Array 1 159252-157215 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIUB01000004.1 Pseudomonas oleovorans subsp. oleovorans strain DSM 1045 PSOLE_contig000004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 159251 29 100.0 32 ............................. GCAAGCCAGAAGCCCCGGATTTACTGACCTTG 159190 29 100.0 32 ............................. GTTTATGCGCGTGCGCGCGCGTGTGCGAAAAA 159129 29 100.0 32 ............................. TTCAGCCTGTTCATCGAGACGCTGGGGGTGGA 159068 29 100.0 32 ............................. GCTTCGTCGCGGTCAGCCTCGACCACCTTTAC 159007 29 96.6 27 ............................C CTGTCGCCCGCCTCGCCCGCCCTGGGC 158951 29 100.0 32 ............................. TGAGCTTCGCCCGTTGCGCCAAGGCCATCGAC 158890 29 100.0 32 ............................. CTGTGCGGCTGGAACGTGGAGGCGTGGGATCA 158829 29 100.0 32 ............................. GGACTCGCCTTCAGATCATGATCGAAGAGACC 158768 29 100.0 32 ............................. TCATAGGATGGGCACCAGTAACTGGCGTTAGC 158707 29 100.0 32 ............................. TGGATAGGCTGAGCGGCGATATTCTCCCTGTA 158646 29 100.0 32 ............................. TAATCAAAGACATTGCCAGCCCGTACTACGGC 158585 29 100.0 32 ............................. GCATCAACGATGGCCTTGTCGATGTTGGCTTC 158524 29 100.0 32 ............................. GCTGTTGCTGCCGGGCAGGCGCGGGTGAACGA 158463 29 100.0 32 ............................. GGGCGCCACGCTTCTGCATCGGGCGATCCTTG 158402 29 100.0 32 ............................. CTGCTGGTTGCCGGCGCCGGGCCGGATTACGC 158341 29 100.0 32 ............................. AACTGAATCGCTGGACTTCCCGGCTCCAATTC 158280 29 100.0 32 ............................. TATCTGGAGATTGCCCAGAGACAACTGCAAAT 158219 29 100.0 32 ............................. GCATCTTCGTTACCCTGTACCTGCCGATATGC 158158 29 100.0 32 ............................. ACGCCGATAGCACAGCACAGGCCGCGCCAGAT 158097 29 100.0 32 ............................. GCCATCGCGCTTCATACAAACTTGGTGGAAAA 158036 29 100.0 32 ............................. GGTGATTTATGAGTGAGTGGATTAGCGTAGAA 157975 29 100.0 32 ............................. CACATGCTCGACAGCGCCCTGATCATCCCAAC 157914 29 100.0 32 ............................. GACGGTCACGCAATCATGCACTCAGATGACGC 157853 29 100.0 32 ............................. GTCAATGCCCGCGTGCTGGTGGACTGGTGGCG 157792 29 100.0 32 ............................. CGCTTCCTGCTGGTCGCCCGCCACGTCGAGAA 157731 29 100.0 32 ............................. AACTCCCGGACAGTGCGCGGGAGTGTCATTGC 157670 29 100.0 32 ............................. CCTTCGTGTATCTCACGCTGTCTTTCTTCGGC 157609 29 100.0 32 ............................. ACGGCTGCCGGCTTCAGCGGCAAAAACATTGA 157548 29 100.0 32 ............................. TCGGGCCTGCAGGAGTAGACGCAGGTGGAGCA 157487 29 96.6 32 ....A........................ GGCGACGTTCCCACCATAGGCCATGGCTCGAC 157426 29 100.0 32 ............................. CTGGTGTGCAATAGTCGGCCACATCAGATGTG 157365 29 100.0 32 ............................. GCGTTGGCCGATGTGCAGGCCGCCGCGTCGAG 157304 29 100.0 32 ............................. CCCCCAAACCCGACCAGGAAGAGAAGAAGGTC 157243 29 89.7 0 .........................G.TT | ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATGAACCG # Left flank : GCGAAGATCATCCCCACCATCGAAGAGGTGCTGTCCGCAGGTGGTATCTCGCCACCCGAGGCACCGCCGGAGTCCGTACCACCAGCTATCCCCAACCCGGAAAGTATCGGCGATGCCGGGCACAGGGCGCAGTAATGAGCTTTCTGGTCGTGGTCACCGAGAACGTACCGCCGCGCTTGCGCGGACGCATGGCTATCTGGCTGCTGGAGGTGCGTGCCGGCGTCTATATCGGTGATGTCTCCAAGCGCACCCGCGAAATGATCTGGGAACAACTGAGCCGGGGGCATGAAGATGGCAGCGTTGTTATGGCCTGGGCGAGCAACCACGAGTCGGGTTACGAGTTCCAGACGCTAGGCCCGAACCGTCGTTTGCCGGTGGACTTTGATGGCTTGAATCTGGTCGCCTTTCAGCCCTTGGAAAACCCTGATCTTTAACAAGGAAAAGTTGGTAGATTTTTAGCGGCTAATTTTCCCCTCTGGGGACAATTGGTTACGCTAAGA # Right flank : GGAGGGGGGTGCTCGGCACGCTGTTTTTTAGCCGGGCAGGCGAGTAATCTTGCCGCCGATGGTTCTGCGTGCACGTACATGACGCGGATGAAAAGGGAATAGGGTGCGGCGAATCTCGCCAACGCCCTGGCTGCCCCCGCAACTGTAAGCGGCGAACGATGCCCTCATGCCACTGACTCCGGTCGGGAAGGCGGGCGAAGTGCCAAGCCGTGAGCCAGGAGACCTGCCATCGATAACGGGCGTTTCGCCCATCCTTCATCCGAATCGTCGCGCGGTGGGCGCGGCAAAGGAACTCGCATGCATATCGAACCCGGTGTCGTCGAAGGCGCCAAGATCCTGCTCAGCTACGCAACGGCCGTCACCGCTTTCGGCCTGACCGCCAAACTCGCCCTGGACAGCGTCCGCAACAACGGCGGTGTCGCCGCCCTGGCGCTGCGCAGCCTGCTGACCACCGCGCTGGTGTTCTGCTTCTTCGAGGTGTTTCCGCATCATGCGGTGGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 171491-170363 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIUB01000004.1 Pseudomonas oleovorans subsp. oleovorans strain DSM 1045 PSOLE_contig000004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 171490 29 100.0 32 ............................. TATCTGTTCAACGGCACCATTGATTGGCTGTT 171429 29 100.0 32 ............................. CTGCTGGCACGCCCCGGCTACTTTGAGCCGAT 171368 29 100.0 32 ............................. CTCGTGAAGGCGGCGCAAAAGGCGATGGCGAA 171307 29 100.0 32 ............................. TGCGAATAGCGCATGGTCATCTTGATATCGCC 171246 29 100.0 32 ............................. GTCGCGCGGTTGCTGACCCTGGCCGGCGAGGC 171185 29 100.0 32 ............................. CCCCGAATATGACGCAGCACATTCAAACTTGC 171124 29 100.0 32 ............................. TCCGGCTCAGCCTTGTTCAGCGCGCGCTTGCC 171063 29 100.0 33 ............................. GTGAACTGCTCCAGGCTGGCATCAACACCGGTC 171001 29 100.0 32 ............................. CGCATCGAGAATATTTGCATTCTGACAAAACC 170940 29 100.0 32 ............................. AGTGCGCATTGGCTTGGGCGTGAGTGTGGAAA 170879 29 100.0 32 ............................. CCCGCAGCAGCTCAACACCTGGCGCGAGCAAA 170818 29 100.0 32 ............................. CTGGCAGTCAGCATCGTGCTGGGCCATCACCG 170757 29 100.0 32 ............................. TCGGTGAACTTGGCGAGATGCTGGTCAAAGAA 170696 29 100.0 32 ............................. CGTTGTAACTAATCCATCAGGCCCGGTTACAA 170635 29 100.0 32 ............................. ATCATGATTAACCCCTTACCACTGGCCGAGCG 170574 29 100.0 32 ............................. CAGATTGATGCGCGGGAGGCGCTGGCAAAGGT 170513 29 96.6 32 .................A........... CGCATGGAGACGTTGGTTTTGCCGAACTGGAA 170452 29 100.0 32 ............................. TTCTGCATTTCCTCTTCGTTGCCTTCGCGCTC 170391 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATGAACCG # Left flank : GGAAACCATCATGCCGCGCCTGTACCGCGAAGCGCCGGTCAACTCGATCTGGGAAGGCTCGGGCAACGTGCAATGCCTGGACGTGCTACGCGCGCTGTCCAAGGAACCTGGCGTGCTCGACGCGTTGTTCGCCGAACTGGGCGATGGTCACGGCGATGCCCGCCTGAAGGCGCATATCCAGCGCCTCAAGGCAGATTTCGCTGATACAGCCGACATCCAGTACCGCGCGCGCCGGCTCACCGAAGACATGGCCGTAGCCCTGCAGGCGAAGCTGCTGCTGGAGGCGGGCAACGCCACTGTCTCCGATGCCTTTATCGCCAGCCGGCTGGAAGGCCGTGGCCGCGTCTACGGCACCCTGCCGCGCGGTGTCGACGTCGAGGCGCTGCTGGCGCGTAGCACGCCGAATCTGCTTTGATACAGGGGCAATCTTTAACAAGGAGAAGTTGGTAGGTTTTTAGCGGCTGATTTTCTCCTTTAAGGAACAATTGGTTAGGCTAAGT # Right flank : GCTCAAGCCAAGACGCACGAATCCTTAGGAGCGAGCTCTGCTCGCGAAGCTTCTGACTCATCCAGATTCACGAGCAGAGCTCGCTCCTACAGGTCAGGCAGTCAGGCATATTCACCGCGGCGCACTGGTCTCCCCCTGCGCTGTTGTCAGTCCAGAACGATGCTGGCACTTTGTTGGGCCAGTAACGATGCGATGCAAGGAGTGCCAGATGAAAGGATTCGCCGATCTCAGCGAGCAGGCCCGTCGTCTTTGGGCCAAGAGTGACGATGGCTTCGGTCATGGTGTGCTGGCGCATTTGCTGGATGTGGCGGCGGTGGCCGAGCGGATGCTGGCCCATGAGCCTCCGAGTACGCTGGATTGGGCCGCTCAAGCGCTGGGGTTGGAGCGCGAGCATGTCGCCCGCTGGGTTGCCTGCCTGGTGGGCCTGCATGACTTCGGCAAGGCCATCCCCGGCTTTCAGGACAAGTGGCTCGCTGGGCGGCAGGCTGATGAGGCGCTTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 31308-31757 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIUB01000003.1 Pseudomonas oleovorans subsp. oleovorans strain DSM 1045 PSOLE_contig000003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 31308 28 92.9 33 .C..........A............... AGTTCCAACCAGGCTTCGACGAGCCTACGACAC 31368 28 96.4 33 ............A............... TGACCAACTCCGTCATCAAAGGCGAACAGCATC 31428 28 96.4 33 ............A............... ACGTCCCACGCTTTCATCACCAGCTGGGTTTTC 31489 28 100.0 32 ............................ TGGTCGAATCCGCCCAGCTCTACGCCCCGCCC 31549 28 100.0 32 ............................ TTCATGTGCGCGGCGCGTGGCTTGATCTTCTC 31609 28 100.0 33 ............................ GATCACGGCCAAACGCCCGTCGGCCACCATCAA 31670 28 96.4 32 ...........T................ TGCACGCAGAGGCCGAGTCGCTGCGGACTGAG 31730 28 75.0 0 ...........TA........C.GCC.C | ========== ====== ====== ====== ============================ ================================= ================== 8 28 94.6 33 CTTCACTGCCGAGTAGGCAGCTCAGAAA # Left flank : GTAAGCGGCCAACGCCGACAGCAGCAGGTGACTCAGCCAGAACGACACCGATTGACGCAACAAACTGACGTAGTCGACCTCATCGATCCGACCCCAGGTAATCAATGTGATGACAATGCCGATCACCCCGACCGCCAAGGCAACCCAAGCCACGTGGCGCGGCAATGCCGGCCACTCGCCCGGACTGGAATTCACTGCCGCAGCCGGCAAAGGTTCGAAGGGATTGGCTTGGCTCATGAGGTACTCCCTGTCGAGGTCTGAATCCATCGAAACGCGAGAGTACCGCCCCTCCCAGCAGGGCAATAGCTCGAGATGGCAGAACTGTGCGGTATGGCCAGACAACGGTCAGCACCTACAAGGCATGCCCATACCCATTTTTCTACGACGGACAAATCGTCTTTTAAAAATCAATGAGTTGCCGGATGACGAGAAAAAATGGTCAACCACCACCGAATCCCGCCATACCTTGAGCGATGCAAGTTTGCCGGCTATCGCGCCTA # Right flank : CTTGGCAGCCACAAGCAAAAGGGCTTAACTGCCAGCATTGTTTCAGGAGCCCCTCATGGACGACATCAGCCCCTCCGACCTCAAGACCATCCTCCATTCCAAACGCGCCAACCTCTACTACCTGCAGCACTGCCGGGTGCTGGTCAACGGTGGGCGGGTGGAGTACGTGACCGACGCAGGCAAGCAGTCGCTGTACTGGAATATCCCCATCGCCAACACCACCACTATCCTCCTCGGCACCGGCACCTCGATCACCCAGGCGGCGATGCGTGAGCTGGCCAAGGCCGGCGTGCTGGTGGGTTTCTGTGGCGGTGGCGGCACACCGCTGTTCTCGGCCAACGAGATGGACGTGGAGGTCGCCTGGTTCTCGCCGCAGAGCGAGTACCGCCCCACCGAGTACCTGCAGAAGTGGGTAGGGTTCTGGTTCGATGACGGCAAGCGCCTGGAGGCGGCCAAAGCCTTTCAACTGGCGCGCCTGCAACGTATCCGCCAGGGCTGGC # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAGTAGGCAGCTCAGAAA # Alternate repeat : TCACTGCCGAATAGGCAGCTCAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 42191-45403 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIUB01000003.1 Pseudomonas oleovorans subsp. oleovorans strain DSM 1045 PSOLE_contig000003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 42191 28 100.0 32 ............................ TGTTCAAGGCCACCGACTACGCGCTGATTCGC 42251 28 100.0 32 ............................ ATGTATGCCGGTGCGGTTTGCCCGGCCTCCAG 42311 28 100.0 32 ............................ TGCTGGATCTGCCAGACTGACACACTCAGGTG 42371 28 100.0 32 ............................ GCCGCGCCACGAAATCCACATATCCCCAACCG 42431 28 100.0 32 ............................ TGCGCATCAGCGAGGCTGCACGCGAGCTGGGT 42491 28 100.0 32 ............................ AGACATTCGAACAAGGCTGGGCAGCTCGGCCG 42551 28 100.0 32 ............................ TCGATATCGATACGCGGCGCCATGCCCCACCA 42611 28 100.0 33 ............................ GCACTGTCAGAGGTTGACGGCGTGGTATATCAG 42672 28 100.0 32 ............................ TCGAGCTGGGCCTGCAACTGCACCACTGAGGG 42732 28 100.0 32 ............................ AGCCCCAGAGCCAGCACGTAGAGAGTAAAGAC 42792 28 100.0 32 ............................ TAGCATATCAGGCAGGCATCACGCTGCCGATG 42852 28 100.0 32 ............................ TCACACAATAGAAACAACGCGCTGCTCTTGAC 42912 28 100.0 32 ............................ ATGAGTCGCGCCAGGTGTTCGCGCTGGCTGTC 42972 28 100.0 32 ............................ ACAGTGGAGTAAGGCAGGAGCGAGGATGTGTA 43032 28 100.0 32 ............................ TGGGCGCTGGCATCTATGACCGCCTGGTGGAA 43092 28 100.0 32 ............................ CGACCATGAAAGAGCTCGCCGCCGCGGCGGGC 43152 28 100.0 33 ............................ ACGATATGAGCGCTGAGCTGATCGCGCCTCGAC 43213 28 100.0 32 ............................ AGGCTGAACGAAGGGGCGTTGATGGTAAGGTC 43273 28 100.0 32 ............................ AGGTGCTAGCGTGCATCGAGCGGCAGGCGGTG 43333 28 100.0 32 ............................ AAGCCACACGCGGCCGGGCTGCCAGTTCCAGC 43393 28 100.0 32 ............................ ATGGCTGTGGTCGGCATCATCGTGCGCATGCT 43453 28 100.0 32 ............................ AGCGTGTGCTGATAACCGTAGTCGATCCCGTA 43513 28 100.0 32 ............................ ACTTGGCAGGACGAACAATGCCCGAACATCCC 43573 28 100.0 32 ............................ AGATCGGGATACAACTACCGCGACTATACATG 43633 28 100.0 32 ............................ AGTTCGAGTGGGTCTTGCAGGTTGAGCAGCAG 43693 28 100.0 32 ............................ GGGGCTATTATTGAGCGCGGCAGTAATGCTAA 43753 28 100.0 32 ............................ AAGCGCCTCACTGGCCACGGCCTGGGTGGTGT 43813 28 100.0 32 ............................ ATCCGCATGACGTGACCTCGTTCCCGTGATCC 43873 28 100.0 32 ............................ AGCGCCCGAGGCGCGCGAGCTGATTTCTCGCC 43933 28 100.0 33 ............................ TACTGCGTTGACGCCGGGCAGGTTGATATTGGC 43994 28 100.0 32 ............................ AAGCTGCAAACCGCGCGCACTATCGGCGGCGT 44054 28 100.0 32 ............................ TCGCCAGTGCGCTCGTCGCGGTAGATCTCGGG 44114 28 100.0 32 ............................ AGCTCCGGCAGCGGGTTCGGGTCAGTCCAGAA 44174 28 100.0 32 ............................ TGCCACACGCGGCCGCAGGCGTAGAGCGTGGT 44234 28 100.0 32 ............................ ACGCCCTGCGCGTAGTTGCAGTACCTGCCTCG 44294 28 100.0 32 ............................ ATAAGGCGGCGACTAGGGATTCCAGTCGCGTC 44354 28 100.0 32 ............................ TCCAGCTCCGCCAACTGATCGTCTGTAATACT 44414 28 100.0 32 ............................ GTCTAAGGCGAAGTCTGGCTCGGGCAGCTCAG 44474 28 100.0 32 ............................ GTGGCCGAAGCGGAGAAGGTGCTGATGGCCAT 44534 28 100.0 33 ............................ TGGTCACGGATCTGGTTCAGGGTCATGGATTTT 44595 28 100.0 32 ............................ ATGAAACGGCCTGCGCTCCAGCCACAAATCCA 44655 28 100.0 32 ............................ TGGGCGATGGTGGCGAGGATGGCGCCGATGGT 44715 28 100.0 32 ............................ TTGGCGATCTGGGCGTTGCAGGTTTTGCAGTT 44775 28 100.0 32 ............................ AGCAGCAGCCAGTGCGCGGCAATCCGTCGGCA 44835 28 100.0 32 ............................ AGGCGATGCCGAGCAGTGGATAGCCTCGGATG 44895 28 100.0 32 ............................ CCGTCCAGAACGCGAACTGCAGCAGGTTTCGG 44955 28 100.0 32 ............................ ATGCTAACCACAACGGCGAGGCGAAACGAGGA 45015 28 100.0 32 ............................ ATGGGTTGGTCGGCGGCGGTGCTGGTGGCAGC 45075 28 100.0 32 ............................ TGGTCGATGAAGACCAGGACTTTGTCCGGGTT 45135 28 100.0 32 ............................ TAGCACCGGCGAAGTTTGCCCCCCTGGCGATG 45195 28 100.0 32 ............................ TCGTAATGATTTGGCGCAAACTTCCCCCACTT 45255 28 100.0 32 ............................ TTGAAGGCTTCGCCATTGGTGGCGCCGCACTG 45315 28 100.0 32 ............................ TGCTGCAGAACGCGTTGCATCCGCTTGCGCTC 45375 27 82.1 0 ......................TT.CG- | AA [45396] Deletion [45402] ========== ====== ====== ====== ============================ ================================= ================== 54 28 99.7 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : AGCGCTGGATAAGTTGCTGGCGCTGAACTGGCTCAGCGGCATGCGCGACCACTTGAACCTGGGTGAACTGGCGCCCATCCCGGCGAAGGTGCGCTGGCGCTGCGTCAGCCGCGTACAGGTGGACAGCAACCCGGAGCGCGCCCGCCGCCGCCTGATCAAGCGCCACGGCATCAGCGAAGCAGAGGCGCGCCAGCGCATCCCCGACAGCGCCGGCAAACGCTGCGACCTGCCTTATGCCACCTTGCGCAGCAACGGCAGCGGTCACAGCTTCCGCCTGTTTATCCGCCACGGCCCACTGCTCGACAAACCCACCCCCGGCACCTTCGGCGCCTACGGCCTTAGCGCCCAGGCCAGCGTGCCCTGGTTCTGACCCTTTTTCCCAGCCCAAAACGGAGCCCTTGCAAAATCAAGCACTTGCAAGCGGCTCCGAAAAAAGGGGTAGCACCGGAAAAATCGGGCAGGTTCTTTAACAATCAAGCCGTTAGGGTTATTAGGCTCTA # Right flank : GCGCACTTCGCTTCGCTCCTGAGCCCGCCCTACGCAAAAATCCGTGTCCGGAACCAAGCCGCCGGTCTAAGCGGAATCGCAGATACGACTCGCTGCCGCACGGACTTTCAGGTGTCCAAACTACGAAACATCACATGGCAATCCACCAGGCCATACCGGGCGTGGCGGTAGGCCTTGGGCAAGGTGCCGACTATCGCGAAGCCGTGTTTCTGCCACAGCGCGACCGCGACCTCGTTGGTGGCCACCACGCTGTTGAACTGCATGGCGCTGAAGCCCAATTCACGCGCCACCTGCAGCGAATGGGCGCAGAGCCGGCTGGCGATGCCGCGGCCACGGGCGGCCGGGGCGGTCATATAGCCGCAGTTGCACACGTGGTCACCCGGCCCAGCGGCATTGGCCTTGATGTAGTAGGTGCCGAGAATCTGCCCGTCCTGCTCGGCAACGAAGGTGGCGCGCGGCAGTTCGACCCAGGTTTTCCAGGCCGTCTCACGATCCATGTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 23984-22734 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIUB01000035.1 Pseudomonas oleovorans subsp. oleovorans strain DSM 1045 PSOLE_contig000035, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================= ================== 23983 29 100.0 32 ............................. CATCCAAGTTACGCATCAGATTCGAGACGCGA 23922 29 100.0 32 ............................. CTATGCAGGGCTGGTGCGATTTCCTTCTTCCA 23861 29 100.0 32 ............................. GTCGCCTTCCTTGAGTGGCTTTTTTGAGCCGA 23800 29 100.0 33 ............................. CGAACGGGCGTCTCAGCGAGATGGTCGCTTGGC 23738 29 100.0 32 ............................. GTTTGTGGCGATCTTCTCAGCTCCCATCATTT 23677 29 100.0 32 ............................. CCCGATCCACCTTACGAAAAGCCTCTGGATGA 23616 29 100.0 32 ............................. TCAGCTTCTCAAAATTAAGGGATATAGGGACC 23555 29 96.6 32 T............................ ACGTTGCCATGAAATCCTTCTCGGTACGTGTG 23494 29 100.0 32 ............................. GCGAAGTAGGCGATCAGCAGTGCGACGATGCC 23433 29 100.0 33 ............................. TACATGCGCAAGGGCAAGTGCCCGGCCTGCGGC 23371 29 100.0 32 ............................. CATGTTTGCGAACTGAACAGCATGCGGTGCCA 23310 29 100.0 32 ............................. GCATACGATGAGAGCGGTGGCGCTGTTTTCGG 23249 29 100.0 32 ............................. ATGCTGTCCAACGACTACGGCAGCGTGTTTAC 23188 29 96.6 93 .......................A..... CTTATATATCCAGGGAGAAAATCAGGGTTCTGGTGTTGTCCACCTGCGTGGAGGTATTCGGTAGCTGCGCCCGTCATCGCCGTTGATGAACCC 23066 28 75.9 32 ..G..C......C-..TA.....A..... TCCTGTAGCGCACGTTGCGAAACCGCAGCAAC 23006 29 79.3 32 .....C..T...CAA..........A... TATTTTGGGGATTTGAAGGGGTATTGACGGTT 22945 29 100.0 32 ............................. GGCTGTGGGGGTGAGAAATGAGCAAGCGCGAA 22884 29 100.0 32 ............................. CCCATGGATCGAGCATGAGAAACTGCTCGTTC 22823 29 79.3 32 .......T....CTT.....A....A... GGTGTATGAACTGTATTTACGTAACCACGCAG 22762 29 72.4 0 ..G..C......A.TC..A..T......T | ========== ====== ====== ====== ============================= ============================================================================================= ================== 20 29 95.0 35 GTATTTCCCGCGTGCGCGGGGGTGAGCGG # Left flank : GGGTGCTGCATCGCAAAACTGGATGCAGACAAGCCGGATCAACACTGCCGAAGCAGCACGGCACCGTAGCGAAGGATTCTTGCTATTGCGGGCAGCGAAACCCAACCCAGCTGGAGGGCCATTCAAGAACTCGCTGTACCACTACCCGTTGGTCTGGGCCACGCTCACTGCATATTGCGTTGGCGATCAGGCCAGGATTGCTGACCTTCTTTCTCAATGTCGGCAGATCGGAGGTCGGCGCGGCGTAGGATGCGGTCGGGTAGCCGGATTCTCGGTGGAAGTCGTTCCAGAAGTCGAATGTACCTGGGCCTTGCGGGCAATGCCGGATGACAGCGAACAAAGCATCCTCTGCGGAGAGTATGCACTCGCAATGTCGGCTCTCCAGAGTCCATATTGGGATCGCAGTCTGCACAAGCCGGCGCTTGTGCCCACCAGTTTGGCTTAACCTTGCAAGTTACCAGATGTAGTGTTCGCACTATGCGGAAGATCAATATCTATGT # Right flank : ATCAAGCTGGTCATGCTTCCCCCTGAGAGTACGCTGGATAAACGGTGCCAACCCTACCACTGGGCTGGCTTGCGCCCTGGACTAACGGAAGGTGAGCGCTACCGAGTAGGTCTAGTGCTGGGCGCTCAATGGCGCTCCCTGGCCAAGACTGGGCTCACCCTGAGTGCAGTAGAGGTTCAGGTCCTGGGTATGGCCGTGCTGGCAAACTGGCAAGGTGATGAGGACGAGTTGGAAGCCTAAAGCTCTGCTGCATTCCAGTTCTGGGGCCTTGGGAATTGCAAATGAGCCAGGATTACACACTCCAGCTTGAGCGATCATGAGCATCAGATTCCACTCCCAACCTCCCTCAAGGAGAGCCTATGAAGCAACTTCGAATCTGGCTGATCAAGCGCAAGCTGCGTGCTGCATACCTTTCGTACCGCAACATGCTCGACCGCTCCCATGCTGGCCGGCACATGACCGTACAGCTGCCCAGCGTTGCCGCCCAAAAAGAGCGTTGC # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.24, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTCCCGCGTGCGCGGGGGTGAGCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [28-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA //