Array 1 127865-129165 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JADIWW010000008.1 Klebsiella pneumoniae strain K31 contig00008, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
    127865	    29	 100.0	    32	.............................	TAAGCTGATCGTTGCCGTAATGCGAAGCGGGA	
    127926	    29	  93.1	    32	.............T.T.............	TGACTTTTGTGAAATTTTTTTCTTAAAAAACT	
    127987	    28	  86.2	    32	..........A...C.-T...........	TGACTTTTGTGAAATTTTTTTCTTAAAAAACT	
    128047	    28	  86.2	    32	..........A...C.-T...........	TTAATGTTTTGTTAATTTATAAGTGTGGTGAA	
    128107	    29	  93.1	    32	.........T...C...............	CGTTCGGCTAGGGCGTTGACGGACGCATTTTC	
    128168	    28	  89.7	    32	...C.-........C..............	TGACTTTTGATGAGATTTTGTCGATAAAAATT	
    128228	    29	  89.7	    32	.............G.A............T	TCGATGGCAACCACCAGGAACAATAGAACCCT	
    128289	    29	  86.2	    32	.A......T...TC...............	AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG	
    128350	    29	  93.1	    32	............TG...............	TCGAAGGCAACCACCAGGAACAATAAAACCCC	
    128411	    29	  89.7	    32	.A..........TG...............	CCGACCCGGTGCCCAGGAGAACTGGCTGAATA	
    128472	    29	  93.1	    31	.............G.A.............	TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 	
    128532	    29	  96.6	    32	..........................T..	CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC	
    128593	    29	  96.6	    32	............T................	TCGCCCAGTCCAAAGGGGATGATGCAGGTTTG	
    128654	    29	 100.0	    31	.............................	AGCAAATCGAAAATCCGGCTGTTTAAAAATG 	
    128714	    29	  93.1	    32	............TC...............	GACAGTCACTATGTTCGGTATGTTTAAAAAGA	T [128724]
    128776	    29	 100.0	    32	.............................	TGTGTGTTGGCGTTCGTTAAAGATTGTTAGTA	
    128837	    27	  93.1	    32	...........--................	GCAGCGGCCTGACGATGATTGATATGAACGGC	
    128896	    29	  93.1	    32	............TG...............	TGACTTTTGCGCAGCCTCAGGGCTCCGGTTTG	
    128957	    29	  96.6	    32	.............T...............	TGACTTTTTAAAAAAATCAGCTGAAACAGCCG	
    129018	    28	  89.7	    30	..........-.TT...............	TTCGAGCACGGCCATGTGGAACTGTTCAGT  	
    129076	    29	  93.1	    32	..G..T.......................	TTACGCATTGTGATAGGGATTCGCTTCAGACG	A [129080]
    129138	    28	  89.7	     0	..............C.......-.....A	|                               	
==========	======	======	======	=============================	================================	==================
        22	    29	  92.8	    32	GTATTCCCCCCGCATGCGGGGGTTATCGG	                                	       

# Left flank :   GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGACGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTACATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCGGGTGGATTTTAGTGGTGCTATTTAATATTTTATAATCAACCTGTTATTTTTAGA
# Right flank :  ACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAAATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCTGGATAACCCACATTCTGCCATATCTTGCAGGTTGCAATCAGAAAAGGCCTTACGTCGGTAAATTCATGCCTTGGGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGACAGGGCGGCATTCCTGCTTTAAAAACAATCACTAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGTTTATATATACAGTGTTTTTAGGTGGTCGGAGGTTGTGTCTATGTTCTTAATTCCAATGGAAAATCCTGAGAAAATTGCCATCCCTTTATTTCTCGAGCGGTGTGCAGCTGGCTTCCCCAGCCCTGCTCAGGATTATACTTCCAGTGAGCTAGACTTGAACGATTATTGCATCAGGCATC

# Questionable array : NO	 Score: 5.23
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.26,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTATTCCCCCCGCATGCGGGGGTTATCGG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [3,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.10,-12.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [7-13] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,1.01   Confidence: MEDIUM] 

# Array family : I-E [Matched known repeat from this family],   
//