAAAAGCGATCTTACATTCTAAACGAGCTAATTTATATTACTTAGAACATTGCCGTGTCATGCAAAAGGACGGTCGTGTTTTGTATTTGACCGAAGCCAAAAATGAAAACCAATATTGGAATATCCCGATTGCCAATACCACAGTGCTTATGCTTGGAACGGGGACATCCATTACTCAAGCCGCGATGCGTATGCTTGCCAGTGCCGGGGTACTCGTTGGCTTTACCGGCGGTGGTGGAACCCCTCTATTTATGGGCTGTGAAATTGAATGGATGACGCCACAAAGTGAATATCGCCCAACCGAATATATGCAAGGTTGGATGCAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCACATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCACATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 32107-37538 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAZQZ010000022.1 Acinetobacter johnsonii strain AJ1 NODE_22_length_59739_cov_136.541383, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 32107 28 100.0 33 ............................ CTAAGATGATTTTACTTTGCGTCTGTTCACACC 32168 28 100.0 32 ............................ AACATGCAAAGTGCTTACAGTGCTGGACGTTA 32228 28 100.0 32 ............................ ACTTGTTCGGCATACATCAGGAAGTCGTTCCA 32288 28 100.0 32 ............................ ATGTTCTTTCTCCAAACGCAGACCCTCTTTCA 32348 28 100.0 32 ............................ CGACGCACGCAATGTACGCACAGGTGCTTAAA 32408 28 100.0 32 ............................ GTGATTATGTTACTTCCGTTGCAATTGTTACA 32468 28 100.0 32 ............................ TAAACCCGCCCCCATGAGCGCAGATCGTACAG 32528 28 100.0 32 ............................ TGATAGTAATTACTCAGTAAATTATTGGTAAT 32588 28 100.0 32 ............................ AGCACCAGCAGCAGCAAAACGAGCTAACCAAT 32648 28 100.0 32 ............................ GTTGTAAGAGCCTTTAACAGTTTGAGAGCGAA 32708 28 100.0 32 ............................ GATGAAGAAACCAACAAAAACAACAATAGGCT 32768 28 100.0 32 ............................ AGCACCAATCAACATAGTCACAGCTTCGGCAA 32828 28 100.0 32 ............................ GACTACTGCGAGCCGACAAGTCAGTTCAAATA 32888 28 100.0 32 ............................ TGCTCCTCCGCCTATGGACATAGCTTTAGAAT 32948 28 100.0 32 ............................ CATCGAAGCCTTATGACACGGTTTATCAAGTT 33008 28 100.0 32 ............................ TGTAGTTGCGCCTGATCTCTCCAGTGGACAAT 33068 28 100.0 32 ............................ GTCTTTAATAGACTCATAAAATCCATACAATT 33128 28 100.0 32 ............................ TTGAAAGTAATGGATATGCAATATTTAAATAC 33188 28 100.0 32 ............................ AATCAACACCAGCACCCAAAAGCATAGTAACA 33248 28 100.0 32 ............................ AGACATATCACAAGAAGATTGTAGAAAGTATT 33308 28 100.0 33 ............................ CAAAGCGGGCTTGCTATCAATGCTTGACTATAT 33369 28 100.0 32 ............................ TGCTGAAATCAGTGTATTCACATAGTTCTTAA 33429 28 100.0 32 ............................ TGTATAACTTCCTGTGGGTATGGCAATACTTG 33489 28 100.0 32 ............................ CAGTTCAGGACCCGACCGTGAAAACGCTCCCA 33549 28 100.0 32 ............................ GGACGGCAAAGACACACTCGATTGGGGCAACT 33609 28 100.0 32 ............................ AATTGCCCGGATACCCCTCACGGTCACAATTT 33669 28 100.0 32 ............................ AAGTGCCTGCGCCACGGCGGCTTTACATTGAT 33729 28 100.0 32 ............................ ATGTAACGATTGTTGTCTAGGAAAAAATACTG 33789 28 100.0 32 ............................ TAACGCATGGCTATTACTTGACTGTACCAAGC 33849 28 100.0 32 ............................ CACAACTGATCTACAAAAATTCATCGTAATTT 33909 28 100.0 32 ............................ AACCAAACTGTTTAACACACAAATCTATTTTT 33969 28 100.0 32 ............................ GGGGAAATCTGACGCATATACGTAAACTTGCT 34029 28 100.0 32 ............................ TTTTGGACAGATCAAGCGTATACGCTTGACTA 34089 28 100.0 32 ............................ ACTGAGTAGAATTGCCCCTGAACGATCACGGT 34149 28 100.0 32 ............................ TTGCTTATTTAAAATAGACAGAGTTGTTATAT 34209 28 100.0 32 ............................ AAAAACAAGTACAGCGAGATGCAGACGCTAAA 34269 28 100.0 32 ............................ TGATGTTGCCAAATCCTGCAACTGACCTTTTT 34329 28 100.0 32 ............................ TACGACGAAATCAATAAGCGATAATCTTGTCG 34389 28 100.0 32 ............................ AACCAAATGCAACTAACTGTTCGCGAGAGTAT 34449 28 100.0 32 ............................ CAAAGTACCAATGTCAATAGCGTCATCAGCAG 34509 28 100.0 32 ............................ TTGTAAATTAGATTCAAGTTGAGATTGAGCAG 34569 28 100.0 32 ............................ CGAAGAAAATCAGAAATCTATTCCCCTTACTA 34629 28 100.0 32 ............................ TGAAACTGCTGACCCTCGTTATAGTTATATTT 34689 28 100.0 32 ............................ ATCTTCAGCCTGCTTATCTGTAGATACACGGA 34749 28 100.0 32 ............................ ACGATAGAAAATACAACCTAACTTTGATGAAA 34809 28 100.0 32 ............................ ATTAGGACGTGCTACCACGGCGTTTGCAATAA 34869 28 100.0 32 ............................ TATGTATTCTAGTCAACAAGGAAGCAGGGACA 34929 28 100.0 32 ............................ TTGAGGGTGCAGGGTTTGAGATAGCACGAACC 34989 28 100.0 32 ............................ TATTGGGTAAAGATGCAAAAAAATAAGAAAAC 35049 28 100.0 32 ............................ GATAGTCTGCCCAGCATTTGTAACAGATGTAA 35109 28 100.0 32 ............................ ATCCACAGTAAGCGTCTCTTTCATTTCTACAG 35169 28 100.0 32 ............................ TGTTGGATATTGCTAGAAAAATGGCCTCTTAT 35229 28 100.0 32 ............................ GCAGAAAATGAGCGCGTATCCGCACATTTAAC 35289 28 100.0 32 ............................ CAGCATCCCGCTGCTTAAAACAGCGTGATATT 35349 28 100.0 32 ............................ TTTCGACTATCGCTACGATGCACCAGTGACAC 35409 28 100.0 33 ............................ CCCCAAAGAATTGCGGTCTAAGGAGAGTAAGCA 35470 28 100.0 32 ............................ TTTAGATGTCGTAGCTGCTCAAGTCATTTCTA 35530 28 100.0 32 ............................ CCATTCAGACGCCGTACCCTCTGCATCTAATT 35590 28 100.0 32 ............................ TTAGCTACACCTATTTTGGCTCTCTTAGACTG 35650 28 100.0 32 ............................ CCGAACCTGCACCACGACTATGTATTTTTATG 35710 28 100.0 32 ............................ AAGCAGCACTTGGAAAGCTACAAAGCCTTGTT 35770 28 100.0 32 ............................ AAGGCTTGCTCAGCCGCGCTTAAACCTGCTTG 35830 28 100.0 32 ............................ GCTAAGCCTGTCATTTCACTGTAGAAGTCCTG 35890 28 100.0 32 ............................ AGTGCGTGCGCTAGGATATCCCGCGCCGTAGC 35950 28 100.0 32 ............................ ACAGAAATTACAGTGCAGGTCGCCGAAATTTC 36010 28 100.0 32 ............................ GATTAATGTGGCTATGAATGACGCGTTATTAT 36070 28 100.0 32 ............................ TGTGGGGTAATTCTCGTTCGTACCTGCGGTTT 36130 28 100.0 32 ............................ TCCGAATAGACTCAAGTATGCGGATGATTCTA 36190 28 100.0 32 ............................ AGAGTGATCCCCCACTCCACTGCAGATTCAAT 36250 28 100.0 32 ............................ GTATAGCCCCGGTACTGCGACGTGAATGGGTC 36310 28 100.0 32 ............................ GTACGACAGCTCGATGGCTGACGCAGGGCTCG 36370 28 100.0 32 ............................ GATCAGATCCGATGACTTAATGTGGTCGTTCA 36430 28 100.0 32 ............................ TGGAAAGTCCGAGGCATACACGTAGACTTGTT 36490 28 100.0 33 ............................ AACGGGATATAAATACCCCTCACTCTCTAATTC 36551 28 100.0 32 ............................ GTTTGATGGGGTATAAATCTGCTTATCATTTA 36611 28 100.0 32 ............................ CAAGCCAAATCACTGCATCTATCTATATTCCA 36671 28 100.0 32 ............................ AACACCAGTAGCTAAGACTTTAGCGACACGAG 36731 28 100.0 32 ............................ GTCTATAACTGTTAAGGAATCGCAAATAATTG 36791 28 100.0 32 ............................ AAGACCTAAACCCGCACCCGTTAGCGCAGATC 36851 28 100.0 32 ............................ GACTATTGCACCAGTCAGGTTTCCCACGAATT 36911 28 100.0 32 ............................ ATTGTGGGATGCAGGAGAGCACAGCACAGCAC 36971 28 100.0 32 ............................ AGTAGGTAAGTTGGGGTTAAAGCTTGGTGCTT 37031 28 100.0 32 ............................ GTGGAGCTAAACCATGCTTGCAATGAATATTA 37091 28 100.0 32 ............................ TTGAGCTTTGCCCAGGTACAAAACAAGACCAG 37151 28 100.0 32 ............................ TTAAAGACTCCTAGTGATGCTCAAAAACTTTT 37211 28 100.0 32 ............................ TGACTTTAAACTTTAGTTTATATCGTTGACCT 37271 28 100.0 32 ............................ AGTAGCAGCAGTAACGTCAGCAGCAGCAATTG 37331 28 100.0 32 ............................ ATGGGATGTAGTTTAAATTGCCTTAAGTTGCC 37391 28 100.0 32 ............................ TTAAAGACTCCTAGTGATGCTCAAAAACTTTT 37451 28 100.0 32 ............................ TGACTTTAAACTTTAGTTTATATCGTTGACCT 37511 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 91 28 100.0 32 GTTCACTGCCATGTAGGCAGCTTAGAAA # Left flank : TTAGATATCAGATATTGGCTTGATCGTTTAGAAGATTATGTACATATCACTTCTATTCGTGAAGTACCTAGCGACATTAAAGGCTATGCCATTTACAAGCGTAAGCAAGTGAAAACCAATGCTCAGCGTTTGGCACGTCACCGTGTAAAACGTGGGGATATTGGCTTTGATGAGGCTTTGGCAAGATATAGCAATGTGGTGACCACAACGAATTTACCTTATGTCGAAATGAAAAGTCTAAGTACTTCAGACAAGCAAAGTGAAAAACGTTTTAAATTGTTTATTGAAAAGCAATCTGCAGAGAAATCTGAAACTCAGGTTTTTAGCACCTATGGATTAAGTTCGGTATCTTCAGTACCAGAGTTTTGACCCAATATTTTTTTACTCTTTAACAGCTTAATAAAATCAATAAGTTATGATGGTGGTTTAAAATTTGGGTCTTTTTATAGATTTAAGGGTTAAATCACTGTTATAGCTTTATTTTTTGCTGTAAAATTACT # Right flank : AATACAAGTAATGCCATTAATGTTTTGGTATTCTTCTTAGAAATAATCGATTTACCCTAAACGCCGTGCCACAAAGTTAATTACGATATAGCTATAGGTACTTTAGCGATATTGAATACACAAGCGTTATTATTTGCAGGCTATCTACTTGGCTTATCTATATCAAATATTGTAATTATTTTCAAAGTAGGATAAAAAGAAAATATCTCTTCAGAAAGCTAATTAAGTAAATTACCTTTCTTCTTATGACGAGCAATACATAAGCCGGCAACTATATCAAATGTCTGAATTAATAAATTTTTTAAAACTTTTTAGTCCTAAAACGATCGAGCGTAGTGCTAGTTATGTGAGTCGAATTGATCGTCAGACCATTGATATTGTGATAGAGGATGAAGAGCTTTTTATGTATGCCCAGATTGAGGGTACTGACTATTATGACACGAATATTATTTATGATTTAAAAACTGGTATATTGATTGATGATGATTGTAGTTGTCCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCATGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 148-475 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAZQZ010000073.1 Acinetobacter johnsonii strain AJ1 NODE_73_length_3448_cov_136.522100, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 148 28 100.0 32 ............................ TAAGGATTTCGACGGATAAGTTGAATGAAAGA 208 28 100.0 32 ............................ TTTGCCTGCCGGCTCTATTTCTATGGATTTTA 268 28 100.0 32 ............................ TGCAACCTTTGCATCGTGCTTGTATTTTTTAT 328 28 100.0 32 ............................ TTGCGGCACACCATCTTTATCAACGTACTGCC 388 28 100.0 32 ............................ ATTGTTCAATCGATGTTAAGTAGTTTTGGCAC 448 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTTGCCATCGCATAGATGGTTTAGAAG # Left flank : GTCATCGTTCCATTTCAGGTTATTTCGCTGGGATTTATGCATCCTTATGTGCTTATCAAATCTGCCATCAGAATAAGTCTCAATTTACAACAATCTAAAACTCGGCTTATCCATGATTCGGGTTATTTAATAAAACCAAAACCAAAAG # Right flank : GAGACTGATTATGAACCATATGTGAATTTAATTAATTTCCCAGCCAATTCTGATCTTTATCCTACATTCATCAACGAATAAAAATAAATTCAATTTATTTAACTACTTAGAGATTAGTATATATCCAGAAAGAAGCATAAATTAAAACCTATGTGATGCACACATGACGCATCACTTTTAAGAATATTCCATTGTTTTTTATCATCAAAGTTTAGAAGAAGTAACCAAAATTTATCCATTACGTAAGCATCCGCTGAACCCCATCGCTATATTTTAATGAGGATCAGGTTTCCATCGGTGTGGTAGTAATTCTTCTATTTGGGTCACTTTATGTGTCGGTAGTCTTTTCAGCACATCACTTAAATAGGCATACGGATCCAGCTCATTCAGTTTTGCTGACTGAATCAGCGTCATGATATTCGCCGCTCGCTGACCACTTCGTAGCGAGCCAGCAAATAGCCAGTTTTTACGTCCCAAGGCCCAGGGACGCATCTGGTTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCATCGCATAGATGGTTTAGAAG # Alternate repeat : GTTTGCCATCGCATAGATGGTTTAGAAGA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: F [matched GTTTGCCATCGCATAGATGGTTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //