Array 1 31142-33211 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKKR01000049.1 Vibrio paracholerae strain 2016V-1111 2016V-1111_ori_contig_38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 31142 28 100.0 32 ............................ CGTCACTGGATTTTGCCAGTGCCCGTAAAGAT 31202 28 100.0 32 ............................ ACGTAATATCGCGCACCGCAGACTCTTTCTCT 31262 28 100.0 32 ............................ CCGTTCTCACTCAGTACAGATAGAAAGCCGGA 31322 28 100.0 32 ............................ TTTGCGGCACATCAATAGCCGATAACAACACA 31382 28 100.0 32 ............................ TTATCGATTCTGAATACTGCATCACCGACCGA 31442 28 100.0 32 ............................ AAATAGCCCTAGTGCATTGATGAACACGCCAT 31502 28 100.0 32 ............................ ACTGTAAGTTCGGGTTTCTGGGTTATACGTAT 31562 28 100.0 32 ............................ ATTTTGAAGCCGTCAACCCACTCCCAAACATT 31622 28 100.0 32 ............................ ATCATCAAGCTCGATTTCCATGTCGGCGTACT 31682 28 100.0 32 ............................ TTAACGGTGACTTTTTGCATGTTGAGTCCTCA 31742 28 100.0 32 ............................ ATTCGTCGGTTGCTTTGTAGGGATAGTGGAAA 31802 28 100.0 32 ............................ GCATTGATACAGTATATTGTGATGCGGTTGGT 31862 28 100.0 32 ............................ TGTGTCGTAGGGTACTAGTGTTAAGTTTGTCG 31922 28 100.0 32 ............................ CATAATGTCAACTGCGTTTAACTGGTCTGACT 31982 28 100.0 32 ............................ ATCAAAAGCGGGTGTTTTTACACAGCGCTCAT 32042 28 100.0 32 ............................ GTGGTGCGGAATTGATTTTGAATTGCTGCCGC 32102 28 96.4 32 ..............T............. TAGTGCAGCCAGTCCGATTTTTTGGGGCTGGC 32162 28 100.0 32 ............................ TTTGTAAGAGTATGCTTCGTGCTTGGTCGATA 32222 28 100.0 32 ............................ TGCTGTCTGGGATCCGGTCTCTAACCAATGCA 32282 28 96.4 32 ...........C................ TTTCGCATCGAGTACCAGTTTATCAGCCGCGT 32342 28 96.4 32 ...........C................ ATCAAAATTACCATCAATACAAAGACAAGTGC 32402 28 96.4 32 ...........C................ TGTTGGCATATGCGTAATGCGATACACACTGT 32462 28 96.4 32 ...........C................ AATCACATCATGGATAAACGCGAGCGGCCTGC 32522 28 96.4 32 ...........C................ TTCATTGAATCAAGATACTTGGCAGCAATACT 32582 28 96.4 32 ...........C................ ACAAACGGTAATCCTTCTTTAATTGGTAGGAT 32642 28 96.4 32 ...........C................ CCCTATTTTTTAGGGCTGAGAGGCGGAAGCCT 32702 28 96.4 32 ...........C................ TTGCGTGGCGCTTGACAGTTTCGGTTGTTGCG 32762 28 96.4 32 ...........C................ GACAGGCAACACCGAAGGATTAGGATAGATAT 32822 28 96.4 32 ...........C................ GTTGTTGGGTTTGTTAACGTAAAAATCACCAT 32882 28 96.4 33 ...........C................ ACCATGCCGCAGGAGTTTGGCACGTTTTTATCA 32943 28 96.4 32 ...........C................ GGATTTTTCCATAGAGCGGATCCGCGCCTTCC 33003 28 96.4 32 ...........C................ ATTGTCCCAAGCGGTTTCATCTTCGCTTAGTT 33063 28 96.4 32 ...........C................ AAAAACCGGATTGACGAACCACGAGATGCTTA 33123 28 96.4 32 ...........C................ TGTTGTGTATCGGTCCTGACCGTTCTGATCTT 33183 28 89.3 0 ...........C..........G.A... | T [33203] ========== ====== ====== ====== ============================ ================================= ================== 35 28 98.0 32 GTTCACTGCCGGACAGGCAGCTTAGAAA # Left flank : AAGCTTATTGAATGATCTACAAGGTTTATGCTGGTTAGGGCCTCTCAGCGGTTATTGCCAAATCAGTGAAGTGTTAAGCGTTCCTGAGCAAGTTCAATACCGGGTGATCTCAGCTAAGCGCCGTAATTTAAGTGCTGCGAAGCTGCGCCGTTTAATTGCACGAGGGAGTATAAATAAAGAAGGTGAGCAGCGTTATAAAAAGAAGATGCTGAATCAGAGTATTAAAGGTCCATATCTTGATTTACTCAGTAGCTCGACAGGACAAAAATATCGTAAATTCTTTGAATTTGGTGAAATTCAGGACGTGCCTGTACTTGGAAATTTTGATACCTATGGACTAAGTCTTAAGGCAACAGTACCTTGGTTTTAACCCTATTTTTTCGCTCTTTAAAAATATACCTAAAATACAATGAGTTACAATAGGTGTTTTTTAACAAGGTAAAAATACAATTTTTACCCTAACTGACTGTTGTAACTTACTTTTATAGATTTATTCTATA # Right flank : ATCTTTATATATCCTATAGTTGGGGTTATATAAATGACAGTTTGCGTTGAGATTTCCCGCTTACTGGCTGTATATCCAAAATTGTGGTAGCGTTTCCCACACTAACACCAGTCTATTAATTAAGCCGCTGCCCTTCGGGGTGGCGGTTTTTTTATGCCTGAAATTTGGAGCCGCACATGCAAGACAAGAAGTTATTGGGCGATGAACTCTCACCAAAATCGACCATTAATGCCACTACGGATATGAGTCAGTCTGCTTTTCTACCGAAAGGCTTTCAGTTTGAAGCCCCTAAAGCACCGCAACGTAACTACGATGTGACGTTAGGGGATACCGCTAAAGCCGTCGGTAGTGGCGCTCTGCGTTCACTGGCTGGCCTTGGTGAACTCTCGGAGAACTTCCTTGGTGTCGGTGAGGACTTTCGAGATTTGATGTCGTCTGGCTCGGATTATCTGCAAGAGAGTATGACTCAAGATGGCCGTGACGCCCTGAACTCTCGTATC # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //