Array 1 87594-86644 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026744.1 Pasteurella multocida strain 161215033201-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 87593 28 100.0 30 ............................ AAAATTGTTTATTTGGTACAATATAATGAA 87535 28 100.0 32 ............................ TTATCGCGGAAGTCAGTCGTCATAACCGCGTA 87475 28 100.0 30 ............................ ATTTAGATAGAAGTCATAATTAATAACTTC 87417 28 100.0 31 ............................ GGTTTGTCAAAATCAGAGTTGACCTCCCTAC 87358 28 100.0 32 ............................ AAAATCTGTGGAATTTGTCGCATATTGCCTTT 87298 28 100.0 31 ............................ GTTGCAAGGGTGTAGCTGGCGCCGCGTATTC 87239 28 100.0 31 ............................ ATGAACACATGATTATTTTTGATTGATCAAA 87180 28 100.0 32 ............................ ATAAACGTYAGTGAAAAAGAAAGGAAGAAACG 87120 28 100.0 32 ............................ AAGTACCCATGCTCACGTAAAGCTTCCGAAGC 87060 28 100.0 32 ............................ AAGCCCCAGRGCAGATGAGAATGTCATCTCGT 87000 28 100.0 31 ............................ AAGCAGTAGCCGATAGATTGCATCTTGTGAT 86941 28 100.0 32 ............................ TAGAAATAGAAAAAGTATAATTTATTATAGTT 86881 28 100.0 31 ............................ TCGCCTTTTTCGCAAACTATTTGCGCACCCG 86822 28 100.0 32 ............................ AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 86762 28 100.0 2 ............................ GA Deletion [86733] 86732 28 96.4 33 ...T........................ GTCATCTTCCAATTCTTCTGTTTTCTGCTCTTT 86671 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.8 30 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGGATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCCCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACAAAAAATATTGGTAAACGTCGCAAATCCAATACCCCCCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGTTCCATACTTGATGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGTTCACTGCCATGTAAGCAGTGTCAATTGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATAAGTCTATTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCCGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTGGCACCATAGAGGGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCAGATAACGTGGATTTTGGCAAAATCGTTACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTAAATGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATATCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1021634-1022485 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026744.1 Pasteurella multocida strain 161215033201-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1021634 28 100.0 31 ............................ ATTAGCTGAAGACCGATTTATTTGAATACAG 1021693 28 100.0 31 ............................ CTCGCTCAAAACACTTAACTCATATACGTTT 1021752 28 100.0 29 ............................ GAAACACTAGAATATTTAACTTCATTGAA 1021809 28 100.0 26 ............................ ATTCGTATTTCCAACGCCAAAAATTT 1021863 28 100.0 32 ............................ ATATACTTTTTCAAAATAACGCCATGCCAACG 1021923 28 100.0 32 ............................ CTTATCATGATGGTGTAATTTCTAAGATTTAA 1021983 28 100.0 28 ............................ TATCCGGTTAAAGWCAATCAAAGTCGCT 1022039 28 100.0 32 ............................ AAAAACCAACTGAAGACCAGAGTGCCGCTGAA 1022099 28 100.0 32 ............................ AAGCCAAGCTTTTAATTAAACACATGAATTAA 1022159 28 100.0 30 ............................ TTTAACAATGCCGTATTTCCTATTCACGAA 1022217 28 100.0 31 ............................ GTTCGTGTAAATCTAAAATCAGAGTTCAAAG 1022276 28 100.0 33 ............................ CTTGGTGTAAATCTAAAATCAGAGTTAAAAGTG 1022337 28 100.0 33 ............................ AGTTCCGGGTAAATCAAAAATCAGAGTTCCAAT 1022398 28 100.0 33 ............................ AGTAAAAGCAGTAAATGACTTAGAGAAAAAAGT 1022459 27 92.9 0 ........-...............A... | ========== ====== ====== ====== ============================ ================================= ================== 15 28 99.5 31 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACAGCAACAATTATTGCGATCTGGCTTATCAGACTATGCTTTAATTAGCGAAGTGAGTAAAACACCGTCGCCTACCGAGCATCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGTCGTACTGAGAAGCGTCTTAAAAGTCAGGGAAGATGGGATGAGTCCATCCGCGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCCAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAAAAGAATGCCGCAATCTTGTGTTGGTATCTTTAATGCTTATGGATTAAGCAATAGCGCAACCGTGCCTCATTTTTAATCTCATTGTTAACCCTTTTTTCTTACTTGAAAAATTTTCAAATAAGATCAAAGGGTTATTAGTATTCCCTAAAAAAGGGTTTTCTTCTCAGATGTTCTTTAACAAATTGAAATATCCAAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTCAAGACCGGTGTATCCAATGCTGTTAAGCAACTTCAGTTAAAGAACAGAAAAGGCCCATTATGCTTATCAGATAACGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCCGCGATGCGAGAGTTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGTGGAGGTGGTACACCATTGTTTAATGGCACTGAAGCCGAGATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //