Array 1 44248-45133 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTTS010000004.1 Francisella tularensis subsp. novicida strain F1074 novicida_5, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 44248 36 100.0 28 .................................... TCTGTAGAAATTCCTAGTTTTTGAGATG 44312 36 100.0 28 .................................... GGCTCAAGTAATATCAATAATTTAGAAT 44376 36 100.0 28 .................................... ATTTATGTGATGACTGGTGTTGCTAATG 44440 36 100.0 29 .................................... ACAATTATATCCATCACATACCCCTCTAA 44505 36 100.0 28 .................................... TGTATTTTAGATAGGTTTCAGCAGAAAT 44569 36 100.0 29 .................................... AGTGCTTAAGAAAATCGAAAGTATTTGGG 44634 36 100.0 30 .................................... TATAATGAAAATACGATTATTACTTAGAAG 44700 36 100.0 32 .................................... ATTGTCAAAACATAAGCAGCTGCTTCAAATAT 44768 36 100.0 28 .................................... GTCGCTTTATCATCTTTATACTCCTTAA 44832 36 100.0 29 .................................... TTTATCTGCTCTCTGGCTACTTTCAACAC 44897 36 100.0 30 .................................... GCGTGGGTGTTGGGCTTTTTATTGCGTTAT 44963 36 100.0 28 .................................... CTTGCAAAGTGTAGTGTGTTACACCTTA 45027 36 100.0 32 .................................... ATTGTCAAAACATAAGCAGCTGCTTCAAATAT 45095 36 86.1 0 C........................A.A..A.T... | CC,T [45116,45121] ========== ====== ====== ====== ==================================== ================================ ================== 14 36 99.0 29 GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT # Left flank : GAATATGTAAGAGAATTTTATCGTGCCTTTATGCGAGACAAAGAAATTGCAGAGTATCCAATATTTTGTTATGAAACTAGGAGGGTGTATGTTGATAGTCAGTTATGATTTTAGTAATAATAAAGTACGTGCAAAGTTTGCCAAATTTCTAGAAAGTTATGGTGTACGTTTACAATATTCGGTATTTGAGCTCAAATATAGCAAGAGAATGTTAGACTTGATTTTAGCTGAGATAGAAAATAACTATGTACCACTATTTACAAATGCTGATAGTGTTTTAATCTTTAATGCTCCAGATAAAGATGTGATAAAATATGGTTATGCGATTCATAGAGAACAAGAGGTTGTTTTTATAGACTAAAAATTGCAAACCTTAGTCTTTATGTTAAAATAACCACTAAGTTCTTAGAGATATTTAAAAATATGACTGTTGTTATATATCAAAATGCTAAAAAAATCATAGATTTTAGGTCTTTTTTTGCTGATTTAGGCAAAAACGG # Right flank : TTTCTAAATTAGTATTTGCTAATATAACACTACTTGAGAATTTATTGGCTTATAAAAATGGATTTAATGCAGATGAAAGATAATGCTAGTAAAGCTTCTTCATTATTAAAAGCAATATCCCATGAGTCGAGATTATTGATATTATGCTTGCTACTCCGAAGAGAGATGACAGTAGGAGAGCTAGCAGAGTACTCTAGTTTGAGCCAATCGGCATTTTCTCAGCATTTATCAGTGTTGAGAAATAATGGTCTGGTCAAATGTAGGAAAGAGGCGCAAAATGTATATTACAGTATCAACGATCCTTCGGTAACAAAAATATTGGAGGCTTTGTACAGCATATATTGCGGTGATAAATAATTAAAAAATTTAAAGTTTATATTAGTAAAATCTAAATTAGATAAAGTTAAAATAAGGAGACTAAGATGAATAAAGTAGAAAAAATATCAGTAAAGCAATTTCTTGATCTACAAAAAAAAGAGAAGGTTAAGCTAATAGATATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 1268-590 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTTS010000086.1 Francisella tularensis subsp. novicida strain F1074 novicida_87, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================================================================================================================================= ================== 1267 36 73.0 34 T...T...AA..AG.C.....AA.......-...... AATTATCAAAGCAAATGAAAAAGATTAGCTGTAA A [1258] 1196 37 83.8 169 ..........T.AG...........T...TG...... TTTAAAGTAGCTAGAAAATTCACTTTTAGACCTACTTATTTTTATTATTTGAATGCTTTGGTAGTATGTTGAGATCAACATTTTGCTGTAAAACTGTTTTCGTGATTATATTATTTGATACAATGTGCCCAACTAGAAACTTTTAGGAATAATTTACAAAATTAATTAA TG [1169] 988 37 97.3 34 ............A........................ TGGTACGGAATAAAAGAGACTGTTTGCGATGTTA 917 37 97.3 36 ............A........................ ATTAGTTGCACAGGTTTATTCAGATACTTGTTTGAA 844 37 100.0 36 ..................................... CTATGAGCCTAACAACTGCAGGTTTGTAGATAGAAG 771 37 100.0 35 ..................................... TAGAACCAAAGACACTAGCATCTTGTATAACTACT 699 37 100.0 36 ..................................... CAGGCAAGAATATTTAGCTACTTTTGAGGAGGCTCA 626 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================================================================================================================================================= ================== 8 37 93.9 54 GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG # Left flank : AATTAAGCATTTTAGAAGAGTATTCTCTAGGTTTGATAAAACCATTTCCGTATATCTAGGCATGATAAAACTAGCTTGTACTTTTATTTGGTTACGATGAATATTAATTTTTGTGCACAGAACCTATTTTAAAGACTCTTTTATCTTGGTTAGTTTGAGCTTTTTATTTATACTTTATAAATACTGATAATCTCAATATTAGTTATGTTTACATTTTTGTTGTTAGCTATCGCGTTTATAGCAACCCTATATGCTTTATACTACTTTATTTTAGCTATTGTTAAGCTAATTGTAGCGATATATCATTTTAACTATTTTTTTTCTAAAACTGATTCAAAAAATTAATTAATTCATAAAATAAATTGCTTAAAGTCTATTAAAACTTTGTTTGTCTATTTCTGAAAGTAGTATTTAGATAAAAGCTTATGAAAAATTATTTTTAATGAG # Right flank : AGCCAAAACAAACCTAGTGTTTGCAAGGCTTTGAGAGTTTTTTAAAATGGTATTTTTTCGCAAATACCCTAATTGTAAAAAAACGTAGACATTTTGCGAAAAAATATCTAAAATTATTAATGTACCAAATAATTAATGCTCTGTAATCATTTAAAAGTATTTTGAACGGACCTCTGTTTGACACGTCTGAATAACTAAAAAGCAAAAATTTGCCACCTAAGTGGCTTTTTAGTTTGGAAATTAATATAACTTGTTTGTTTCTTAGCTCGATTACATCAAGATGGCTGAGAAATTTAATATGGAGATTTCTAAATATTTGCGAGATTTCCGCCTTCAGTGACAATTAGAGATTTTACTATCAACGATCATTACAAAAGTTGTAATATTCACATTGTATACATTGATGATCCGATGCAGATGAGTCTGGCTTATTACCACTATCTAAAGTACTAAGGATATCACTAAGACTGTTGATTTAATCTGCAAATAAATTTATGAAT # Questionable array : NO Score: 3.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-2.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG # Alternate repeat : GTTTCAGTTGCTAAATTATTTGGTAAACTACTGTTAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: R [matched GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //